Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 1.3e-58 229.6 116 100.0
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 2.5e-54 215.3 116 96.6
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 3.2e-54 214.9 118 94.1
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 2.7e-53 211.8 118 93.2
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 1.2e-45 186.4 114 83.3
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 1.2e-45 186.4 110 84.5
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 7.9e-45 183.7 116 77.6
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 1.1e-41 173.3 113 79.6
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 5.0e-39 164.5 115 73.9
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 8.5e-39 163.7 103 82.5
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 3.2e-38 161.8 107 77.6
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 1.6e-37 159.5 114 71.1
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 4.7e-37 157.9 105 75.2
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 7.9e-37 157.1 114 70.2
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.8e-36 156.0 106 76.4
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 2.8e-34 148.7 105 75.2
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 2.2e-31 139.0 77 90.9
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 5.7e-27 124.4 137 53.3
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 3.7e-26 121.7 119 55.5
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 8.2e-26 120.6 124 50.8
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-25 120.2 117 53.8
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-25 119.8 117 53.8
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-25 119.8 117 53.8
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-25 119.8 117 53.8
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.4e-25 119.8 117 53.8
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 1.4e-25 119.8 122 50.8
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 2.4e-25 119.0 126 50.8
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 2.4e-25 119.0 71 85.9
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 2.4e-25 119.0 123 48.8
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 2.4e-25 119.0 127 48.0
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.1e-25 118.6 117 53.8
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.1e-25 118.2 117 53.0
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.1e-25 118.2 117 53.0
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 7.0e-25 117.5 129 51.2
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 9.1e-25 117.1 117 53.0
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 1.2e-24 116.7 71 84.5
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.2e-24 116.7 117 53.0
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 2.6e-24 115.5 125 50.4
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 2.6e-24 115.5 127 51.2
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 4.5e-24 114.8 114 53.5
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 4.5e-24 114.8 108 52.8
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 7.7e-24 114.0 128 48.4
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 1.0e-23 113.6 115 51.3
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 1.3e-23 113.2 69 73.9
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 1.3e-23 113.2 127 47.2
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 1.7e-23 112.8 112 52.7
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 1.7e-23 112.8 127 48.0
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 1.7e-23 112.8 119 51.3
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.7e-23 112.8 124 50.8
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 2.2e-23 112.5 96 57.3
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 2.9e-23 112.1 116 51.7
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.8e-23 111.7 117 53.8
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 5.0e-23 111.3 131 46.6
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 6.5e-23 110.9 124 47.6
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 6.5e-23 110.9 119 49.6
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 8.5e-23 110.5 131 46.6
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 8.5e-23 110.5 110 52.7
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.1e-22 110.2 117 52.1
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.1e-22 110.2 131 46.6
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 1.5e-22 109.8 117 54.7
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.5e-22 109.8 112 50.9
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 1.9e-22 109.4 115 47.8
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 1.9e-22 109.4 118 47.5
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 1.9e-22 109.4 117 52.1
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.5e-22 109.0 117 52.1
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.2e-22 108.6 117 51.3
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 3.2e-22 108.6 116 51.7
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 4.2e-22 108.2 124 50.0
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 5.5e-22 107.8 114 47.4
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 5.5e-22 107.8 138 44.9
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 9.4e-22 107.1 121 49.6
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 1.2e-21 106.7 115 49.6
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 1.6e-21 106.3 99 55.6
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 2.1e-21 105.9 129 45.7
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 2.1e-21 105.9 125 43.2
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 3.6e-21 105.1 124 49.2
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 3.6e-21 105.1 116 48.3
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 3.6e-21 105.1 124 46.0
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 4.7e-21 104.8 136 44.1
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 4.7e-21 104.8 120 45.8
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 4.7e-21 104.8 132 47.0
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 6.1e-21 104.4 125 45.6
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 8.0e-21 104.0 114 49.1
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 1.0e-20 103.6 112 50.0
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 1.0e-20 103.6 112 50.0
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 1.4e-20 103.2 136 44.9
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 1.8e-20 102.8 114 45.6
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.8e-20 102.8 112 48.2
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 4.0e-20 101.7 125 45.6
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 4.0e-20 101.7 127 44.9
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 1.2e-19 100.1 112 45.5
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 2.0e-19 99.4 129 42.6
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 2.0e-19 99.4 111 49.5
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.6e-19 99.0 102 52.0
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 3.4e-19 98.6 110 47.3
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 3.4e-19 98.6 115 43.5
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 4.4e-19 98.2 114 44.7
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 4.4e-19 98.2 98 52.0
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 7.5e-19 97.4 119 42.9
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 2.8e-18 95.5 144 39.6
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 3.7e-18 95.1 113 46.0
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 4.8e-18 94.7 121 45.5
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 1.4e-17 93.2 115 43.5
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 4.1e-17 91.7 127 45.7
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 4.1e-17 91.7 112 48.2
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 2.0e-16 89.4 63 65.1
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 2.7e-16 89.0 140 39.3
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 1.0e-15 87.0 112 44.6
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 1.3e-15 86.7 87 51.7
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.0e-15 84.7 63 66.7
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 1.5e-14 83.2 65 58.5
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 1.9e-14 82.8 117 43.6
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 3.2e-14 82.0 119 42.0
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 7.2e-14 80.9 89 47.2
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 9.4e-14 80.5 101 41.6
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 2.1e-13 79.3 117 39.3
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 2.1e-13 79.3 86 48.8
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 8.0e-13 77.4 110 41.8
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 1.2e-11 73.6 106 39.6
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 2.6e-11 72.4 72 50.0
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.7e-11 71.2 83 47.0
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 9.8e-11 70.5 95 44.2
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 1.7e-10 69.7 56 60.7
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 3.7e-10 68.6 125 32.8
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 9.1e-09 63.9 57 57.9
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.2e-08 63.5 57 57.9
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 1.2e-08 63.5 87 40.2
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.6e-08 63.2 83 44.6
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 3.5e-08 62.0 56 57.1
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 4.5e-08 61.6 56 50.0
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 7.7e-08 60.8 63 52.4


User provided reference genes

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