Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 2.6e-175 618.6 308 100.0
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 3.1e-173 611.7 308 98.4
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 3.5e-172 608.2 308 97.7
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 3.5e-172 608.2 308 97.7
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 1.7e-171 605.9 308 97.4
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 9.4e-162 573.5 308 90.6
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 2.7e-161 572.0 308 90.3
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 1.8e-160 569.3 308 92.5
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 5.7e-159 564.3 308 88.6
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 7.5e-159 563.9 308 90.6
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 9.8e-159 563.5 308 89.9
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 9.8e-159 563.5 308 89.3
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 1.7e-150 536.2 308 86.0
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 2.0e-140 502.7 308 79.5
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 9.9e-127 457.2 306 72.9
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 2.2e-126 456.1 306 71.6
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 2.4e-125 452.6 302 72.8
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 5.4e-125 451.4 306 71.6
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 5.4e-125 451.4 305 71.5
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 7.1e-125 451.1 300 73.7
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 7.1e-125 451.1 300 73.7
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 7.8e-124 447.6 302 72.2
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 1.0e-123 447.2 306 71.6
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 1.0e-123 447.2 306 71.9
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.7e-123 446.4 300 72.7
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 1.7e-123 446.4 298 72.8
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 3.0e-123 445.7 302 71.2
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 5.1e-123 444.9 304 71.1
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 6.6e-123 444.5 306 71.2
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 1.1e-122 443.7 302 70.9
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 1.5e-122 443.4 300 71.7
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 1.5e-122 443.4 302 72.5
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 1.9e-122 443.0 297 71.7
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 3.3e-122 442.2 303 71.0
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 4.3e-122 441.8 302 71.9
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 4.3e-122 441.8 306 71.2
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 7.3e-122 441.0 301 70.8
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 7.3e-122 441.0 298 71.8
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 9.5e-122 440.7 300 71.0
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.6e-121 439.9 302 70.5
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 1.6e-121 439.9 304 69.7
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 1.6e-121 439.9 308 69.2
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 2.1e-121 439.5 303 70.6
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 2.1e-121 439.5 303 70.0
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 2.8e-121 439.1 300 71.7
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.8e-121 439.1 300 71.0
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 3.6e-121 438.7 302 70.5
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 3.6e-121 438.7 304 70.4
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 3.6e-121 438.7 306 70.3
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 4.7e-121 438.3 300 71.3
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 4.7e-121 438.3 300 71.3
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 4.7e-121 438.3 302 70.5
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 4.7e-121 438.3 301 71.1
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 4.7e-121 438.3 300 71.0
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 1.4e-120 436.8 304 69.1
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 1.4e-120 436.8 300 69.3
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 1.8e-120 436.4 307 68.7
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 1.8e-120 436.4 302 70.2
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 2.4e-120 436.0 300 68.7
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 6.8e-120 434.5 300 70.3
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 8.9e-120 434.1 314 69.1
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 1.2e-119 433.7 300 69.7
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 2.0e-119 433.0 306 69.3
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 2.0e-119 433.0 306 69.9
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 3.4e-119 432.2 300 68.7
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 4.4e-119 431.8 300 69.7
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 9.9e-119 430.6 284 72.9
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 9.9e-119 430.6 300 70.3
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.2e-118 429.5 322 66.5
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 2.9e-118 429.1 300 69.7
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 6.4e-118 427.9 316 67.1
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 1.9e-117 426.4 300 69.7
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 2.4e-117 426.0 284 74.3
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 4.1e-117 425.2 300 69.0
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 4.1e-117 425.2 300 68.0
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 5.4e-117 424.9 300 69.3
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 1.6e-116 423.3 313 67.1
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 2.7e-116 422.5 323 65.9
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 4.6e-116 421.8 288 71.9
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 7.8e-116 421.0 300 67.7
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 2.3e-115 419.5 284 71.8
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 1.9e-114 416.4 305 65.9
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 1.9e-114 416.4 300 67.7
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 1.9e-114 416.4 284 71.5
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 5.6e-114 414.8 308 67.2
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 1.2e-113 413.7 299 68.2
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 2.1e-113 412.9 300 65.7
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 3.6e-113 412.1 296 66.9
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 1.1e-112 410.6 289 69.2
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 1.4e-112 410.2 343 60.9
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 1.4e-112 410.2 300 66.7
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 3.1e-112 409.1 300 66.3
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 3.1e-112 409.1 303 65.7
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 2.6e-111 406.0 336 61.9
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 9.9e-111 404.1 286 69.9
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 2.2e-110 402.9 302 63.6
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 4.9e-110 401.7 280 71.1
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 8.4e-110 401.0 300 66.0
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 9.3e-109 397.5 298 65.1
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 3.5e-108 395.6 298 64.8
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 7.8e-108 394.4 354 58.8
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 1.9e-106 389.8 301 60.1
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 2.4e-104 382.9 346 58.4
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 6.7e-99 364.8 303 61.1
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 1.3e-97 360.5 251 70.9
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 1.3e-97 360.5 251 69.7
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 9.9e-95 350.9 293 60.1
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 1.7e-94 350.1 298 56.4
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 2.9e-94 349.4 251 67.7
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 1.4e-93 347.1 299 59.2
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 1.4e-93 347.1 281 63.0
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 9.3e-93 344.4 251 68.1
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 3.1e-88 329.3 259 63.3
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 3.2e-85 319.3 206 73.8
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 3.4e-79 299.3 207 70.0
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 1.4e-77 293.9 331 47.1
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 2.5e-77 293.1 209 69.4
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 1.0e-70 271.2 225 63.1
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 4.7e-68 262.3 216 62.0
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.8e-65 253.1 187 67.4
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 3.5e-63 246.1 307 45.6
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 6.5e-62 241.9 192 63.5
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 5.0e-54 215.7 185 63.8
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 9.4e-53 211.5 319 38.6
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 4.0e-51 206.1 149 68.5
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 3.1e-48 196.4 142 69.0
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 4.2e-45 186.0 171 57.9
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.7e-41 174.1 300 36.0
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 2.0e-34 150.6 100 71.0
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 2.8e-33 146.7 112 65.2
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 2.7e-31 140.2 110 60.0
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 9.2e-24 115.2 176 41.5
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 1.6e-23 114.4 92 64.1
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 7.3e-21 105.5 67 74.6
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 1.5e-18 97.8 80 63.8
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 1.7e-17 94.4 86 57.0
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 8.3e-17 92.0 76 61.8
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 2.1e-12 77.4 57 66.7
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 2.3e-11 73.9 53 71.7
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 6.8e-11 72.4 40 77.5
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 4.6e-07 59.7 41 61.0
SMO340G0270 Selaginella moellendorffii HOM05D002730 ORTHO05D043986 7.8e-07 58.9 256 25.0


User provided reference genes

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