Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p02680 Brassica napus HOM05D006084 ORTHO05D007449 1.1e-63 246.5 125 100.0
BraA02t05237Z Brassica rapa HOM05D006084 ORTHO05D007449 1.1e-63 246.5 125 100.0
BcaC03g13452 Brassica carinata HOM05D006084 ORTHO05D007449 2.9e-61 238.4 125 96.0
C02p07250 Brassica napus HOM05D006084 ORTHO05D007449 2.9e-61 238.4 125 96.0
BolC2t06657H Brassica oleracea HOM05D006084 ORTHO05D007449 2.9e-61 238.4 125 96.0
A03p06720 Brassica napus HOM05D006084 ORTHO05D007449 5.0e-61 237.7 125 95.2
Sp6g29330 Schrenkiella parvula HOM05D006084 ORTHO05D007449 8.5e-61 236.9 125 95.2
Thhalv10015025m.g Eutrema salsugineum HOM05D006084 ORTHO05D007449 2.5e-60 235.3 125 93.6
BraA03t10005Z Brassica rapa HOM05D006084 ORTHO05D007449 3.2e-60 235.0 125 94.4
BcaB01g05101 Brassica carinata HOM05D006084 ORTHO05D007449 4.2e-60 234.6 125 94.4
C03p07740 Brassica napus HOM05D006084 ORTHO05D007449 4.2e-60 234.6 125 94.4
BolC3t13274H Brassica oleracea HOM05D006084 ORTHO05D007449 4.2e-60 234.6 125 94.4
BcaNung03101 Brassica carinata HOM05D006084 ORTHO05D007449 1.6e-59 232.6 120 97.5
AT5G14710 Arabidopsis thaliana HOM05D006084 ORTHO05D007449 1.0e-58 229.9 125 92.0
CARHR198600 Cardamine hirsuta HOM05D006084 ORTHO05D007449 1.0e-58 229.9 125 91.2
AL6G25480 Arabidopsis lyrata HOM05D006084 ORTHO05D007449 2.3e-58 228.8 125 92.0
Carub.0006s1288 Capsella rubella HOM05D006084 ORTHO05D007449 5.2e-58 227.6 125 91.2
Aa31LG11G14750 Aethionema arabicum HOM05D006084 ORTHO05D007449 1.4e-55 219.5 125 87.2
BcaC04g19017 Brassica carinata HOM05D006084 ORTHO05D007449 7.0e-55 217.2 118 92.4
THA.LOC104821076 Tarenaya hassleriana HOM05D006084 ORTHO05D007449 2.6e-54 215.3 125 84.0
C09p62430 Brassica napus HOM05D006084 ORTHO05D007449 8.8e-50 200.3 108 91.7
BolC9t59081H Brassica oleracea HOM05D006084 ORTHO05D007449 2.2e-48 195.7 108 89.8
Haze_14684 Corylus avellana HOM05D006084 ORTHO05D007449 2.4e-47 192.2 124 75.0
Rhsim08G0053800 Rhododendron simsii HOM05D006084 ORTHO05D007449 7.0e-47 190.7 125 74.4
Actinidia35746 Actinidia chinensis HOM05D006084 ORTHO05D007449 9.1e-47 190.3 124 76.6
Dinv33481 Davidia involucrata HOM05D006084 ORTHO05D007449 1.2e-46 189.9 118 77.1
Atru.chr6.2220 Acer truncatum HOM05D006084 ORTHO05D007449 1.6e-46 189.5 125 75.2
MD17G1033600 Malus domestica HOM05D006084 ORTHO05D007449 3.5e-46 188.3 119 75.6
Cfa007418 Carpinus fangiana HOM05D006084 ORTHO05D007449 4.5e-46 188.0 125 73.6
Prupe.3G286100 Prunus persica HOM05D006084 ORTHO05D007449 4.5e-46 188.0 119 76.5
Aqoxy3G02941 Aquilegia oxysepala HOM05D006084 ORTHO05D007449 5.9e-46 187.6 124 73.4
Manes.17G116000 Manihot esculenta HOM05D006084 ORTHO05D007449 7.7e-46 187.2 125 75.2
CSS0000489 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 2.2e-45 185.7 118 77.1
CSS0035017 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 2.2e-45 185.7 118 77.1
TAR371G1194 Trochodendron aralioides HOM05D006084 ORTHO05D007449 2.2e-45 185.7 118 75.4
Ca_16579_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 2.9e-45 185.3 123 74.0
QL02p076043 Quercus lobata HOM05D006084 ORTHO05D007449 2.9e-45 185.3 124 71.0
QL02p076078 Quercus lobata HOM05D006084 ORTHO05D007449 2.9e-45 185.3 124 71.0
RcHm_v2.0_Chr2g0172221 Rosa chinensis HOM05D006084 ORTHO05D007449 3.8e-45 184.9 121 75.2
Thecc.04G011100 Theobroma cacao HOM05D006084 ORTHO05D007449 3.8e-45 184.9 125 71.2
HanXRQChr07g0198791 Helianthus annuus HOM05D006084 ORTHO05D007449 6.5e-45 184.1 124 73.4
Eucgr.I01785 Eucalyptus grandis HOM05D006084 ORTHO05D007449 8.5e-45 183.7 125 70.4
Medtr3g088470 Medicago truncatula HOM05D006084 ORTHO05D007449 1.1e-44 183.3 123 73.2
CiPaw.03G039200 Carya illinoinensis HOM05D006084 ORTHO05D007449 1.5e-44 183.0 125 72.0
FvH4_6g50830 Fragaria vesca HOM05D006084 ORTHO05D007449 1.5e-44 183.0 120 75.8
CDE08G0643 Ceratophyllum demersum HOM05D006084 ORTHO05D007449 2.5e-44 182.2 125 68.8
Gohir.A07G221200 Gossypium hirsutum HOM05D006084 ORTHO05D007449 2.5e-44 182.2 125 69.6
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 4.2e-44 181.4 120 75.0
FAN14G2625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 4.2e-44 181.4 120 75.0
TPR.G13476 Trifolium pratense HOM05D006084 ORTHO05D007449 9.4e-44 180.3 125 72.0
ECA238G3069 Erigeron canadensis HOM05D006084 ORTHO05D007449 1.2e-43 179.9 124 73.4
Gohir.D07G227900 Gossypium hirsutum HOM05D006084 ORTHO05D007449 3.6e-43 178.3 125 69.6
Hma1.2p1_0846F.1_g227700 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 3.6e-43 178.3 118 72.9
Lj1g0023236 Lotus japonicus HOM05D006084 ORTHO05D007449 4.7e-43 177.9 118 74.6
Potri.001G349500 Populus trichocarpa HOM05D006084 ORTHO05D007449 6.1e-43 177.6 125 68.8
FAN05G5625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.0e-42 176.8 118 74.6
HanXRQChr14g0450361 Helianthus annuus HOM05D006084 ORTHO05D007449 1.4e-42 176.4 119 73.1
ATR1096G027 Amborella trichopoda HOM05D006084 ORTHO05D007449 1.8e-42 176.0 124 68.5
CAN.G206.22 Capsicum annuum HOM05D006084 ORTHO05D007449 1.8e-42 176.0 119 70.6
ATR0730G058 Amborella trichopoda HOM05D006084 ORTHO05D007449 2.3e-42 175.6 118 72.9
COL.COLO4_28991 Corchorus olitorius HOM05D006084 ORTHO05D007449 4.0e-42 174.9 142 64.1
Lalb_Chr10g0093921 Lupinus albus HOM05D006084 ORTHO05D007449 5.2e-42 174.5 118 74.6
Hund02345 Selenicereus undatus HOM05D006084 ORTHO05D007449 6.8e-42 174.1 125 67.2
GSVIVG01032459001 Vitis vinifera HOM05D006084 ORTHO05D007449 8.8e-42 173.7 119 70.6
Glyma.04G247000 Glycine max HOM05D006084 ORTHO05D007449 1.2e-41 173.3 124 68.5
PSO566G0352 Papaver somniferum HOM05D006084 ORTHO05D007449 1.2e-41 173.3 119 71.4
Sed0018290 Sechium edule HOM05D006084 ORTHO05D007449 1.2e-41 173.3 125 68.0
Sc03g0007970 Simmondsia chinensis HOM05D006084 ORTHO05D007449 1.2e-41 173.3 125 64.8
PSO782G1469 Papaver somniferum HOM05D006084 ORTHO05D007449 1.5e-41 172.9 120 72.5
PSO210G7688 Papaver somniferum HOM05D006084 ORTHO05D007449 3.4e-41 171.8 120 69.2
HPP92_022049 Vanilla planifolia HOM05D006084 ORTHO05D007449 5.7e-41 171.0 123 65.9
arahy.Tifrunner.gnm1.ann1.DMWP0X Arachis hypogaea HOM05D006084 ORTHO05D007449 7.5e-41 170.6 118 73.7
Cc07_g02120 Coffea canephora HOM05D006084 ORTHO05D007449 7.5e-41 170.6 118 71.2
CsaV3_5G027340 Cucumis sativus L. HOM05D006084 ORTHO05D007449 7.5e-41 170.6 125 66.4
Glyma.06G115700 Glycine max HOM05D006084 ORTHO05D007449 7.5e-41 170.6 124 66.1
TWI12G0619 Tripterygium wilfordii HOM05D006084 ORTHO05D007449 7.5e-41 170.6 125 68.8
CANSAT64G0964 Cannabis sativa HOM05D006084 ORTHO05D007449 9.8e-41 170.2 123 68.3
Phvul.009G127800 Phaseolus vulgaris HOM05D006084 ORTHO05D007449 9.8e-41 170.2 124 67.7
PGR142G2538 Punica granatum HOM05D006084 ORTHO05D007449 9.8e-41 170.2 113 71.7
arahy.Tifrunner.gnm1.ann1.2LS7ZQ Arachis hypogaea HOM05D006084 ORTHO05D007449 2.8e-40 168.7 118 72.9
PGSC0003DMG400000490 Solanum tuberosum HOM05D006084 ORTHO05D007449 2.8e-40 168.7 117 69.2
arahy.Tifrunner.gnm1.ann1.48HX9C Arachis hypogaea HOM05D006084 ORTHO05D007449 8.3e-40 167.2 118 72.0
MELO3C005689.2 Cucumis melo HOM05D006084 ORTHO05D007449 8.3e-40 167.2 125 65.6
Migut.H00108 Erythranthe guttata HOM05D006084 ORTHO05D007449 2.4e-39 165.6 120 71.7
MSTRG.3166 Avicennia marina HOM05D006084 ORTHO05D007449 5.4e-39 164.5 120 66.7
Sopen02g031550 Solanum pennellii HOM05D006084 ORTHO05D007449 7.0e-39 164.1 117 68.4
Oeu004718.1 Olea europaea HOM05D006084 ORTHO05D007449 2.7e-38 162.2 120 69.2
Hma1.2p1_0056F.1_g031653 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 7.7e-38 160.6 105 72.4
SGA_v2.0_scaffold2848G54225 Striga asiatica HOM05D006084 ORTHO05D007449 1.3e-37 159.8 120 66.7
Hma1.2p1_1415F.1_g281960 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 5.0e-37 157.9 105 72.4
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 8.6e-37 157.1 106 73.6
ClCG09G019010 Citrullus lanatus HOM05D006084 ORTHO05D007449 1.1e-36 156.8 147 56.5
Os10g0395500 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 3.3e-36 155.2 127 59.8
unitig_746.g26552 Utricularia gibba HOM05D006084 ORTHO05D007449 5.5e-36 154.5 118 64.4
Zm00001eb048120 Zea mays HOM05D006084 ORTHO05D007449 1.6e-35 152.9 119 62.2
Gorai.001G262800 Gossypium raimondii HOM05D006084 ORTHO05D007449 2.8e-35 152.1 107 68.2
Peaxi162Scf00129g01228 Petunia axillaris HOM05D006084 ORTHO05D007449 2.8e-35 152.1 105 70.5
arahy.Tifrunner.gnm1.ann1.GQ5XJ3 Arachis hypogaea HOM05D006084 ORTHO05D007449 3.6e-35 151.8 135 61.5
ClCG00G003490 Citrullus lanatus HOM05D006084 ORTHO05D007449 3.6e-35 151.8 145 55.9
MBI19_g17406_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 5.2e-34 147.9 130 58.5
EL10Ac3g07214 Beta vulgaris HOM05D006084 ORTHO05D007449 1.2e-33 146.7 113 64.6
MBI19_g07248_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 1.7e-32 142.9 132 57.6
Nn3g16859 Nelumbo nucifera HOM05D006084 ORTHO05D007449 1.7e-32 142.9 118 63.6
Mapoly0005s0179 Marchantia polymorpha HOM05D006084 ORTHO05D007449 2.2e-32 142.5 120 59.2
Pp3c26_1260 Physcomitrium patens HOM05D006084 ORTHO05D007449 4.9e-32 141.4 127 52.8
Lsat_1_v5_gn_2_91880 Lactuca sativa HOM05D006084 ORTHO05D007449 2.4e-31 139.0 119 61.3
Sabra16G0228900 Salix brachista HOM05D006084 ORTHO05D007449 4.1e-31 138.3 217 40.1
SHI16396 Sapria himalayana HOM05D006084 ORTHO05D007449 7.0e-31 137.5 101 66.3
Cpa.g.c30698.2 Carica papaya HOM05D006084 ORTHO05D007449 5.9e-30 134.4 88 75.0
Duzib264G1216 Durio zibethinus HOM05D006084 ORTHO05D007449 2.9e-29 132.1 89 68.5
AUR62031990 Chenopodium quinoa HOM05D006084 ORTHO05D007449 6.6e-29 131.0 125 55.2
BraA10t44460Z Brassica rapa HOM05D006084 ORTHO05D007449 9.5e-28 127.1 90 74.4
Nitab4.5_0007141g0020 Nicotiana tabacum HOM05D006084 ORTHO05D007449 1.4e-26 123.2 107 59.8
SMO367G0706 Selaginella moellendorffii HOM05D006084 ORTHO05D007449 3.0e-26 122.1 105 58.1
DCAR_011237 Daucus carota HOM05D006084 ORTHO05D007449 7.5e-25 117.5 113 54.9
Ca_03224_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 9.8e-25 117.1 72 76.4
Ciclev10017692m.g Citrus clementina HOM05D006084 ORTHO05D007449 2.2e-24 115.9 68 79.4
Solyc02g086780.4 Solanum lycopersicum HOM05D006084 ORTHO05D007449 1.1e-23 113.6 81 70.4
AUR62030334 Chenopodium quinoa HOM05D006084 ORTHO05D007449 1.7e-21 106.3 74 64.9
CBR_g5628 Chara braunii HOM05D006084 ORTHO05D007449 1.1e-20 103.6 128 43.8
Nitab4.5_0006281g0070 Nicotiana tabacum HOM05D006084 ORTHO05D007449 3.3e-20 102.1 74 68.9
Cre13.g571000 Chlamydomonas reinhardtii HOM05D006084 ORTHO05D007449 2.1e-19 99.4 117 41.9
AagrBONN_evm.TU.Sc2ySwM_228.3157 Anthoceros agrestis HOM05D006084 ORTHO05D007449 6.8e-18 94.4 81 51.9
A10p23960 Brassica napus HOM05D006084 ORTHO05D007449 1.2e-17 93.6 144 45.1
arahy.Tifrunner.gnm1.ann1.2H702Y Arachis hypogaea HOM05D006084 ORTHO05D007449 1.5e-17 93.2 61 73.8
MELO3C033557.2 Cucumis melo HOM05D006084 ORTHO05D007449 1.1e-15 87.0 95 50.5
Os01g0339600 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 3.2e-15 85.5 70 60.0
Dinv35076 Davidia involucrata HOM05D006084 ORTHO05D007449 1.5e-12 76.6 45 77.8
SEGI_25092 Sequoiadendron giganteum HOM05D006084 ORTHO05D007449 1.1e-10 70.5 64 48.4
MCO07G269 Micromonas commoda HOM05D006084 ORTHO05D007449 2.1e-06 56.2 106 34.0


User provided reference genes

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