Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 3.0e-80 301.6 135 100.0
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 3.0e-80 301.6 135 100.0
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 2.2e-78 295.4 135 97.8
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 2.2e-78 295.4 135 97.8
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 1.6e-76 289.3 135 95.6
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 7.7e-76 287.0 135 94.1
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 1.7e-75 285.8 135 94.8
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 1.7e-75 285.8 135 93.3
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 1.7e-75 285.8 135 94.1
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 2.9e-75 285.0 135 93.3
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 4.7e-73 277.7 135 92.6
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 2.3e-72 275.4 136 92.6
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 4.4e-71 271.2 136 90.4
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 4.4e-71 271.2 136 90.4
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 2.2e-70 268.9 135 86.7
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 8.3e-70 266.9 142 85.9
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 3.1e-69 265.0 135 87.4
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 3.7e-62 241.5 135 75.6
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 4.9e-62 241.1 135 76.3
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.4e-61 239.6 135 75.6
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 1.4e-61 239.6 135 75.6
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 1.4e-61 239.6 135 74.8
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 3.2e-61 238.4 135 75.6
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 3.2e-61 238.4 135 74.8
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 4.1e-61 238.0 135 75.6
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 1.2e-60 236.5 135 74.8
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 1.2e-60 236.5 135 75.6
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 2.0e-60 235.7 135 75.6
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 1.3e-59 233.0 147 70.7
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 2.3e-59 232.3 135 73.3
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 3.0e-59 231.9 134 73.1
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 3.0e-59 231.9 135 75.6
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 3.9e-59 231.5 148 68.9
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 5.0e-59 231.1 135 72.6
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 6.6e-59 230.7 135 72.6
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 8.6e-59 230.3 135 73.3
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 8.6e-59 230.3 135 74.1
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 1.5e-58 229.6 148 68.2
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.9e-58 229.2 135 71.9
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 1.9e-58 229.2 153 68.0
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 3.3e-58 228.4 147 68.7
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 3.3e-58 228.4 135 72.6
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 4.3e-58 228.0 150 68.7
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 5.6e-58 227.6 135 72.6
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.2e-57 226.5 135 71.1
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.6e-57 226.1 137 73.7
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.6e-57 226.1 137 73.7
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.1e-57 225.7 137 73.7
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.1e-57 225.7 135 71.1
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 2.1e-57 225.7 145 65.5
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 4.7e-57 224.6 133 70.7
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 4.7e-57 224.6 148 66.2
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 6.2e-57 224.2 146 67.8
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 8.0e-57 223.8 152 65.8
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.4e-56 223.0 150 65.3
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 1.8e-56 222.6 135 71.9
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 1.8e-56 222.6 153 66.7
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 2.3e-56 222.2 123 74.8
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 2.3e-56 222.2 153 66.7
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 3.1e-56 221.9 123 78.9
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 3.1e-56 221.9 144 67.4
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 4.0e-56 221.5 135 71.1
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 6.8e-56 220.7 135 71.1
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.2e-55 219.9 153 63.4
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.2e-55 219.9 159 61.6
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 1.2e-55 219.9 142 67.6
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 1.5e-55 219.5 123 75.6
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 1.5e-55 219.5 130 70.8
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 2.0e-55 219.2 133 70.7
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 7.5e-55 217.2 149 63.1
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 9.8e-55 216.9 149 63.8
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 9.8e-55 216.9 158 60.8
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.7e-54 216.1 133 72.2
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 1.7e-54 216.1 123 69.9
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 2.2e-54 215.7 135 69.6
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.9e-54 215.3 133 72.2
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.9e-54 214.5 135 70.4
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 4.9e-54 214.5 131 71.0
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 6.4e-54 214.2 150 61.3
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 1.1e-53 213.4 132 69.7
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 1.4e-53 213.0 147 63.3
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.9e-53 212.6 145 65.5
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 2.4e-53 212.2 122 72.1
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 2.4e-53 212.2 132 68.2
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 2.4e-53 212.2 133 68.4
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.2e-53 211.8 153 61.4
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.2e-52 209.9 130 69.2
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 2.7e-52 208.8 159 57.2
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 3.5e-52 208.4 150 60.7
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 4.6e-52 208.0 132 70.5
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 6.0e-52 207.6 144 61.1
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 7.8e-52 207.2 133 66.9
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 1.0e-51 206.8 123 68.3
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.3e-51 206.5 127 69.3
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 1.3e-51 206.5 126 67.5
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 1.3e-51 206.5 126 67.5
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 1.7e-51 206.1 122 69.7
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 8.6e-51 203.8 123 67.5
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 8.6e-51 203.8 138 63.8
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 4.3e-50 201.4 133 66.9
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 4.7e-49 198.0 135 67.4
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 1.1e-48 196.8 142 61.3
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.3e-48 195.7 120 68.3
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 6.8e-48 194.1 124 69.4
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 4.4e-47 191.4 130 65.4
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 3.7e-46 188.3 159 56.0
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 4.9e-46 188.0 155 54.8
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 3.2e-45 185.3 113 67.3
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 3.2e-45 185.3 113 67.3
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 2.5e-42 175.6 174 50.0
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 2.1e-41 172.6 123 60.2
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 5.8e-39 164.5 106 67.0
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.1e-37 160.2 116 56.9
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 6.0e-36 154.5 124 55.6
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 8.6e-35 150.6 124 54.8
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 1.1e-32 143.7 118 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.5e-31 139.8 144 45.8
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 4.6e-28 128.3 84 64.3
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 3.0e-27 125.6 72 72.2
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 3.1e-24 115.5 59 83.1
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 4.0e-24 115.2 58 81.0
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 8.7e-19 97.4 135 44.4
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 6.2e-17 91.3 114 43.0
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 1.4e-16 90.1 105 44.8
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 5.3e-16 88.2 57 64.9
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.2e-15 87.0 81 48.1
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 9.9e-15 84.0 80 47.5
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 1.7e-14 83.2 80 46.2
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 8.4e-14 80.9 74 50.0
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 4.6e-12 75.1 97 40.2
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 6.0e-12 74.7 111 36.9
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.8e-11 73.2 75 46.7
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 1.1e-10 70.5 102 37.3
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 1.6e-09 66.6 40 67.5
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.6e-09 66.6 49 57.1
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.4e-08 63.5 53 52.8
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 3.1e-08 62.4 57 49.1
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 4.0e-08 62.0 52 53.8
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 4.0e-08 62.0 52 53.8


User provided reference genes

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