Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 2.4e-157 559.7 514 100.0
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 1.1e-130 471.1 512 93.0
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 1.4e-93 347.8 525 77.7
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 1.5e-87 327.8 523 66.9
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 1.5e-87 327.8 523 66.9
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.2e-76 291.6 568 73.2
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 2.2e-70 270.8 574 72.5
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 7.8e-68 262.3 564 70.9
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 4.6e-60 236.5 541 72.1
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 6.0e-60 236.1 554 69.7
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 5.8e-55 219.5 612 65.2
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 6.0e-52 209.5 600 65.2
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 3.3e-42 177.2 555 65.4
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 3.3e-42 177.2 555 65.4
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 8.1e-41 172.6 559 64.6
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 3.1e-40 170.6 612 61.3
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 4.0e-40 170.2 562 64.2
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 7.6e-39 166.0 615 61.0
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 9.9e-39 165.6 608 62.0
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.3e-38 165.2 613 61.3
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 2.2e-38 164.5 611 61.9
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 2.9e-38 164.1 614 60.4
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 7.1e-37 159.5 600 61.7
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 9.3e-37 159.1 580 63.4
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.1e-36 157.9 575 63.7
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 1.3e-35 155.2 568 63.9
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 1.3e-35 155.2 585 62.7
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 1.3e-35 155.2 585 62.7
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 3.9e-35 153.7 601 61.1
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 1.3e-30 138.7 582 62.2
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 1.7e-30 138.3 612 59.0
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 2.2e-30 137.9 602 60.8
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 4.9e-30 136.7 614 58.6
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 8.4e-30 136.0 598 60.5
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 3.2e-29 134.0 598 60.4
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 4.2e-29 133.7 624 58.0
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 5.4e-29 133.3 619 58.0
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 2.1e-28 131.3 625 57.8
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 1.3e-27 128.6 561 61.7
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.3e-27 128.6 606 57.1
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 1.7e-27 128.3 626 57.3
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 2.3e-27 127.9 632 57.8
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 3.0e-27 127.5 612 58.0
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 3.9e-27 127.1 561 61.7
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 6.6e-27 126.3 628 56.5
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 8.7e-27 125.9 630 57.6
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.3e-26 124.0 571 60.8
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 4.3e-26 123.6 580 60.2
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 5.6e-26 123.2 625 57.1
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 7.4e-26 122.9 616 57.5
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 1.3e-25 122.1 611 57.4
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 1.6e-25 121.7 612 57.2
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 2.1e-25 121.3 598 58.0
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 2.1e-25 121.3 630 57.9
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 2.8e-25 120.9 620 57.3
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 8.1e-25 119.4 628 55.7
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 1.4e-24 118.6 619 57.2
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 1.8e-24 118.2 617 57.5
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 2.4e-24 117.9 610 57.2
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 4.0e-24 117.1 607 57.2
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 5.3e-24 116.7 612 56.4
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 6.9e-24 116.3 625 56.5
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 2.6e-23 114.4 574 59.9
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 4.5e-23 113.6 558 60.8
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 5.8e-23 113.2 584 58.0
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 5.8e-23 113.2 623 56.0
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 5.8e-23 113.2 627 56.8
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 2.2e-22 111.3 596 56.9
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 3.8e-22 110.5 616 56.5
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 4.9e-22 110.2 560 60.5
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 4.9e-22 110.2 586 58.7
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 8.4e-22 109.4 611 57.0
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 8.4e-22 109.4 634 54.7
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 8.4e-22 109.4 598 57.4
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.4e-21 108.6 597 59.0
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.4e-21 108.6 605 57.0
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 1.9e-21 108.2 576 59.4
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.4e-21 107.8 611 57.1
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 3.2e-21 107.5 594 55.7
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 3.2e-21 107.5 611 57.6
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 3.2e-21 107.5 578 59.2
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 4.2e-21 107.1 190 40.0
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.2e-20 105.5 570 58.9
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 1.2e-20 105.5 226 38.5
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 1.6e-20 105.1 617 56.1
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 2.1e-20 104.8 589 58.2
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 2.1e-20 104.8 603 56.2
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 2.1e-20 104.8 606 56.4
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 2.1e-20 104.8 606 56.4
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 2.7e-20 104.4 209 35.9
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 3.5e-20 104.0 132 51.5
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 4.6e-20 103.6 609 57.3
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 6.0e-20 103.2 144 50.0
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.0e-19 102.4 148 50.0
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 1.3e-19 102.1 602 57.5
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.3e-19 102.1 577 58.2
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 1.8e-19 101.7 199 38.7
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 1.8e-19 101.7 199 38.7
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.3e-19 101.3 214 36.0
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 2.3e-19 101.3 180 41.7
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 5.1e-19 100.1 214 36.0
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 6.7e-19 99.8 168 40.5
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 1.5e-18 98.6 603 57.2
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 3.3e-18 97.4 579 57.0
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 4.3e-18 97.1 188 38.3
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 5.6e-18 96.7 232 34.5
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 5.6e-18 96.7 602 55.6
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 7.4e-18 96.3 596 56.5
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 9.6e-18 95.9 616 55.8
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.3e-17 95.5 602 56.0
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 1.6e-17 95.1 578 57.3
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 2.8e-17 94.4 503 62.6
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 3.7e-17 94.0 591 58.4
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 8.1e-17 92.8 583 53.7
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 1.4e-16 92.0 142 47.2
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 1.8e-16 91.7 198 37.4
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 3.1e-16 90.9 228 34.6
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 9.0e-16 89.4 148 42.6
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 2.6e-15 87.8 554 58.7
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 2.6e-15 87.8 554 58.7
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 7.6e-15 86.3 621 54.9
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 1.0e-14 85.9 158 39.9
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 1.0e-14 85.9 190 34.2
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.0e-14 85.9 155 40.0
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 1.0e-14 85.9 219 34.7
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 1.3e-14 85.5 237 32.1
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 1.3e-14 85.5 202 34.2
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 1.7e-14 85.1 188 36.2
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 1.7e-14 85.1 143 45.5
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 1.7e-14 85.1 238 32.8
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 2.2e-14 84.7 217 32.7
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 4.9e-14 83.6 138 44.2
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 6.5e-14 83.2 145 42.8
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 6.5e-14 83.2 216 33.8
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 6.5e-14 83.2 202 34.2
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 6.5e-14 83.2 145 40.7
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 1.4e-13 82.0 193 33.2
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 2.5e-13 81.3 199 34.2
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 2.5e-13 81.3 218 36.2
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 3.2e-13 80.9 139 44.6
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 3.2e-13 80.9 239 31.8
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 4.6e-12 77.0 587 54.2
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 6.0e-12 76.6 160 36.9
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 7.9e-12 76.3 219 32.4
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 7.9e-12 76.3 214 31.8
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 1.3e-11 75.5 172 33.1
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 1.8e-11 75.1 148 43.2
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.5e-10 72.0 210 35.2
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 9.6e-10 69.3 131 35.1
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 9.6e-10 69.3 196 34.2
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 2.8e-09 67.8 156 38.5
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 2.8e-09 67.8 196 33.2
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 2.8e-09 67.8 188 33.5
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 8.2e-09 66.2 155 34.8
Haze_09990 Corylus avellana HOM05D003963 ORTHO05D004558 1.1e-08 65.9 112 34.8
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 2.4e-08 64.7 205 31.7
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 3.1e-08 64.3 205 31.2
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 4.1e-08 63.9 205 33.2
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 4.1e-08 63.9 124 36.3
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 6.9e-08 63.2 100 40.0
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 6.9e-08 63.2 160 34.4
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.5e-07 62.0 109 41.3
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 5.9e-07 60.1 135 36.3
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 7.6e-07 59.7 172 33.1
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.3e-06 58.9 77 41.6
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 1.7e-06 58.5 195 32.8
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 2.9e-06 57.8 156 34.6
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 3.8e-06 57.4 93 39.8
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 5.0e-06 57.0 182 29.7


User provided reference genes

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