Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 2101.2 1115 100.0
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 2093.9 1115 99.6
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 2052.7 1115 97.3
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 2030.8 1115 97.0
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 2026.9 1115 97.0
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1987.6 1120 93.0
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1928.3 1125 89.4
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1925.2 1125 89.2
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1917.5 1125 89.1
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1911.0 1129 89.3
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1909.8 1129 89.2
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1907.9 1125 88.7
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1907.9 1125 88.4
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1901.3 1129 88.9
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1898.2 1129 88.8
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1881.3 1125 88.0
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1854.3 1138 84.9
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1773.4 1129 81.5
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1746.1 1142 82.2
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1617.1 1135 72.9
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1605.5 1141 72.4
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1604.3 1140 72.3
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1601.6 1142 71.9
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1597.8 1128 72.6
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1597.4 1133 73.0
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1597.0 1134 71.9
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1594.3 1132 72.4
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1589.7 1142 71.7
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1585.9 1132 71.0
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1580.1 1130 70.6
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1580.1 1134 71.1
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1577.4 1131 70.9
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1576.2 1141 71.5
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1574.7 1135 70.4
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1572.0 1128 70.7
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1572.0 1128 70.6
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1569.7 1128 70.0
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1566.2 1128 70.1
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1565.4 1128 70.5
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1565.4 1130 71.8
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1563.5 1125 70.0
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1557.0 1136 69.5
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1546.9 1144 68.7
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1546.2 1128 69.1
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1545.8 1128 70.7
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1545.8 1134 69.3
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1542.3 1130 69.8
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1540.4 1182 68.2
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1538.5 1130 70.0
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1534.6 1135 68.7
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1532.3 1125 68.8
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1531.2 1138 69.2
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1528.5 1136 68.8
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1528.1 1137 68.8
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1526.9 1139 69.4
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1525.0 1123 69.0
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1524.6 1134 68.7
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1522.3 1123 68.0
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1518.8 1123 67.9
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1515.4 1136 67.3
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1507.3 1137 67.5
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1505.3 1136 68.1
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1494.9 1106 68.6
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1493.8 1128 67.4
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1493.8 1125 67.6
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1492.6 1144 67.0
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1491.5 1127 67.1
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1487.6 1137 66.8
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1487.2 1123 68.5
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1487.2 1116 66.8
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1486.9 1138 66.4
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1481.8 1138 67.0
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1475.7 1127 68.0
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1475.3 1125 67.3
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1474.9 1141 66.2
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1474.1 1136 67.4
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1470.7 1123 67.2
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1462.2 1140 65.4
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1459.1 1125 65.5
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1456.0 1125 65.6
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1455.3 1126 66.2
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1450.6 1012 74.1
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1450.3 1126 67.1
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1448.0 1130 65.7
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1446.0 1031 70.5
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1442.6 1073 68.0
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1440.6 1119 66.0
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1437.9 1147 65.1
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1437.9 1147 65.1
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1432.5 1097 67.5
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1431.8 1138 64.6
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1428.7 1131 65.3
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1407.5 1072 68.1
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1397.5 1072 66.4
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1394.8 1035 67.8
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1336.2 925 72.5
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1333.2 1122 63.1
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1320.8 1074 63.6
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1307.7 1041 64.5
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1300.0 1071 60.9
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1298.9 925 69.8
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1260.0 1071 59.9
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1241.9 1118 56.8
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1215.3 896 68.6
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1166.4 922 64.5
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1146.7 823 71.2
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1085.5 888 62.0
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1077.8 1072 52.0
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 1.1e-305 1053.5 1073 51.2
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 4.7e-304 1048.1 780 68.5
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 9.9e-294 1013.8 1072 49.7
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 3.5e-283 978.8 1069 48.6
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 9.3e-276 954.1 673 71.0
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 1.8e-266 923.3 759 62.5
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 8.5e-229 798.1 601 68.7
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.9e-228 797.0 909 49.9
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.0e-210 738.0 1086 40.5
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 6.8e-210 735.3 616 60.6
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 1.0e-152 545.4 366 73.2
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 8.5e-136 489.2 422 61.8
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 4.5e-129 466.8 430 57.4
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 7.5e-108 396.4 356 57.0
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 7.5e-100 369.8 1186 27.8
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 7.0e-90 336.7 317 57.7
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 8.9e-85 319.7 1146 27.0
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 8.6e-80 303.1 345 53.9
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 4.6e-73 280.8 365 45.8
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 7.3e-71 273.5 315 51.4
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 7.8e-65 253.4 333 45.9
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 1.4e-53 216.1 320 44.7
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 6.9e-29 134.0 150 51.3
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 9.0e-29 133.7 106 67.9
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 1.9e-26 125.9 70 78.6
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 3.2e-26 125.2 108 69.4
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 4.2e-26 124.8 666 22.4
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 9.3e-26 123.6 68 79.4
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 3.6e-25 121.7 86 74.4
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 2.5e-23 115.5 86 70.9
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 4.8e-06 58.2 79 40.5


User provided reference genes

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