Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1863.2 947 100.0
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1838.2 990 95.7
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1743.4 984 91.3
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1741.1 984 91.3
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1737.6 985 90.8
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1720.3 998 89.4
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1700.6 985 88.8
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1693.3 985 88.5
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1687.9 985 88.1
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1682.9 985 87.7
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1672.1 986 87.4
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1671.0 1005 86.0
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1669.4 983 86.7
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1669.1 986 87.2
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1652.1 1012 85.0
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1646.3 983 85.6
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1645.6 983 85.5
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1626.7 983 85.0
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1465.7 983 77.5
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1443.7 985 74.5
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1317.4 986 67.2
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1312.4 985 67.0
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1311.2 993 66.6
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1310.8 983 66.9
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1310.4 987 67.5
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1310.4 979 67.4
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1307.7 986 66.9
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1307.7 986 67.1
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1304.7 986 67.6
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1303.9 984 66.4
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1299.3 985 66.4
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1298.5 986 65.8
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1298.1 986 66.3
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1295.4 985 66.9
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1288.5 985 65.9
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1286.6 986 65.5
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1286.2 986 65.0
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1284.2 978 65.5
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1281.2 954 67.4
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1278.8 977 66.2
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1278.5 985 65.7
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1278.5 984 64.8
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1278.1 986 64.2
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1276.9 986 64.8
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1274.6 986 64.2
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1274.6 984 63.4
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1274.2 986 64.8
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1273.5 987 64.9
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1272.7 979 65.4
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1272.3 985 65.7
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1271.9 986 65.2
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1271.1 986 64.7
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1271.1 986 63.2
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1268.8 1009 63.5
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1266.9 986 63.4
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1266.5 984 63.4
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1266.1 985 65.1
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1265.4 984 63.2
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1265.4 985 63.9
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1265.0 986 63.4
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1265.0 987 63.7
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1263.8 987 64.2
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1261.1 984 63.2
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1260.4 986 62.9
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1260.0 987 64.1
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1259.2 984 63.5
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1258.0 987 63.9
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1257.7 986 63.0
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1256.5 989 63.2
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1253.8 987 63.9
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1253.0 984 64.4
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1252.7 986 62.9
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1252.3 984 64.4
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1250.3 984 64.2
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1242.6 987 63.2
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1240.3 987 63.1
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1239.9 986 63.1
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1232.2 984 61.9
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1230.3 984 62.2
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1227.6 986 62.2
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1226.8 986 62.4
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1226.8 985 62.7
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1224.9 978 62.6
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1222.6 984 62.4
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1220.3 983 62.4
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1219.5 986 63.1
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1216.8 994 63.0
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1215.7 983 61.2
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1214.1 986 61.2
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1213.7 983 61.1
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1211.8 984 61.8
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1208.7 986 61.7
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1207.2 1006 62.8
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1205.3 985 61.4
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1204.9 994 62.8
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1201.4 986 60.6
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1201.0 1072 58.8
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1195.3 986 59.7
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1191.0 986 59.7
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1186.8 955 61.4
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1184.9 900 66.4
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1184.9 986 59.6
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1182.5 992 59.2
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1182.5 986 59.2
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1181.4 1016 59.4
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1181.0 990 59.5
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1179.1 952 61.9
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1171.4 989 60.4
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1162.1 1081 56.0
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1147.1 982 58.9
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1146.0 986 58.9
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1144.8 986 58.9
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1134.4 984 58.0
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1115.5 984 57.0
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1100.5 967 59.4
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1098.6 986 56.9
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1097.0 982 56.2
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1083.9 990 54.4
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1080.9 897 61.1
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 1.3e-311 1073.2 992 54.8
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 4.0e-304 1048.1 847 60.9
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.1e-282 976.9 847 57.3
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 8.2e-281 970.7 881 56.0
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 1.4e-277 959.9 953 52.3
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 1.9e-266 922.9 810 56.9
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 7.2e-253 877.9 994 47.9
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 4.7e-252 875.2 996 46.2
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 1.1e-250 870.5 659 65.6
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.4e-232 809.7 690 57.4
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 6.0e-215 751.9 541 68.8
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 1.6e-212 743.8 952 44.0
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 1.1e-211 741.1 657 57.2
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 6.6e-182 642.1 887 39.3
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 9.3e-168 595.1 530 57.4
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.1e-155 553.5 809 42.3
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 2.8e-148 530.4 883 37.9
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.3e-134 484.2 420 59.5
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 7.4e-133 479.2 362 66.3
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-117 427.6 875 34.3
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 7.0e-107 392.9 257 74.3
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 1.1e-104 385.6 296 68.2
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 7.3e-104 382.9 332 57.8
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 6.1e-103 379.8 296 66.9
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 3.9e-97 360.5 635 39.4
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 1.1e-96 359.0 1006 30.3
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.5e-96 358.6 282 65.6
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 1.9e-88 331.6 1058 26.8
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 2.3e-86 324.7 380 46.1
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 1.6e-71 275.4 319 46.7
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.0e-69 268.5 257 54.5
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 4.4e-69 267.3 359 42.9
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 7.1e-59 233.4 416 34.4
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 2.0e-53 215.3 251 47.0
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 4.2e-51 207.6 129 84.5
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 4.6e-50 204.1 125 86.4
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 4.3e-48 197.6 146 70.5
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 8.2e-47 193.4 184 53.8
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 4.0e-46 191.0 125 83.2
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 1.3e-44 186.0 107 86.9
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 1.3e-44 186.0 107 86.9
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 8.4e-44 183.3 107 86.0
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 4.5e-37 161.0 114 64.9
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 5.7e-32 144.1 109 67.9
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 1.0e-28 133.3 1030 20.5
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 8.5e-28 130.2 106 62.3
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 2.5e-27 128.6 85 75.3
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 8.8e-25 120.2 115 62.6
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 8.8e-25 120.2 115 62.6
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 2.0e-24 119.0 81 64.2
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 5.0e-20 104.4 71 73.2
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 3.0e-17 95.1 72 66.7
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 1.1e-16 93.2 80 56.2
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 8.2e-15 87.0 182 31.3
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 1.1e-14 86.7 60 66.7
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 1.6e-13 82.8 141 39.7
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.6e-13 82.0 69 59.4
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 5.9e-13 80.9 195 34.4
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 7.7e-13 80.5 45 73.3
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.2e-12 79.0 60 61.7
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 5.0e-12 77.8 52 69.2
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 8.8e-09 67.0 52 57.7
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 9.1e-06 57.0 37 75.7


User provided reference genes

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