Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 4.5e-76 287.7 133 100.0
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 5.5e-66 254.2 133 91.0
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 5.5e-66 254.2 133 91.0
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-59 233.0 126 88.9
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 1.3e-59 233.0 126 88.9
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 2.9e-51 205.3 153 69.3
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 3.9e-40 168.3 148 60.1
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 1.7e-38 162.9 147 60.5
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 3.7e-38 161.8 144 59.7
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 1.8e-37 159.5 144 59.0
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 3.1e-37 158.7 144 59.0
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 3.1e-37 158.7 144 59.0
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 7.0e-37 157.5 147 58.5
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 2.6e-36 155.6 148 57.4
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 5.9e-36 154.5 84 86.9
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 5.0e-35 151.4 144 56.2
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 5.0e-35 151.4 147 57.1
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 8.5e-35 150.6 139 59.0
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 1.1e-34 150.2 147 56.5
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 1.1e-34 150.2 139 58.3
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 1.5e-34 149.8 108 70.4
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 1.5e-34 149.8 108 70.4
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 1.5e-34 149.8 108 70.4
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 1.5e-34 149.8 108 70.4
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 1.5e-34 149.8 108 70.4
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 1.2e-33 146.7 144 56.2
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 1.9e-26 122.9 144 46.5
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 1.4e-24 116.7 102 58.8
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 1.2e-23 113.6 98 61.2
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 1.5e-23 113.2 102 58.8
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 2.6e-23 112.5 95 58.9
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 4.4e-23 111.7 102 57.8
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 5.7e-23 111.3 141 46.8
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 5.7e-23 111.3 95 62.1
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 9.8e-23 110.5 102 55.9
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 2.2e-22 109.4 106 51.9
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 2.2e-22 109.4 108 53.7
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.2e-22 109.4 95 61.1
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 3.7e-22 108.6 119 47.1
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 6.3e-22 107.8 105 53.3
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 1.1e-21 107.1 95 58.9
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 1.1e-21 107.1 108 51.9
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.8e-21 106.3 118 49.2
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 2.4e-21 105.9 105 54.3
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 3.1e-21 105.5 105 55.2
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 4.1e-21 105.1 103 55.3
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 5.4e-21 104.8 106 50.9
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 5.4e-21 104.8 102 52.0
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 5.4e-21 104.8 102 52.0
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 5.4e-21 104.8 109 47.7
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 9.1e-21 104.0 101 55.4
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.2e-20 103.6 142 45.1
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.0e-20 102.8 101 54.5
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 2.0e-20 102.8 101 54.5
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 2.0e-20 102.8 105 52.4
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 2.7e-20 102.4 95 56.8
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.7e-20 102.4 118 49.2
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 4.5e-20 101.7 110 48.2
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 5.9e-20 101.3 105 51.4
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 5.9e-20 101.3 99 55.6
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 5.9e-20 101.3 102 52.0
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 7.7e-20 100.9 105 53.3
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.0e-19 100.5 118 49.2
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 1.0e-19 100.5 105 51.4
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 2.3e-19 99.4 148 39.9
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 2.3e-19 99.4 101 52.5
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 2.3e-19 99.4 95 57.9
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 2.3e-19 99.4 105 49.5
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.9e-19 99.0 105 50.5
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.9e-19 99.0 114 46.5
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.9e-19 99.0 114 46.5
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 5.0e-19 98.2 105 49.5
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 6.6e-19 97.8 107 48.6
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 6.6e-19 97.8 105 49.5
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 8.6e-19 97.4 105 46.7
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 8.6e-19 97.4 101 52.5
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 8.6e-19 97.4 109 45.0
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.1e-18 97.1 105 49.5
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 1.5e-18 96.7 95 55.8
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 1.9e-18 96.3 99 51.5
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 1.9e-18 96.3 95 61.1
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.9e-18 96.3 103 53.4
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 3.3e-18 95.5 96 56.2
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 3.3e-18 95.5 102 49.0
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 4.2e-18 95.1 105 51.4
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 5.5e-18 94.7 97 54.6
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 7.2e-18 94.4 95 53.7
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 7.2e-18 94.4 95 56.8
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 9.5e-18 94.0 102 51.0
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 9.5e-18 94.0 102 48.0
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 9.5e-18 94.0 96 56.2
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 9.5e-18 94.0 92 55.4
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 9.5e-18 94.0 103 51.5
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.1e-17 92.8 97 54.6
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 3.6e-17 92.0 104 49.0
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 4.7e-17 91.7 96 52.1
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.7e-17 91.7 92 52.2
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 4.7e-17 91.7 104 47.1
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 6.1e-17 91.3 96 51.0
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 6.1e-17 91.3 108 49.1
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 6.1e-17 91.3 105 50.5
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 6.1e-17 91.3 97 54.6
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 6.1e-17 91.3 97 54.6
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 8.0e-17 90.9 107 48.6
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 1.4e-16 90.1 96 50.0
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 3.0e-16 89.0 108 47.2
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 3.0e-16 89.0 104 47.1
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 3.0e-16 89.0 92 53.3
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 3.0e-16 89.0 92 53.3
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 8.9e-16 87.4 92 51.1
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 1.5e-15 86.7 102 49.0
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 2.0e-15 86.3 66 63.6
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 2.0e-15 86.3 118 42.4
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 2.6e-15 85.9 106 45.3
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.4e-15 85.1 91 51.6
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.4e-15 85.1 92 50.0
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 4.4e-15 85.1 93 52.7
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 1.7e-14 83.2 148 36.5
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.7e-14 83.2 92 48.9
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 2.2e-14 82.8 90 46.7
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 3.7e-14 82.0 62 61.3
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 4.9e-14 81.6 92 48.9
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 6.3e-14 81.3 105 47.6
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 1.1e-13 80.5 96 49.0
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.4e-13 80.1 79 51.9
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 5.4e-13 78.2 96 49.0
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 9.2e-13 77.4 95 43.2
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 2.0e-12 76.3 95 47.4
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 5.9e-12 74.7 95 45.3
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 1.0e-11 73.9 102 45.1
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 1.1e-10 70.5 99 42.4
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.9e-10 69.7 82 47.6
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 4.3e-10 68.6 81 42.0
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 5.6e-10 68.2 141 34.8
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 2.8e-09 65.9 92 44.6
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.5e-07 60.1 95 42.1
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 9.8e-07 57.4 106 40.6
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 2.9e-06 55.8 97 36.1
BolC3t17207H Brassica oleracea HOM05D004054 ORTHO05D004945 8.3e-06 54.3 33 72.7
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 8.3e-06 54.3 149 32.9
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 8.3e-06 54.3 107 32.7


User provided reference genes

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