Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 6.8e-87 323.9 160 100.0
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 7.0e-84 313.9 160 96.9
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 1.5e-78 296.2 160 90.6
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 2.8e-77 292.0 160 89.4
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 2.8e-77 292.0 160 89.4
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 4.3e-73 278.1 159 84.9
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 8.0e-72 273.9 159 81.1
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 8.0e-72 273.9 159 81.8
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 1.3e-69 266.5 159 80.5
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 1.7e-69 266.2 159 80.5
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 1.1e-68 263.5 159 79.2
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 3.2e-68 261.9 159 78.6
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 9.5e-65 250.4 146 80.1
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 1.2e-64 250.0 146 78.8
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 6.2e-64 247.7 146 78.8
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 2.6e-62 242.3 146 76.0
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 3.4e-62 241.9 155 72.3
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 9.8e-62 240.4 159 74.8
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 7.0e-60 234.2 155 70.3
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 3.5e-59 231.9 149 71.8
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 1.1e-55 220.3 159 66.7
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 1.8e-55 219.5 143 71.3
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 1.8e-55 219.5 154 63.0
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 2.3e-55 219.2 154 64.9
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 3.1e-55 218.8 154 66.2
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 5.2e-55 218.0 150 66.7
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 2.0e-54 216.1 144 68.8
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 5.8e-54 214.5 148 68.9
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 5.8e-54 214.5 148 66.9
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 7.5e-54 214.2 154 62.3
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 1.3e-53 213.4 148 65.5
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 1.3e-53 213.4 154 65.6
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 1.7e-53 213.0 144 67.4
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 1.7e-53 213.0 148 66.2
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 1.7e-53 213.0 148 64.2
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 1.7e-53 213.0 157 61.8
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 1.7e-53 213.0 154 61.0
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 2.9e-53 212.2 148 65.5
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 2.9e-53 212.2 154 61.7
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 2.9e-53 212.2 154 61.7
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 2.9e-53 212.2 144 68.8
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 3.7e-53 211.8 148 65.5
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 4.9e-53 211.5 155 65.8
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 4.9e-53 211.5 154 62.3
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 6.4e-53 211.1 150 64.7
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 8.3e-53 210.7 148 65.5
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 1.1e-52 210.3 150 64.7
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 1.1e-52 210.3 153 61.4
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 1.4e-52 209.9 147 64.6
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 1.4e-52 209.9 148 64.9
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 1.4e-52 209.9 148 65.5
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 1.4e-52 209.9 148 63.5
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 1.9e-52 209.5 151 64.2
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 1.9e-52 209.5 154 62.3
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 1.9e-52 209.5 153 62.7
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 1.9e-52 209.5 148 64.9
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 2.4e-52 209.1 152 64.5
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 2.4e-52 209.1 144 66.0
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 3.2e-52 208.8 154 62.3
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 3.2e-52 208.8 153 62.1
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 4.1e-52 208.4 154 62.3
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 4.1e-52 208.4 158 61.4
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 4.1e-52 208.4 158 60.8
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 4.1e-52 208.4 154 59.7
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 5.4e-52 208.0 154 61.7
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 5.4e-52 208.0 154 64.9
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 7.1e-52 207.6 155 65.2
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 7.1e-52 207.6 148 64.9
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 9.2e-52 207.2 153 62.7
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 9.2e-52 207.2 158 62.0
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 1.2e-51 206.8 148 64.2
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 1.6e-51 206.5 147 66.0
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.6e-51 206.5 146 65.1
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.6e-51 206.5 146 65.1
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 1.6e-51 206.5 153 64.1
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 2.1e-51 206.1 154 62.3
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 2.7e-51 205.7 148 62.2
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 2.7e-51 205.7 147 65.3
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 2.7e-51 205.7 154 60.4
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 3.5e-51 205.3 159 62.3
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 4.6e-51 204.9 155 64.5
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 6.0e-51 204.5 150 63.3
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 6.0e-51 204.5 148 60.8
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 7.8e-51 204.1 153 61.4
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 7.8e-51 204.1 144 63.2
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 7.8e-51 204.1 155 63.9
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 7.8e-51 204.1 148 63.5
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 1.3e-50 203.4 148 64.2
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 3.0e-50 202.2 147 64.6
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 3.9e-50 201.8 150 63.3
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 8.6e-50 200.7 147 62.6
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 1.1e-49 200.3 157 60.5
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 1.1e-49 200.3 147 63.9
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 3.3e-49 198.7 142 64.1
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 5.6e-49 198.0 150 58.7
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 1.6e-48 196.4 144 61.1
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 1.6e-48 196.4 144 60.4
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 3.6e-48 195.3 148 60.1
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 6.2e-48 194.5 150 59.3
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 1.1e-47 193.7 155 60.0
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 6.8e-47 191.0 150 58.7
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 6.8e-47 191.0 149 57.7
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 8.9e-47 190.7 147 60.5
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 2.0e-46 189.5 146 58.9
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 3.4e-46 188.7 150 58.0
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 4.4e-46 188.3 150 58.0
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 7.6e-46 187.6 148 57.4
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 1.3e-45 186.8 123 69.1
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 3.8e-45 185.3 142 58.5
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 4.2e-44 181.8 149 56.4
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 7.1e-44 181.0 149 53.7
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 5.1e-42 174.9 147 54.4
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 7.3e-41 171.0 121 64.5
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 1.8e-39 166.4 121 65.3
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 2.6e-38 162.5 159 47.2
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 2.4e-36 156.0 149 49.7
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 1.6e-35 153.3 148 52.0
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 1.7e-34 149.8 97 69.1
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 1.7e-34 149.8 132 54.5
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.1e-33 147.1 121 55.4
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 2.5e-33 146.0 146 50.7
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 5.6e-33 144.8 145 49.7
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 6.9e-31 137.9 110 60.9
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 1.5e-30 136.7 133 52.6
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 6.4e-29 131.3 104 56.7
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 6.4e-29 131.3 142 45.8
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 7.1e-28 127.9 145 42.8
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 1.8e-26 123.2 141 46.1
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 1.3e-24 117.1 97 52.6
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 6.9e-23 111.3 149 38.9
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 9.9e-22 107.5 85 58.8
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 6.4e-21 104.8 84 56.0
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 1.1e-20 104.0 143 39.2
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 2.3e-18 96.3 75 54.7


User provided reference genes

Program Settings