Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p42170 Brassica napus HOM05D007360 ORTHO05D008235 1.3e-208 729.6 394 100.0
BraA01t04285Z Brassica rapa HOM05D007360 ORTHO05D008235 2.8e-182 642.1 396 90.9
BolC1t05436H Brassica oleracea HOM05D007360 ORTHO05D008235 3.7e-179 631.7 394 87.3
Sp3g08070 Schrenkiella parvula HOM05D007360 ORTHO05D008235 1.8e-149 533.1 416 76.9
AT3G09730 Arabidopsis thaliana HOM05D007360 ORTHO05D008235 2.6e-140 502.7 416 73.8
AL3G20950 Arabidopsis lyrata HOM05D007360 ORTHO05D008235 3.8e-139 498.8 405 74.3
Thhalv10020860m.g Eutrema salsugineum HOM05D007360 ORTHO05D008235 1.4e-133 480.3 414 72.2
Carub.0003s0882 Capsella rubella HOM05D007360 ORTHO05D008235 2.2e-131 473.0 414 71.5
CARHR084150 Cardamine hirsuta HOM05D007360 ORTHO05D008235 1.3e-123 447.2 419 68.3
Aa31LG3G2160 Aethionema arabicum HOM05D007360 ORTHO05D008235 3.6e-81 306.2 319 59.2
THA.LOC104816327 Tarenaya hassleriana HOM05D007360 ORTHO05D008235 3.8e-75 286.2 421 51.3
Thecc.05G055700 Theobroma cacao HOM05D007360 ORTHO05D008235 7.1e-53 212.2 433 41.8
Duzib128G1437 Durio zibethinus HOM05D007360 ORTHO05D008235 3.6e-49 199.9 418 42.1
COL.COLO4_27062 Corchorus olitorius HOM05D007360 ORTHO05D008235 1.1e-48 198.4 422 39.8
Cpa.g.sc174.13 Carica papaya HOM05D007360 ORTHO05D008235 8.9e-48 195.3 438 40.4
Atru.chr8.1896 Acer truncatum HOM05D007360 ORTHO05D008235 4.4e-47 193.0 420 41.0
QL07p045105 Quercus lobata HOM05D007360 ORTHO05D008235 7.6e-47 192.2 444 41.0
PGR004G0580 Punica granatum HOM05D007360 ORTHO05D008235 1.6e-44 184.5 435 37.7
vmacro20051 Vaccinium macrocarpon HOM05D007360 ORTHO05D008235 6.0e-44 182.6 426 38.7
Duzib093G0075 Durio zibethinus HOM05D007360 ORTHO05D008235 3.9e-43 179.9 384 42.2
Cfa017520 Carpinus fangiana HOM05D007360 ORTHO05D008235 5.1e-43 179.5 451 37.7
Potri.006G130600 Populus trichocarpa HOM05D007360 ORTHO05D008235 5.1e-43 179.5 421 38.7
Haze_20630 Corylus avellana HOM05D007360 ORTHO05D008235 7.3e-42 175.6 431 39.0
CsaV3_3G035660 Cucumis sativus L. HOM05D007360 ORTHO05D008235 2.1e-41 174.1 444 38.1
ClCG10G020460 Citrullus lanatus HOM05D007360 ORTHO05D008235 2.4e-40 170.6 455 38.5
Gohir.D04G115000 Gossypium hirsutum HOM05D007360 ORTHO05D008235 2.4e-40 170.6 416 38.2
Gorai.009G419600 Gossypium raimondii HOM05D007360 ORTHO05D008235 2.4e-40 170.6 416 38.2
Prupe.6G240300 Prunus persica HOM05D007360 ORTHO05D008235 5.3e-40 169.5 433 36.7
CiPaw.09G179100 Carya illinoinensis HOM05D007360 ORTHO05D008235 6.9e-40 169.1 425 38.6
Gohir.A04G075900 Gossypium hirsutum HOM05D007360 ORTHO05D008235 6.9e-40 169.1 417 37.9
TWI74G1131 Tripterygium wilfordii HOM05D007360 ORTHO05D008235 2.6e-39 167.2 428 35.7
Ciclev10011834m.g Citrus clementina HOM05D007360 ORTHO05D008235 2.3e-35 154.1 425 36.9
Manes.08G004115 Manihot esculenta HOM05D007360 ORTHO05D008235 2.3e-35 154.1 409 37.9
Peaxi162Scf00005g04017 Petunia axillaris HOM05D007360 ORTHO05D008235 3.9e-35 153.3 348 38.8
MELO3C009325.2 Cucumis melo HOM05D007360 ORTHO05D008235 6.6e-35 152.5 402 37.6
Dinv35727 Davidia involucrata HOM05D007360 ORTHO05D008235 6.6e-35 152.5 458 34.9
TAR633G0942 Trochodendron aralioides HOM05D007360 ORTHO05D008235 6.6e-35 152.5 394 37.1
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 8.7e-35 152.1 419 35.6
Nitab4.5_0006156g0020 Nicotiana tabacum HOM05D007360 ORTHO05D008235 1.5e-34 151.4 468 33.3
Solyc09g007460.4 Solanum lycopersicum HOM05D007360 ORTHO05D008235 1.5e-34 151.4 297 40.7
CANSAT80G2624 Cannabis sativa HOM05D007360 ORTHO05D008235 1.9e-34 151.0 438 34.7
PGSC0003DMG400001741 Solanum tuberosum HOM05D007360 ORTHO05D008235 1.9e-34 151.0 297 40.1
Sc20g0005120 Simmondsia chinensis HOM05D007360 ORTHO05D008235 2.5e-34 150.6 420 35.5
FvH4_6g15500 Fragaria vesca HOM05D007360 ORTHO05D008235 4.3e-34 149.8 433 36.5
Nitab4.5_0000669g0130 Nicotiana tabacum HOM05D007360 ORTHO05D008235 9.6e-34 148.7 468 31.6
Actinidia19699 Actinidia chinensis HOM05D007360 ORTHO05D008235 1.3e-33 148.3 482 33.0
Sopen09g002350 Solanum pennellii HOM05D007360 ORTHO05D008235 3.6e-33 146.7 365 36.2
ECA233G0563 Erigeron canadensis HOM05D007360 ORTHO05D008235 4.8e-33 146.4 384 38.0
Lsat_1_v5_gn_6_30100 Lactuca sativa HOM05D007360 ORTHO05D008235 1.1e-32 145.2 416 34.1
Sopen00g009140 Solanum pennellii HOM05D007360 ORTHO05D008235 1.2e-31 141.7 259 41.7
Migut.L01667 Erythranthe guttata HOM05D007360 ORTHO05D008235 3.8e-30 136.7 379 36.7
FAN14G4542 Fragaria x ananassa HOM05D007360 ORTHO05D008235 4.9e-30 136.3 461 32.1
Glyma.10G050400 Glycine max HOM05D007360 ORTHO05D008235 6.4e-30 136.0 422 37.0
Hma1.2p1_0111F.1_g053990 Hydrangea macrophylla HOM05D007360 ORTHO05D008235 1.4e-29 134.8 426 33.6
Manes.08G004132 Manihot esculenta HOM05D007360 ORTHO05D008235 4.2e-29 133.3 413 36.3
Manes.12G045236 Manihot esculenta HOM05D007360 ORTHO05D008235 4.2e-29 133.3 388 36.3
Cc06_g03670 Coffea canephora HOM05D007360 ORTHO05D008235 2.7e-28 130.6 461 33.8
Glyma.13G137900 Glycine max HOM05D007360 ORTHO05D008235 3.5e-28 130.2 391 37.1
Lalb_Chr02g0156301 Lupinus albus HOM05D007360 ORTHO05D008235 7.9e-28 129.0 428 34.3
Ah.08g211880 Amaranthus hybridus HOM05D007360 ORTHO05D008235 1.1e-26 125.2 296 38.5
Oeu060091.1 Olea europaea HOM05D007360 ORTHO05D008235 1.5e-26 124.8 400 33.5
Manes.08G004904 Manihot esculenta HOM05D007360 ORTHO05D008235 5.6e-26 122.9 394 35.3
Manes.05G197400 Manihot esculenta HOM05D007360 ORTHO05D008235 7.4e-26 122.5 388 36.6
Manes.08G004103 Manihot esculenta HOM05D007360 ORTHO05D008235 7.4e-26 122.5 415 35.9
Phvul.007G164700 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 1.3e-25 121.7 430 33.3
Sabra06G0102600 Salix brachista HOM05D007360 ORTHO05D008235 1.6e-25 121.3 411 33.1
Manes.08G014114 Manihot esculenta HOM05D007360 ORTHO05D008235 2.8e-25 120.6 394 36.3
FAN09G4144 Fragaria x ananassa HOM05D007360 ORTHO05D008235 1.1e-24 118.6 241 40.7
Manes.08G004112 Manihot esculenta HOM05D007360 ORTHO05D008235 3.1e-24 117.1 401 36.2
Lalb_Chr21g0314721 Lupinus albus HOM05D007360 ORTHO05D008235 5.3e-24 116.3 425 32.0
FAN02G3036 Fragaria x ananassa HOM05D007360 ORTHO05D008235 9.0e-24 115.5 448 33.9
SGA_v2.0_scaffold126G33907 Striga asiatica HOM05D007360 ORTHO05D008235 2.6e-23 114.0 432 32.6
Nn2g13027 Nelumbo nucifera HOM05D007360 ORTHO05D008235 3.4e-23 113.6 397 33.0
FAN05G5130 Fragaria x ananassa HOM05D007360 ORTHO05D008235 5.8e-23 112.8 440 32.0
RcHm_v2.0_Chr3g0469001 Rosa chinensis HOM05D007360 ORTHO05D008235 7.6e-23 112.5 397 33.8
Lj5g0015354 Lotus japonicus HOM05D007360 ORTHO05D008235 8.4e-22 109.0 252 39.7
Lj1g0018826 Lotus japonicus HOM05D007360 ORTHO05D008235 7.1e-21 105.9 220 42.3
Manes.08G004125 Manihot esculenta HOM05D007360 ORTHO05D008235 7.1e-21 105.9 397 34.8
Sed0020725 Sechium edule HOM05D007360 ORTHO05D008235 1.2e-20 105.1 295 37.3
Manes.08G004130 Manihot esculenta HOM05D007360 ORTHO05D008235 7.9e-20 102.4 345 34.8
Manes.08G004118 Manihot esculenta HOM05D007360 ORTHO05D008235 2.3e-19 100.9 423 34.3
Manes.08G004107 Manihot esculenta HOM05D007360 ORTHO05D008235 6.7e-19 99.4 418 33.3
DCAR_020845 Daucus carota HOM05D007360 ORTHO05D008235 1.5e-18 98.2 382 31.2
VMungo0720G0507 Vigna mungo HOM05D007360 ORTHO05D008235 1.9e-18 97.8 247 36.8
Aqoxy4G03227 Aquilegia oxysepala HOM05D007360 ORTHO05D008235 2.0e-15 87.8 286 33.6
Manes.05G196900 Manihot esculenta HOM05D007360 ORTHO05D008235 5.8e-15 86.3 245 37.6
Manes.08G004119 Manihot esculenta HOM05D007360 ORTHO05D008235 1.0e-14 85.5 300 34.3
CSS0042376 Camellia sinensis var. sinensis HOM05D007360 ORTHO05D008235 2.9e-14 84.0 372 32.8
MD04G1105400 Malus domestica HOM05D007360 ORTHO05D008235 1.1e-13 82.0 218 37.6
HanXRQChr02g0051971 Helianthus annuus HOM05D007360 ORTHO05D008235 2.3e-11 74.3 279 33.0
MSTRG.10303 Avicennia marina HOM05D007360 ORTHO05D008235 1.5e-10 71.6 314 29.3
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 2.5e-10 70.9 110 40.9
Phvul.001G175350 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 5.3e-08 63.2 237 31.6
HanXRQChr02g0051981 Helianthus annuus HOM05D007360 ORTHO05D008235 5.9e-07 59.7 117 41.9


User provided reference genes

Program Settings