Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 0.0e+00 1171.8 600 100.0
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 0.0e+00 1164.1 600 99.2
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 0.0e+00 1160.2 608 98.4
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 0.0e+00 1156.0 608 97.9
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 0.0e+00 1096.3 600 92.5
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 0.0e+00 1086.6 600 91.7
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 5.3e-310 1067.0 603 89.7
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 1.1e-304 1049.3 600 88.8
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 5.7e-304 1047.0 603 87.7
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 6.9e-302 1040.0 613 86.3
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 3.4e-301 1037.7 602 88.7
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 2.1e-298 1028.5 600 87.8
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 3.6e-298 1027.7 601 87.9
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 4.7e-274 947.6 523 92.2
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 1.5e-272 942.6 600 82.8
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.5e-267 926.0 529 88.7
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 2.4e-254 882.1 601 76.2
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 4.4e-224 781.6 603 63.8
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 9.3e-222 773.9 593 64.8
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 6.9e-217 757.7 603 62.9
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 9.0e-217 757.3 589 64.2
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 9.0e-217 757.3 592 63.9
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 3.8e-215 751.9 590 62.2
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 1.6e-213 746.5 588 62.9
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 1.5e-211 740.0 595 61.3
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 3.3e-211 738.8 594 62.3
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 7.4e-211 737.6 603 62.0
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 1.4e-209 733.4 603 61.7
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.7e-207 726.5 603 62.7
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 2.9e-207 725.7 603 62.5
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 2.9e-207 725.7 603 62.7
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 6.4e-207 724.5 596 60.4
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 2.4e-206 722.6 600 60.3
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 3.2e-206 722.2 575 63.0
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 4.2e-206 721.8 617 60.0
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 9.3e-206 720.7 577 63.4
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 2.1e-205 719.5 603 60.5
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 2.7e-205 719.2 596 60.1
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 2.3e-204 716.1 588 61.1
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 2.3e-204 716.1 615 58.0
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 4.3e-203 711.8 590 61.0
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 9.6e-203 710.7 598 60.4
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 1.6e-202 709.9 575 61.7
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 8.2e-202 707.6 595 60.2
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 1.1e-201 707.2 584 60.6
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 7.6e-200 701.0 601 59.1
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 1.0e-199 700.7 597 59.1
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 4.2e-198 695.3 514 65.4
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 9.3e-198 694.1 597 58.5
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 9.3e-198 694.1 599 59.4
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 4.6e-197 691.8 613 59.2
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.6e-197 691.8 599 58.8
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 6.0e-197 691.4 582 59.6
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 7.9e-197 691.0 588 59.0
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 7.9e-197 691.0 590 59.3
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.3e-196 690.3 603 58.4
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 3.9e-196 688.7 597 59.1
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 5.1e-196 688.3 586 59.2
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 1.9e-195 686.4 599 58.4
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 7.4e-195 684.5 585 59.1
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 9.7e-195 684.1 595 58.2
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.3e-194 683.7 597 58.3
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 1.6e-194 683.3 596 58.4
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 2.2e-194 682.9 597 58.1
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 2.8e-194 682.6 575 59.1
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 4.8e-194 681.8 549 61.6
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 1.5e-192 676.8 589 59.9
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 2.0e-192 676.4 592 57.6
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.3e-191 673.7 619 55.9
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 1.3e-191 673.7 783 47.3
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 5.0e-191 671.8 602 58.0
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 7.2e-190 667.9 613 56.4
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 3.6e-189 665.6 576 60.2
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 6.3e-186 654.8 597 57.1
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 1.1e-185 654.1 601 56.6
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.1e-185 654.1 602 54.8
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 1.4e-185 653.7 583 56.1
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 1.8e-185 653.3 514 61.9
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 5.3e-185 651.7 591 56.9
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 5.9e-184 648.3 587 57.2
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 7.7e-184 647.9 653 53.1
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 2.2e-183 646.4 597 56.4
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 2.3e-180 636.3 604 54.8
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 1.3e-178 630.6 574 56.1
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 4.1e-177 625.5 577 55.6
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 5.3e-177 625.2 603 53.7
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 2.6e-168 596.3 615 52.5
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 4.5e-168 595.5 485 59.6
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.0e-167 594.3 550 56.7
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 5.0e-167 592.0 580 52.9
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 9.4e-166 587.8 564 54.6
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.3e-159 567.4 625 49.8
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 9.4e-158 561.2 600 49.5
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 3.7e-146 522.7 469 56.9
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 3.1e-145 519.6 356 71.6
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 9.2e-145 518.1 604 45.9
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 7.5e-131 471.9 605 45.1
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 6.0e-120 435.6 388 56.4
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 2.8e-117 426.8 541 43.6
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 8.9e-116 421.8 537 43.8
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 5.8e-115 419.1 447 48.5
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 6.6e-111 405.6 300 66.0
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.4e-108 397.9 557 40.4
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 1.7e-106 391.0 514 40.7
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 2.3e-103 380.6 335 56.1
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 9.7e-78 295.4 282 54.6
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 2.4e-76 290.8 216 68.1
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 5.0e-74 283.1 411 40.4
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 8.8e-71 272.3 282 49.6
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 2.5e-70 270.8 216 62.5
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 3.7e-69 266.9 592 31.2
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 8.2e-69 265.8 380 36.1
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.1e-68 265.4 343 42.6
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 4.1e-60 236.9 181 65.2
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.5e-43 180.3 175 53.7
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 4.7e-40 170.2 108 80.6
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.4e-36 158.7 123 61.0
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.0e-35 154.8 116 69.0
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 3.5e-35 154.1 112 62.5
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.3e-29 135.6 112 56.2
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.5e-27 127.5 278 34.5
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 3.6e-24 117.5 372 27.2
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 6.1e-24 116.7 133 45.9
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 3.1e-23 114.4 108 51.9
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 8.9e-23 112.8 100 50.0
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 8.9e-23 112.8 565 22.8
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 8.3e-21 106.3 80 57.5
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 1.1e-20 105.9 80 57.5
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 4.1e-20 104.0 82 56.1
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 7.0e-20 103.2 128 40.6
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.8e-16 91.3 75 53.3
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.1e-15 89.4 124 37.9
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 4.0e-15 87.4 87 46.0
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.7e-13 82.0 103 44.7
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 1.6e-11 75.5 169 34.3
C03p06490 Brassica napus HOM05D005072 ORTHO05D006209 7.8e-11 73.2 52 69.2
AL3G48430 Arabidopsis lyrata HOM05D000229 ORTHO05D016563 5.6e-09 67.0 35 85.7
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 9.5e-09 66.2 253 22.9
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 6.2e-08 63.5 138 32.6
ECA233G4564 Erigeron canadensis HOM05D005072 ORTHO05D189103 5.2e-07 60.5 471 24.4
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 8.9e-07 59.7 58 55.2


User provided reference genes

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