Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 0.0e+00 1954.9 1013 100.0
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 0.0e+00 1770.4 1044 89.9
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 0.0e+00 1651.3 1061 84.9
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 0.0e+00 1598.9 1052 83.6
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 0.0e+00 1521.1 1061 79.9
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 0.0e+00 1411.4 1134 71.7
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 0.0e+00 1176.4 1111 64.2
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 0.0e+00 1077.8 1179 58.4
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 0.0e+00 1077.0 1200 57.5
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 7.6e-293 1010.7 1136 59.5
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 6.0e-290 1001.1 1161 58.2
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 7.9e-290 1000.7 1222 55.0
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 9.0e-286 987.3 1226 53.3
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 6.0e-282 974.5 1140 58.4
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 7.1e-275 951.0 1139 56.6
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 4.3e-272 941.8 1138 56.2
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 5.5e-251 871.7 1158 52.7
BcaNung06336 Brassica carinata HOM05D010678 ORTHO05D006673 1.2e-176 624.8 467 73.2
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.5e-147 528.1 1355 35.9
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 4.8e-130 469.9 1066 37.2
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 2.2e-37 162.2 1027 26.0
BcaC04g19101 Brassica carinata HOM05D010678 ORTHO05D006673 1.4e-36 159.5 100 74.0
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 4.1e-36 157.9 590 32.0
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 2.6e-35 155.2 677 30.7
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 7.7e-35 153.7 677 30.6
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 2.9e-34 151.8 1046 26.8
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 1.4e-33 149.4 1111 25.7
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 1.0e-31 143.3 1106 26.3
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 1.3e-29 136.3 559 30.4
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 8.2e-29 133.7 1064 26.2
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 2.4e-28 132.1 476 32.4
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 6.9e-28 130.6 302 37.7
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 6.9e-28 130.6 555 31.0
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 9.1e-28 130.2 1284 24.1
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 3.4e-27 128.3 585 29.7
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 3.4e-27 128.3 487 30.4
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.7e-26 125.9 538 29.9
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 2.9e-26 125.2 632 28.5
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 3.8e-26 124.8 1021 25.6
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 5.0e-26 124.4 419 33.7
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 6.5e-26 124.0 492 31.5
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 8.5e-26 123.6 416 34.1
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 1.4e-25 122.9 416 33.9
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 5.5e-25 120.9 490 29.6
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.2e-24 119.8 1113 25.0
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 8.0e-24 117.1 1070 24.7
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 1.0e-23 116.7 1150 24.4
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 1.8e-23 115.9 443 31.8
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 8.8e-23 113.6 563 29.7
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 2.6e-22 112.1 377 32.1
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 9.7e-22 110.2 645 27.0
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 1.3e-21 109.8 632 27.7
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 3.7e-21 108.2 1075 25.2
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 8.2e-21 107.1 570 27.2
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 1.1e-20 106.7 1053 25.4
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 1.4e-20 106.3 489 30.9
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 3.1e-20 105.1 710 28.0
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 5.3e-20 104.4 484 31.8
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 1.6e-19 102.8 284 32.4
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 3.5e-19 101.7 428 31.3
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 4.5e-19 101.3 1046 25.0
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 7.7e-19 100.5 523 29.4
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.0e-18 100.1 1053 25.2
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.3e-18 99.8 1055 24.6
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 2.2e-18 99.0 486 31.3
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 1.5e-17 96.3 1146 24.1
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 5.5e-17 94.4 1050 24.5
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 9.4e-17 93.6 1007 24.4
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 2.7e-16 92.0 503 30.4
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 6.1e-16 90.9 482 28.0
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.0e-15 90.1 1036 23.7
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 1.4e-15 89.7 461 31.2
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.4e-15 89.7 486 28.4
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 2.3e-15 89.0 1148 23.8
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 2.3e-15 89.0 673 27.8
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 4.0e-15 88.2 566 27.0
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 6.7e-15 87.4 1211 24.3
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 6.7e-15 87.4 519 27.7
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 9.7e-14 83.6 515 29.7
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 4.8e-13 81.3 541 28.7
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 1.8e-12 79.3 477 29.8
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 2.4e-12 79.0 1000 23.9
BcaNung01900 Brassica carinata HOM05D010678 ORTHO05D006673 7.0e-12 77.4 51 78.4
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 9.1e-12 77.0 643 26.6
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 4.5e-11 74.7 488 26.4
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 7.7e-11 73.9 1094 23.7
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 8.5e-10 70.5 604 24.8
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.1e-09 70.1 408 28.2
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 1.9e-09 69.3 376 29.5
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 3.2e-09 68.6 400 28.2
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.2e-08 66.6 290 28.6
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 1.8e-07 62.8 1138 23.3
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 4.0e-07 61.6 482 22.6
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.6e-06 58.9 340 29.4


User provided reference genes

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