Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 2.5e-119 432.6 292 100.0
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 1.1e-100 370.5 295 87.8
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 2.0e-100 369.8 296 85.1
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 3.3e-100 369.0 292 89.4
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 1.7e-99 366.7 269 92.2
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 1.2e-86 323.9 243 81.1
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 2.1e-86 323.2 247 81.0
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 3.6e-86 322.4 298 72.1
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 5.2e-85 318.5 276 72.1
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 6.8e-85 318.2 292 72.3
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 8.8e-85 317.8 262 82.8
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 1.2e-84 317.4 295 72.9
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 3.4e-84 315.8 292 71.9
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 2.8e-83 312.8 299 71.6
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 3.7e-83 312.4 276 73.9
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.4e-82 310.5 277 75.8
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 4.3e-79 298.9 236 77.1
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 9.5e-79 297.7 269 68.8
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 3.6e-78 295.8 276 71.0
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 8.3e-67 258.1 149 87.9
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 8.6e-56 221.5 240 66.2
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 4.3e-55 219.2 131 84.0
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 2.1e-54 216.9 233 54.5
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 8.1e-54 214.9 222 57.2
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 1.1e-53 214.5 214 62.1
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 5.2e-53 212.2 248 54.8
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 8.9e-53 211.5 226 56.6
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 8.9e-53 211.5 213 60.1
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 8.9e-53 211.5 214 57.9
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 1.2e-52 211.1 219 60.7
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 1.5e-52 210.7 231 59.7
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 2.6e-52 209.9 224 61.6
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 5.8e-52 208.8 224 58.0
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 7.6e-52 208.4 242 54.5
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 2.9e-51 206.5 242 63.2
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 3.8e-51 206.1 237 51.5
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 3.8e-51 206.1 219 66.7
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 4.9e-51 205.7 212 67.9
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 1.4e-50 204.1 224 52.7
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 3.2e-50 203.0 234 55.6
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 4.1e-50 202.6 226 50.0
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 4.1e-50 202.6 244 58.2
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 5.4e-50 202.2 214 56.5
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 7.1e-50 201.8 220 50.9
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 7.1e-50 201.8 229 49.8
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 1.6e-49 200.7 216 57.4
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 2.1e-49 200.3 238 53.4
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 2.7e-49 199.9 205 67.8
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 3.5e-49 199.5 235 54.5
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 4.6e-49 199.1 235 53.2
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 4.6e-49 199.1 233 62.7
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 6.0e-49 198.7 228 51.3
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 7.8e-49 198.4 207 52.7
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 7.8e-49 198.4 214 57.5
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 1.0e-48 198.0 231 48.9
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 1.7e-48 197.2 243 56.4
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 2.3e-48 196.8 241 53.1
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 2.3e-48 196.8 211 54.0
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 2.3e-48 196.8 224 62.5
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 3.0e-48 196.4 224 53.6
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 3.9e-48 196.1 227 60.4
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 3.9e-48 196.1 208 57.7
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 5.1e-48 195.7 237 57.4
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 6.6e-48 195.3 232 50.9
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 6.6e-48 195.3 221 46.6
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 8.6e-48 194.9 230 49.1
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 1.5e-47 194.1 223 61.4
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 1.5e-47 194.1 222 50.5
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 1.9e-47 193.7 209 58.9
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 2.5e-47 193.4 249 55.4
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 3.3e-47 193.0 221 56.1
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 7.3e-47 191.8 211 56.9
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 7.3e-47 191.8 217 58.5
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 9.6e-47 191.4 250 53.2
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 1.2e-46 191.0 205 57.6
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 1.6e-46 190.7 223 57.4
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 2.8e-46 189.9 208 53.4
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 2.8e-46 189.9 210 55.2
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 6.2e-46 188.7 216 51.9
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 8.1e-46 188.3 237 56.5
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 1.4e-45 187.6 220 56.8
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 3.1e-45 186.4 248 45.6
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 3.1e-45 186.4 237 47.3
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 3.1e-45 186.4 265 56.6
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 4.0e-45 186.0 214 55.1
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 5.2e-45 185.7 245 50.6
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 6.9e-45 185.3 245 56.3
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 8.9e-45 184.9 253 54.5
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 1.5e-44 184.1 204 53.9
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 2.0e-44 183.7 229 54.1
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 2.6e-44 183.3 196 59.2
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 4.4e-44 182.6 232 50.0
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 5.8e-44 182.2 224 46.4
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 7.6e-44 181.8 222 54.5
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 9.9e-44 181.4 246 52.4
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 9.9e-44 181.4 219 55.7
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 1.7e-43 180.6 222 55.0
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 4.9e-43 179.1 231 50.6
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.9e-42 177.2 222 50.9
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 3.5e-41 172.9 229 44.5
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 7.8e-41 171.8 107 71.0
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 1.7e-40 170.6 209 46.4
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 8.7e-40 168.3 227 41.4
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 4.3e-39 166.0 225 49.3
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 7.3e-39 165.2 227 46.7
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 1.6e-38 164.1 204 42.6
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 2.8e-38 163.3 117 62.4
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 5.3e-37 159.1 116 64.7
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.2e-36 157.9 138 58.0
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 1.5e-36 157.5 106 67.9
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 5.8e-36 155.6 106 67.9
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 5.8e-36 155.6 108 66.7
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 1.3e-35 154.5 121 60.3
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.7e-35 154.1 101 68.3
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 2.2e-35 153.7 108 64.8
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 4.9e-35 152.5 207 44.9
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.9e-34 150.6 101 67.3
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 1.9e-34 150.6 170 57.6
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 2.4e-34 150.2 112 65.2
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 9.3e-34 148.3 225 44.9
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.2e-33 147.9 192 54.2
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 1.6e-33 147.5 104 63.5
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 4.6e-33 146.0 108 61.1
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 4.6e-33 146.0 143 54.5
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 6.7e-32 142.1 102 62.7
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 8.7e-32 141.7 136 56.6
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 1.9e-31 140.6 115 58.3
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 5.6e-31 139.0 118 56.8
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 1.6e-30 137.5 102 59.8
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 2.1e-30 137.1 102 59.8
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 2.1e-30 137.1 102 59.8
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 6.2e-30 135.6 116 56.0
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 2.6e-28 130.2 91 64.8
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 1.3e-27 127.9 98 59.2
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 1.1e-26 124.8 85 64.7
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 2.4e-26 123.6 136 47.8
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 7.1e-26 122.1 235 40.4
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 9.3e-26 121.7 108 53.7
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 9.3e-26 121.7 86 61.6
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.6e-25 120.9 207 44.9
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 4.6e-25 119.4 91 58.2
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 6.0e-25 119.0 86 61.6
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 3.9e-24 116.3 242 37.6
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 3.7e-22 109.8 86 58.1
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 3.1e-21 106.7 109 52.3
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 1.5e-20 104.4 122 41.8
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 3.4e-20 103.2 237 39.2
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 7.6e-20 102.1 234 38.5
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 3.8e-19 99.8 79 62.0
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 7.9e-17 92.0 231 30.7
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.4e-13 80.5 112 42.0
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 7.6e-12 75.5 118 41.5
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 8.2e-06 55.5 65 40.0


User provided reference genes

Program Settings