Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p42040 Brassica napus HOM05D002916 ORTHO05D003152 2.0e-89 332.4 166 100.0
BraA01t04273Z Brassica rapa HOM05D002916 ORTHO05D003152 2.0e-89 332.4 166 100.0
BcaC09g48115 Brassica carinata HOM05D002916 ORTHO05D003152 6.0e-70 267.7 147 91.2
BolC1t05420H Brassica oleracea HOM05D002916 ORTHO05D003152 1.7e-69 266.2 147 91.2
BcaNung05911 Brassica carinata HOM05D002916 ORTHO05D003152 5.8e-65 251.1 148 86.5
Sp3g08400 Schrenkiella parvula HOM05D002916 ORTHO05D003152 1.9e-63 246.1 149 84.6
BcaB04g21229 Brassica carinata HOM05D002916 ORTHO05D003152 2.3e-61 239.2 149 83.2
Thhalv10021626m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 9.6e-60 233.8 156 78.2
A05p38970 Brassica napus HOM05D002916 ORTHO05D003152 1.4e-58 229.9 147 83.0
BraA05t22688Z Brassica rapa HOM05D002916 ORTHO05D003152 2.4e-58 229.2 147 82.3
AL3G21460 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 3.1e-58 228.8 150 78.7
BcaNung06240 Brassica carinata HOM05D002916 ORTHO05D003152 5.2e-58 228.0 147 82.3
C05p58000 Brassica napus HOM05D002916 ORTHO05D003152 6.8e-58 227.6 147 81.6
AT3G10120 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 1.2e-57 226.9 151 77.5
BolC5t34456H Brassica oleracea HOM05D002916 ORTHO05D003152 1.5e-57 226.5 147 81.6
CARHR084600 Cardamine hirsuta HOM05D002916 ORTHO05D003152 1.7e-56 223.0 151 77.5
Carub.0008s0814 Capsella rubella HOM05D002916 ORTHO05D003152 2.2e-48 196.1 155 67.7
Aa31LG3G2650 Aethionema arabicum HOM05D002916 ORTHO05D003152 4.3e-36 155.2 156 59.6
C09p73040 Brassica napus HOM05D002916 ORTHO05D003152 4.8e-35 151.8 154 59.7
BolC3t12736H Brassica oleracea HOM05D002916 ORTHO05D003152 4.8e-35 151.8 179 52.5
BolC9t60038H Brassica oleracea HOM05D002916 ORTHO05D003152 8.1e-35 151.0 154 59.7
A10p32230 Brassica napus HOM05D002916 ORTHO05D003152 6.9e-34 147.9 154 59.1
BraA10t45266Z Brassica rapa HOM05D002916 ORTHO05D003152 6.9e-34 147.9 154 59.1
AL6G13470 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 1.0e-32 144.1 156 56.4
A03p01480 Brassica napus HOM05D002916 ORTHO05D003152 6.5e-32 141.4 158 53.8
BraA03t09526Z Brassica rapa HOM05D002916 ORTHO05D003152 6.5e-32 141.4 158 53.8
C03p01810 Brassica napus HOM05D002916 ORTHO05D003152 1.1e-31 140.6 158 54.4
Thhalv10014801m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 1.4e-31 140.2 158 54.4
AT5G03890 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 2.5e-31 139.4 156 55.1
Carub.0006s0284 Capsella rubella HOM05D002916 ORTHO05D003152 4.2e-31 138.7 153 55.6
THA.LOC104816397 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 6.0e-30 134.8 155 51.6
CARHR209370 Cardamine hirsuta HOM05D002916 ORTHO05D003152 1.9e-28 129.8 159 52.8
BcaC06g32092 Brassica carinata HOM05D002916 ORTHO05D003152 3.3e-28 129.0 151 54.3
Sp6g38840 Schrenkiella parvula HOM05D002916 ORTHO05D003152 4.3e-28 128.6 150 55.3
BcaB01g05762 Brassica carinata HOM05D002916 ORTHO05D003152 1.0e-24 117.5 148 51.4
Cpa.g.sc5.15 Carica papaya HOM05D002916 ORTHO05D003152 1.1e-23 114.0 147 44.2
Duzib093G0112 Durio zibethinus HOM05D002916 ORTHO05D003152 1.9e-23 113.2 145 46.2
COL.COLO4_29727 Corchorus olitorius HOM05D002916 ORTHO05D003152 3.2e-23 112.5 146 46.6
Gorai.002G239800 Gossypium raimondii HOM05D002916 ORTHO05D003152 7.1e-23 111.3 149 46.3
Gohir.A01G206200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.1e-22 109.8 149 45.6
Gohir.A09G139400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.1e-22 109.8 133 46.6
Ciclev10012941m.g Citrus clementina HOM05D002916 ORTHO05D003152 2.7e-22 109.4 146 47.3
Gohir.D01G195600 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.6e-22 108.6 149 45.6
Gohir.A07G134900 Gossypium hirsutum HOM05D002916 ORTHO05D003152 6.1e-22 108.2 133 45.9
Gohir.A11G003500 Gossypium hirsutum HOM05D002916 ORTHO05D003152 6.1e-22 108.2 133 45.9
Thecc.05G089800 Theobroma cacao HOM05D002916 ORTHO05D003152 7.9e-22 107.8 146 43.8
Gohir.D09G135200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.0e-21 107.5 131 46.6
Gorai.006G155100 Gossypium raimondii HOM05D002916 ORTHO05D003152 1.0e-21 107.5 131 46.6
Atru.chr8.1528 Acer truncatum HOM05D002916 ORTHO05D003152 1.3e-21 107.1 146 43.8
Atru.chr8.1530 Acer truncatum HOM05D002916 ORTHO05D003152 1.3e-21 107.1 146 45.2
Gohir.A05G000100 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.0e-21 105.9 133 45.9
THA.LOC104826943 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 6.7e-21 104.8 149 43.0
Rhsim03G0074900 Rhododendron simsii HOM05D002916 ORTHO05D003152 8.7e-21 104.4 146 43.2
Duzib128G0442 Durio zibethinus HOM05D002916 ORTHO05D003152 4.3e-20 102.1 146 43.2
Lalb_Chr01g0018131 Lupinus albus HOM05D002916 ORTHO05D003152 4.3e-20 102.1 145 42.8
Phvul.001G190500 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 4.3e-20 102.1 142 41.5
Glyma.10G072400 Glycine max HOM05D002916 ORTHO05D003152 9.7e-20 100.9 133 42.1
TWI74G0225 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 3.7e-19 99.0 140 42.9
Gohir.D04G099400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.8e-19 98.6 142 42.3
Gorai.009G402300 Gossypium raimondii HOM05D002916 ORTHO05D003152 4.8e-19 98.6 142 42.3
Potri.006G213100 Populus trichocarpa HOM05D002916 ORTHO05D003152 8.2e-19 97.8 149 41.6
Glyma.13G153800 Glycine max HOM05D002916 ORTHO05D003152 1.8e-18 96.7 134 41.0
Ciclev10013433m.g Citrus clementina HOM05D002916 ORTHO05D003152 2.4e-18 96.3 135 44.4
Eucgr.K02033 Eucalyptus grandis HOM05D002916 ORTHO05D003152 2.4e-18 96.3 138 40.6
Manes.08G025700 Manihot esculenta HOM05D002916 ORTHO05D003152 2.4e-18 96.3 149 42.3
Sabra06G0164100 Salix brachista HOM05D002916 ORTHO05D003152 2.4e-18 96.3 134 44.0
Glyma.03G196300 Glycine max HOM05D002916 ORTHO05D003152 3.1e-18 95.9 139 44.6
Glyma.19G194943 Glycine max HOM05D002916 ORTHO05D003152 4.1e-18 95.5 139 43.9
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 5.3e-18 95.1 147 38.8
Gohir.A04G062400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 9.0e-18 94.4 139 40.3
TWI53G0172 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 9.0e-18 94.4 140 41.4
VMungo1383G0514 Vigna mungo HOM05D002916 ORTHO05D003152 9.0e-18 94.4 132 43.2
CANSAT64G0492 Cannabis sativa HOM05D002916 ORTHO05D003152 1.5e-17 93.6 147 44.9
Prupe.7G109500 Prunus persica HOM05D002916 ORTHO05D003152 1.5e-17 93.6 133 42.1
Oeu056929.1 Olea europaea HOM05D002916 ORTHO05D003152 3.4e-17 92.4 133 38.3
Manes.09G055000 Manihot esculenta HOM05D002916 ORTHO05D003152 4.5e-17 92.0 139 41.0
Sed0018474 Sechium edule HOM05D002916 ORTHO05D003152 7.7e-17 91.3 133 44.4
CsaV3_6G040690 Cucumis sativus L. HOM05D002916 ORTHO05D003152 1.0e-16 90.9 137 40.1
Ca_09009_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 1.3e-16 90.5 134 42.5
Oeu047865.1 Olea europaea HOM05D002916 ORTHO05D003152 1.3e-16 90.5 135 39.3
Peaxi162Scf00404g00102 Petunia axillaris HOM05D002916 ORTHO05D003152 1.3e-16 90.5 128 41.4
Cfa001906 Carpinus fangiana HOM05D002916 ORTHO05D003152 1.7e-16 90.1 145 42.1
A05p13670 Brassica napus HOM05D002916 ORTHO05D003152 2.9e-16 89.4 126 50.8
MELO3C024547.2 Cucumis melo HOM05D002916 ORTHO05D003152 5.0e-16 88.6 137 41.6
Potri.016G079700 Populus trichocarpa HOM05D002916 ORTHO05D003152 6.5e-16 88.2 148 40.5
Haze_16636 Corylus avellana HOM05D002916 ORTHO05D003152 1.9e-15 86.7 145 42.1
Lj1g0017693 Lotus japonicus HOM05D002916 ORTHO05D003152 2.5e-15 86.3 140 38.6
PGSC0003DMG400008880 Solanum tuberosum HOM05D002916 ORTHO05D003152 2.5e-15 86.3 157 36.3
Haze_16634 Corylus avellana HOM05D002916 ORTHO05D003152 4.2e-15 85.5 145 41.4
CiPaw.01G252200 Carya illinoinensis HOM05D002916 ORTHO05D003152 1.2e-14 84.0 145 40.0
FAN02G4366 Fragaria x ananassa HOM05D002916 ORTHO05D003152 2.1e-14 83.2 141 39.0
AUR62028520 Chenopodium quinoa HOM05D002916 ORTHO05D003152 2.7e-14 82.8 133 38.3
QL05p034193 Quercus lobata HOM05D002916 ORTHO05D003152 2.7e-14 82.8 139 42.4
Nn2g14164 Nelumbo nucifera HOM05D002916 ORTHO05D003152 4.6e-14 82.0 146 37.0
DCAR_013392 Daucus carota HOM05D002916 ORTHO05D003152 7.9e-14 81.3 137 30.7
FvH4_6g18810 Fragaria vesca HOM05D002916 ORTHO05D003152 7.9e-14 81.3 141 38.3
FAN14G1204 Fragaria x ananassa HOM05D002916 ORTHO05D003152 7.9e-14 81.3 141 38.3
MD12G1036700 Malus domestica HOM05D002916 ORTHO05D003152 1.0e-13 80.9 142 39.4
RcHm_v2.0_Chr3g0473821 Rosa chinensis HOM05D002916 ORTHO05D003152 1.0e-13 80.9 142 40.1
Solyc09g009810.1 Solanum lycopersicum HOM05D002916 ORTHO05D003152 1.8e-13 80.1 159 35.2
AUR62006186 Chenopodium quinoa HOM05D002916 ORTHO05D003152 3.0e-13 79.3 133 36.8
Actinidia05426 Actinidia chinensis HOM05D002916 ORTHO05D003152 3.9e-13 79.0 131 38.9
Aqoxy4G02773 Aquilegia oxysepala HOM05D002916 ORTHO05D003152 3.9e-13 79.0 139 38.1
Cc06_g05820 Coffea canephora HOM05D002916 ORTHO05D003152 5.1e-13 78.6 133 36.1
DCAR_009166 Daucus carota HOM05D002916 ORTHO05D003152 5.1e-13 78.6 142 35.2
FAN05G3486 Fragaria x ananassa HOM05D002916 ORTHO05D003152 5.1e-13 78.6 142 39.4
FAN05G4254 Fragaria x ananassa HOM05D002916 ORTHO05D003152 5.1e-13 78.6 142 39.4
PGR004G1189 Punica granatum HOM05D002916 ORTHO05D003152 5.1e-13 78.6 134 35.1
Migut.J01032 Erythranthe guttata HOM05D002916 ORTHO05D003152 8.8e-13 77.8 152 38.8
Hma1.2p1_0084F.1_g043850 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 1.1e-12 77.4 137 36.5
Hma1.2p1_0820F.1_g223855 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 1.1e-12 77.4 137 36.5
Nn6g34891 Nelumbo nucifera HOM05D002916 ORTHO05D003152 1.1e-12 77.4 146 37.0
Sabra16G0085600 Salix brachista HOM05D002916 ORTHO05D003152 1.1e-12 77.4 134 38.8
DCAR_013390 Daucus carota HOM05D002916 ORTHO05D003152 1.5e-12 77.0 145 30.3
PGR142G0380 Punica granatum HOM05D002916 ORTHO05D003152 2.5e-12 76.3 155 36.1
Sabra16G0087700 Salix brachista HOM05D002916 ORTHO05D003152 3.3e-12 75.9 134 38.8
Migut.L01781 Erythranthe guttata HOM05D002916 ORTHO05D003152 5.7e-12 75.1 150 33.3
Ah.15g090860 Amaranthus hybridus HOM05D002916 ORTHO05D003152 2.2e-11 73.2 148 35.8
DCAR_007755 Daucus carota HOM05D002916 ORTHO05D003152 3.7e-11 72.4 138 32.6
ClCG04G010060 Citrullus lanatus HOM05D002916 ORTHO05D003152 1.1e-10 70.9 131 33.6
DCAR_013391 Daucus carota HOM05D002916 ORTHO05D003152 1.1e-10 70.9 144 27.1
SGA_v2.0_scaffold184G39965 Striga asiatica HOM05D002916 ORTHO05D003152 1.4e-10 70.5 122 37.7
MD14G1023400 Malus domestica HOM05D002916 ORTHO05D003152 5.3e-10 68.6 142 35.2
ATR0078G023 Amborella trichopoda HOM05D002916 ORTHO05D003152 6.9e-10 68.2 139 30.9
DCAR_013389 Daucus carota HOM05D002916 ORTHO05D003152 6.9e-10 68.2 138 30.4
MSTRG.26638 Avicennia marina HOM05D002916 ORTHO05D003152 1.2e-09 67.4 140 30.7
Nitab4.5_0001712g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 2.6e-09 66.2 131 36.6
arahy.Tifrunner.gnm1.ann1.1GMW3T Arachis hypogaea HOM05D002916 ORTHO05D003152 3.4e-09 65.9 145 29.0
arahy.Tifrunner.gnm1.ann1.T8X57X Arachis hypogaea HOM05D002916 ORTHO05D003152 3.4e-09 65.9 145 29.0
SEGI_19412 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 4.5e-09 65.5 157 29.3
Duzib084G1372 Durio zibethinus HOM05D002916 ORTHO05D003152 3.2e-07 59.3 138 27.5
Lsat_1_v5_gn_5_164861 Lactuca sativa HOM05D002916 ORTHO05D003152 3.2e-07 59.3 134 29.9
EL10Ac3g05192 Beta vulgaris HOM05D002916 ORTHO05D003152 4.2e-07 58.9 122 30.3
PSO339G4347 Papaver somniferum HOM05D002916 ORTHO05D003152 4.2e-07 58.9 147 25.2
AUR62035612 Chenopodium quinoa HOM05D002916 ORTHO05D003152 9.4e-07 57.8 122 30.3
Actinidia31270 Actinidia chinensis HOM05D002916 ORTHO05D003152 1.2e-06 57.4 123 32.5
Hma1.2p1_0094F.1_g047290 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 1.2e-06 57.4 122 29.5
Prupe.2G317800 Prunus persica HOM05D002916 ORTHO05D003152 1.2e-06 57.4 150 29.3
SEGI_19965 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 1.6e-06 57.0 154 30.5
Thecc.03G207400 Theobroma cacao HOM05D002916 ORTHO05D003152 1.6e-06 57.0 137 29.9
Glyma.06G135000 Glycine max HOM05D002916 ORTHO05D003152 2.1e-06 56.6 127 29.1
Glyma.04G229700 Glycine max HOM05D002916 ORTHO05D003152 2.7e-06 56.2 127 28.3
Sopen09g004570 Solanum pennellii HOM05D002916 ORTHO05D003152 2.7e-06 56.2 78 42.3
Psat5g073040 Pisum sativum HOM05D002916 ORTHO05D003152 3.6e-06 55.8 82 36.6
EL10Ac3g05193 Beta vulgaris HOM05D002916 ORTHO05D003152 4.7e-06 55.5 161 27.3
Phvul.009G046400 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 4.7e-06 55.5 127 28.3
Gohir.D12G247400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 6.1e-06 55.1 136 28.7
Gohir.A12G246700 Gossypium hirsutum HOM05D002916 ORTHO05D003152 7.9e-06 54.7 136 28.7
Medtr3g092470 Medicago truncatula HOM05D002916 ORTHO05D003152 7.9e-06 54.7 133 31.6
Nitab4.5_0000794g0180 Nicotiana tabacum HOM05D002916 ORTHO05D003152 7.9e-06 54.7 81 33.3
Sed0016396 Sechium edule HOM05D002916 ORTHO05D003152 7.9e-06 54.7 141 27.7
TAR636G0145 Trochodendron aralioides HOM05D002916 ORTHO05D003152 7.9e-06 54.7 157 24.2


User provided reference genes

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