Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p41950 Brassica napus HOM05D004939 ORTHO05D005843 7.6e-61 236.9 112 100.0
A03p59500 Brassica napus HOM05D004939 ORTHO05D005843 1.3e-12 76.6 32 100.0
C01p41420 Brassica napus HOM05D004939 ORTHO05D005843 8.5e-12 73.9 51 66.7
BcaB02g10574 Brassica carinata HOM05D004939 ORTHO05D005843 1.1e-11 73.6 54 61.1
C06p34250 Brassica napus HOM05D004939 ORTHO05D005843 1.1e-11 73.6 71 53.5
BcaC02g11440 Brassica carinata HOM05D004939 ORTHO05D005843 2.5e-11 72.4 54 61.1
A05p11970 Brassica napus HOM05D004939 ORTHO05D005843 2.5e-11 72.4 54 61.1
BraA05t20140Z Brassica rapa HOM05D004939 ORTHO05D005843 2.5e-11 72.4 54 61.1
BcaC09g49204 Brassica carinata HOM05D004939 ORTHO05D005843 4.2e-11 71.6 53 62.3
BolC1t04101H Brassica oleracea HOM05D004939 ORTHO05D005843 4.2e-11 71.6 53 62.3
BolC6t38544H Brassica oleracea HOM05D004939 ORTHO05D005843 5.5e-11 71.2 71 53.5
Carub.0004s1519 Capsella rubella HOM05D004939 ORTHO05D005843 7.2e-11 70.9 54 61.1
CARHR127580 Cardamine hirsuta HOM05D004939 ORTHO05D005843 7.2e-11 70.9 54 61.1
Sp4g15900 Schrenkiella parvula HOM05D004939 ORTHO05D005843 7.2e-11 70.9 54 61.1
BraA02t08500Z Brassica rapa HOM05D004939 ORTHO05D005843 9.4e-11 70.5 33 87.9
BcaC02g07802 Brassica carinata HOM05D004939 ORTHO05D005843 1.2e-10 70.1 54 59.3
C04p15520 Brassica napus HOM05D004939 ORTHO05D005843 2.1e-10 69.3 54 59.3
BolC4t23123H Brassica oleracea HOM05D004939 ORTHO05D005843 2.1e-10 69.3 54 59.3
AL4G29230 Arabidopsis lyrata HOM05D004939 ORTHO05D005843 2.7e-10 68.9 54 59.3
DCAR_023017 Daucus carota HOM05D004939 ORTHO05D005843 3.6e-10 68.6 54 59.3
Potri.005G258300 Populus trichocarpa HOM05D004939 ORTHO05D005843 3.6e-10 68.6 82 46.3
BcaC03g13999 Brassica carinata HOM05D004939 ORTHO05D005843 4.7e-10 68.2 46 67.4
C02p12380 Brassica napus HOM05D004939 ORTHO05D005843 4.7e-10 68.2 46 67.4
Migut.N02996 Erythranthe guttata HOM05D004939 ORTHO05D005843 4.7e-10 68.2 69 50.7
BcaB06g28697 Brassica carinata HOM05D004939 ORTHO05D005843 6.1e-10 67.8 54 57.4
Sabra05G0200000 Salix brachista HOM05D004939 ORTHO05D005843 1.0e-09 67.0 52 61.5
SalBow6G2808 Salvia bowleyana HOM05D004939 ORTHO05D005843 1.0e-09 67.0 54 59.3
Aa31LG9G13490 Aethionema arabicum HOM05D004939 ORTHO05D005843 1.4e-09 66.6 58 55.2
BcaC08g45668 Brassica carinata HOM05D004939 ORTHO05D005843 1.4e-09 66.6 65 47.7
THA.LOC104805020 Tarenaya hassleriana HOM05D004939 ORTHO05D005843 1.8e-09 66.2 54 55.6
Rhsim06G0001700 Rhododendron simsii HOM05D004939 ORTHO05D005843 2.3e-09 65.9 54 55.6
unitig_85.g27224 Utricularia gibba HOM05D004939 ORTHO05D005843 2.3e-09 65.9 54 57.4
Actinidia37902 Actinidia chinensis HOM05D004939 ORTHO05D005843 3.0e-09 65.5 76 44.7
C05p49160 Brassica napus HOM05D004939 ORTHO05D005843 3.0e-09 65.5 46 67.4
TAR625G0897 Trochodendron aralioides HOM05D004939 ORTHO05D005843 3.0e-09 65.5 54 55.6
Gohir.D05G283800 Gossypium hirsutum HOM05D004939 ORTHO05D005843 4.0e-09 65.1 56 57.1
Lj4A813T64 Lonicera japonica HOM05D004939 ORTHO05D005843 4.0e-09 65.1 54 55.6
Psat6g131960 Pisum sativum HOM05D004939 ORTHO05D005843 4.0e-09 65.1 34 76.5
GSVIVG01013446001 Vitis vinifera HOM05D004939 ORTHO05D005843 5.2e-09 64.7 56 57.1
AT2G33560 Arabidopsis thaliana HOM05D004939 ORTHO05D005843 6.8e-09 64.3 54 55.6
Gohir.A05G282600 Gossypium hirsutum HOM05D004939 ORTHO05D005843 6.8e-09 64.3 56 55.4
Gohir.D05G283802 Gossypium hirsutum HOM05D004939 ORTHO05D005843 6.8e-09 64.3 56 55.4
Gorai.009G298300 Gossypium raimondii HOM05D004939 ORTHO05D005843 6.8e-09 64.3 56 55.4
Duzib128G1725 Durio zibethinus HOM05D004939 ORTHO05D005843 8.8e-09 63.9 56 55.4
VMungo1215G1457 Vigna mungo HOM05D004939 ORTHO05D005843 8.8e-09 63.9 34 76.5
Aqoxy6G03042 Aquilegia oxysepala HOM05D004939 ORTHO05D005843 1.2e-08 63.5 54 53.7
Eucgr.F03614 Eucalyptus grandis HOM05D004939 ORTHO05D005843 1.2e-08 63.5 58 53.4
Lsat_1_v5_gn_2_3201 Lactuca sativa HOM05D004939 ORTHO05D005843 1.2e-08 63.5 54 53.7
SGA_v2.0_scaffold227G43179 Striga asiatica HOM05D004939 ORTHO05D005843 1.2e-08 63.5 73 46.6
Dinv23346 Davidia involucrata HOM05D004939 ORTHO05D005843 1.5e-08 63.2 56 55.4
Glyma.07G159700 Glycine max HOM05D004939 ORTHO05D005843 1.5e-08 63.2 34 76.5
PGR031G2869 Punica granatum HOM05D004939 ORTHO05D005843 1.5e-08 63.2 54 51.9
Ca_12499_v3 Cicer arietinum L. HOM05D004939 ORTHO05D005843 2.6e-08 62.4 34 70.6
Potri.002G002900 Populus trichocarpa HOM05D004939 ORTHO05D005843 2.6e-08 62.4 34 76.5
Thecc.10G149200 Theobroma cacao HOM05D004939 ORTHO05D005843 2.6e-08 62.4 56 53.6
Thhalv10016779m.g Eutrema salsugineum HOM05D004939 ORTHO05D005843 3.4e-08 62.0 54 53.7
HanXRQChr14g0427951 Helianthus annuus HOM05D004939 ORTHO05D005843 3.4e-08 62.0 54 48.1
Hma1.2p1_0914F.1_g236160 Hydrangea macrophylla HOM05D004939 ORTHO05D005843 3.4e-08 62.0 54 50.0
Hma1.2p1_0914F.1_g236170 Hydrangea macrophylla HOM05D004939 ORTHO05D005843 3.4e-08 62.0 54 50.0
Lalb_Chr10g0095291 Lupinus albus HOM05D004939 ORTHO05D005843 3.4e-08 62.0 34 73.5
Prupe.5G002900 Prunus persica HOM05D004939 ORTHO05D005843 3.4e-08 62.0 54 50.0
Nn5g31070 Nelumbo nucifera HOM05D004939 ORTHO05D005843 4.4e-08 61.6 77 41.6
TWI56G0687 Tripterygium wilfordii HOM05D004939 ORTHO05D005843 4.4e-08 61.6 34 70.6
Cfa014153 Carpinus fangiana HOM05D004939 ORTHO05D005843 5.7e-08 61.2 34 73.5
Haze_22877 Corylus avellana HOM05D004939 ORTHO05D005843 5.7e-08 61.2 34 73.5
FvH4_5g26460 Fragaria vesca HOM05D004939 ORTHO05D005843 5.7e-08 61.2 56 51.8
FAN13G2929 Fragaria x ananassa HOM05D004939 ORTHO05D005843 5.7e-08 61.2 56 51.8
FAN18G1404 Fragaria x ananassa HOM05D004939 ORTHO05D005843 5.7e-08 61.2 56 51.8
RcHm_v2.0_Chr7g0217371 Rosa chinensis HOM05D004939 ORTHO05D005843 5.7e-08 61.2 56 51.8
Sabra02G0001700 Salix brachista HOM05D004939 ORTHO05D005843 5.7e-08 61.2 34 73.5
Medtr1g035090 Medicago truncatula HOM05D004939 ORTHO05D005843 7.5e-08 60.8 34 70.6
MSTRG.22074 Avicennia marina HOM05D004939 ORTHO05D005843 9.8e-08 60.5 49 55.1
CSS0014437 Camellia sinensis var. sinensis HOM05D004939 ORTHO05D005843 9.8e-08 60.5 56 51.8
CSS0031643 Camellia sinensis var. sinensis HOM05D004939 ORTHO05D005843 9.8e-08 60.5 56 51.8
CiPaw.07G131300 Carya illinoinensis HOM05D004939 ORTHO05D005843 9.8e-08 60.5 34 70.6
Phvul.003G009000 Phaseolus vulgaris HOM05D004939 ORTHO05D005843 9.8e-08 60.5 34 70.6
Lalb_Chr17g0338141 Lupinus albus HOM05D004939 ORTHO05D005843 1.3e-07 60.1 34 67.6
Os02g0193600 Oryza sativa ssp. japonica HOM05D004939 ORTHO05D005843 1.3e-07 60.1 54 51.9
arahy.Tifrunner.gnm1.ann1.6I9FYE Arachis hypogaea HOM05D004939 ORTHO05D005843 1.7e-07 59.7 33 72.7
arahy.Tifrunner.gnm1.ann1.V9NZM2 Arachis hypogaea HOM05D004939 ORTHO05D005843 1.7e-07 59.7 33 72.7
Lj2g0017318 Lotus japonicus HOM05D004939 ORTHO05D005843 1.7e-07 59.7 34 64.7
Cc10_g00160 Coffea canephora HOM05D004939 ORTHO05D005843 2.2e-07 59.3 34 70.6
FAN08G1940 Fragaria x ananassa HOM05D004939 ORTHO05D005843 2.2e-07 59.3 56 51.8
Manes.05G129700 Manihot esculenta HOM05D004939 ORTHO05D005843 2.2e-07 59.3 34 67.6
Sc02g0009340 Simmondsia chinensis HOM05D004939 ORTHO05D005843 2.2e-07 59.3 44 61.4
CANSAT11G2529 Cannabis sativa HOM05D004939 ORTHO05D005843 2.8e-07 58.9 59 47.5
Glyma.20G006600 Glycine max HOM05D004939 ORTHO05D005843 2.8e-07 58.9 34 70.6
QL02p016036 Quercus lobata HOM05D004939 ORTHO05D005843 2.8e-07 58.9 34 70.6
MBI04_g18018_MAGBIO Magnolia biondii HOM05D004939 ORTHO05D005843 3.7e-07 58.5 79 39.2
CAN.G1330.25 Capsicum annuum HOM05D004939 ORTHO05D005843 4.8e-07 58.2 34 70.6
FAN04G1628 Fragaria x ananassa HOM05D004939 ORTHO05D005843 4.8e-07 58.2 56 50.0
TPR.G22378 Trifolium pratense HOM05D004939 ORTHO05D005843 4.8e-07 58.2 34 64.7
Ciclev10001515m.g Citrus clementina HOM05D004939 ORTHO05D005843 6.3e-07 57.8 34 67.6
MD00G1178400 Malus domestica HOM05D004939 ORTHO05D005843 6.3e-07 57.8 34 67.6
PSO017G2996 Papaver somniferum HOM05D004939 ORTHO05D005843 6.3e-07 57.8 71 45.1
PSO170G6093 Papaver somniferum HOM05D004939 ORTHO05D005843 6.3e-07 57.8 71 45.1
Sopen04g036540 Solanum pennellii HOM05D004939 ORTHO05D005843 6.3e-07 57.8 34 67.6
MELO3C017066.2 Cucumis melo HOM05D004939 ORTHO05D005843 8.3e-07 57.4 56 50.0
CsaV3_4G037720 Cucumis sativus L. HOM05D004939 ORTHO05D005843 8.3e-07 57.4 56 50.0
Peaxi162Scf00385g00719 Petunia axillaris HOM05D004939 ORTHO05D005843 1.1e-06 57.0 34 64.7
Solyc04g082900.4 Solanum lycopersicum HOM05D004939 ORTHO05D005843 1.1e-06 57.0 34 64.7
TAR381G1514 Trochodendron aralioides HOM05D000924 ORTHO05D001209 1.1e-06 57.0 76 42.1
ATR0605G152 Amborella trichopoda HOM05D004939 ORTHO05D005843 1.4e-06 56.6 56 50.0
Sed0003879 Sechium edule HOM05D004939 ORTHO05D005843 1.8e-06 56.2 34 64.7
Pp3c24_5040 Physcomitrium patens HOM05D004939 ORTHO05D005843 2.4e-06 55.8 72 34.7
PGSC0003DMG400010009 Solanum tuberosum HOM05D004939 ORTHO05D005843 2.4e-06 55.8 34 64.7
Nitab4.5_0000464g0110 Nicotiana tabacum HOM05D004939 ORTHO05D005843 4.1e-06 55.1 34 64.7
SEGI_14150 Sequoiadendron giganteum HOM05D004939 ORTHO05D005843 4.1e-06 55.1 34 67.6
ClCG11G019130 Citrullus lanatus HOM05D004939 ORTHO05D005843 7.0e-06 54.3 34 64.7


User provided reference genes

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