Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 8.9e-88 327.0 178 100.0
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 3.6e-81 305.1 180 94.4
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 3.8e-70 268.5 181 83.4
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 4.9e-70 268.1 179 83.8
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 4.1e-69 265.0 186 81.2
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 5.4e-69 264.6 182 82.4
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 2.1e-68 262.7 181 80.7
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.0e-67 260.4 182 81.3
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 1.3e-67 260.0 182 80.8
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 9.6e-66 253.8 181 82.3
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 9.6e-66 253.8 181 81.8
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 6.9e-64 247.7 183 79.8
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 6.9e-64 247.7 183 79.8
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 6.9e-64 247.7 183 79.8
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 5.8e-63 244.6 182 78.6
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 9.9e-63 243.8 182 78.6
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 7.3e-58 227.6 221 63.3
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 9.3e-53 210.7 185 68.1
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.9e-50 203.0 184 64.1
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 1.3e-49 200.3 139 80.6
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 9.3e-37 157.5 184 51.1
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 1.3e-35 153.7 110 70.0
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 3.0e-35 152.5 186 52.2
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 3.9e-35 152.1 190 49.5
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 3.9e-35 152.1 104 75.0
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 3.9e-35 152.1 189 52.4
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 5.1e-35 151.8 104 74.0
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 6.7e-35 151.4 186 50.5
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.1e-34 150.6 186 53.2
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 1.1e-34 150.6 179 52.0
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 1.5e-34 150.2 183 50.8
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 2.5e-34 149.4 114 69.3
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 3.3e-34 149.1 107 71.0
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.3e-34 149.1 183 53.6
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 4.3e-34 148.7 185 51.9
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 5.7e-34 148.3 184 51.6
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 7.4e-34 147.9 183 50.8
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 7.4e-34 147.9 181 53.0
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 9.7e-34 147.5 186 52.2
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 9.7e-34 147.5 186 52.2
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 1.3e-33 147.1 204 50.5
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 1.6e-33 146.7 128 62.5
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 2.2e-33 146.4 127 63.0
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 2.2e-33 146.4 129 62.0
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 2.2e-33 146.4 180 50.0
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 2.8e-33 146.0 104 73.1
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 3.7e-33 145.6 194 48.5
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 3.7e-33 145.6 94 75.5
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 4.8e-33 145.2 197 49.2
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 4.8e-33 145.2 92 78.3
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 4.8e-33 145.2 98 77.6
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 4.8e-33 145.2 181 51.9
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 4.8e-33 145.2 193 51.8
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 6.3e-33 144.8 182 48.9
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 8.2e-33 144.4 97 72.2
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 8.2e-33 144.4 104 73.1
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 8.2e-33 144.4 115 67.0
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 1.1e-32 144.1 82 95.1
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 1.1e-32 144.1 180 51.1
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.1e-32 144.1 180 51.1
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 1.4e-32 143.7 190 48.9
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 1.8e-32 143.3 180 50.6
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 1.8e-32 143.3 179 49.7
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 3.1e-32 142.5 176 48.9
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 5.3e-32 141.7 195 48.7
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 9.0e-32 141.0 176 52.3
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 1.2e-31 140.6 97 75.3
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.2e-31 140.6 182 50.5
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 1.2e-31 140.6 122 62.3
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 1.5e-31 140.2 179 49.2
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 2.0e-31 139.8 95 71.6
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 2.0e-31 139.8 197 48.2
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 2.0e-31 139.8 181 50.3
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 2.6e-31 139.4 91 78.0
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 2.6e-31 139.4 91 78.0
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 3.4e-31 139.0 95 73.7
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 4.5e-31 138.7 173 49.1
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 4.5e-31 138.7 194 47.4
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 4.5e-31 138.7 129 58.1
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 7.6e-31 137.9 187 49.2
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.0e-30 137.5 190 45.3
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.7e-30 136.7 166 51.8
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 2.2e-30 136.3 181 49.2
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.2e-30 136.3 190 45.8
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 2.9e-30 136.0 192 46.9
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 5.0e-30 135.2 101 69.3
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 5.0e-30 135.2 190 45.8
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 5.0e-30 135.2 101 67.3
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 6.5e-30 134.8 132 57.6
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 8.5e-30 134.4 116 60.3
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 8.5e-30 134.4 202 44.6
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 8.5e-30 134.4 115 62.6
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 1.4e-29 133.7 115 62.6
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 5.5e-29 131.7 185 45.9
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 9.3e-29 131.0 97 71.1
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 9.3e-29 131.0 112 61.6
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.7e-28 129.4 183 44.3
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 7.9e-28 127.9 101 65.3
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 1.3e-27 127.1 92 68.5
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 1.8e-27 126.7 184 48.4
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 3.0e-27 125.9 83 73.5
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 1.1e-26 124.0 177 45.2
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 2.5e-26 122.9 102 61.8
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.3e-26 122.1 88 69.3
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 7.4e-26 121.3 106 61.3
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.3e-25 120.6 197 43.1
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 1.7e-25 120.2 212 41.0
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 6.9e-24 114.8 77 71.4
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 1.5e-23 113.6 78 70.5
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 1.1e-21 107.5 153 43.1
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 1.9e-21 106.7 92 56.5
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 4.7e-20 102.1 72 69.4
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.8e-19 100.1 86 59.3
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 2.3e-19 99.8 73 67.1
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 5.1e-19 98.6 84 58.3
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.1e-18 97.4 86 55.8
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 5.7e-18 95.1 110 50.0
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 7.7e-15 84.7 59 72.9
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 8.5e-14 81.3 105 50.5
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.5e-13 79.7 150 42.7
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 4.2e-13 79.0 133 45.1
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 7.2e-13 78.2 61 68.9
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 8.0e-12 74.7 61 67.2
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 2.3e-11 73.2 107 34.6
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 2.3e-11 73.2 144 36.1
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 5.7e-10 68.6 42 81.0
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 9.7e-10 67.8 118 39.8
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 2.2e-09 66.6 123 42.3
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.4e-08 63.9 115 31.3
AagrBONN_evm.TU.Sc2ySwM_368.656 Anthoceros agrestis HOM05D005889 ORTHO05D007495 1.8e-08 63.5 62 51.6
Gorai.009G308300 Gossypium raimondii HOM05D001962 ORTHO05D019237 2.6e-07 59.7 122 40.2
Gohir.A13G059250 Gossypium hirsutum HOM05D001962 ORTHO05D019237 1.0e-06 57.8 177 34.5
Gohir.A08G189616 Gossypium hirsutum HOM05D001962 ORTHO05D019237 2.2e-06 56.6 177 34.5
Gohir.D05G332600 Gossypium hirsutum HOM05D001962 ORTHO05D019237 2.2e-06 56.6 100 42.0
Gohir.D12G031850 Gossypium hirsutum HOM05D001962 ORTHO05D019237 2.9e-06 56.2 66 54.5
Gorai.N013200 Gossypium raimondii HOM05D001962 ORTHO05D019237 8.5e-06 54.7 123 38.2


User provided reference genes

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