Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 2.9e-244 848.2 444 100.0
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 2.9e-244 848.2 444 100.0
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 1.2e-242 842.8 444 98.0
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 2.6e-237 825.1 448 96.2
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 7.5e-237 823.5 452 95.4
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 9.6e-216 753.4 447 87.7
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 3.5e-210 734.9 448 84.6
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.3e-207 726.5 448 83.3
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 7.1e-195 684.1 449 78.4
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 3.0e-193 678.7 447 79.2
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 3.1e-190 668.7 452 78.8
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 4.3e-184 648.3 448 77.9
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 2.0e-176 622.9 448 73.0
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 3.2e-163 578.9 449 67.0
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.6e-162 576.6 448 67.0
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 5.2e-161 571.6 448 66.3
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 4.4e-160 568.5 447 65.8
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 7.5e-160 567.8 451 65.2
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 7.5e-160 567.8 451 65.2
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 1.7e-159 566.6 451 65.2
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 1.7e-159 566.6 451 65.2
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 2.2e-159 566.2 451 65.2
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 1.6e-157 560.1 451 65.2
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.2e-154 550.4 446 65.2
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 8.0e-154 547.7 454 63.4
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 2.8e-146 522.7 454 63.2
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 1.5e-144 516.9 393 66.2
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 2.2e-127 459.9 422 59.2
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 5.4e-126 455.3 456 56.4
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 2.1e-125 453.4 453 55.4
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 1.1e-123 447.6 457 54.0
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 2.5e-123 446.4 399 59.6
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 3.3e-123 446.0 401 59.9
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 4.3e-123 445.7 458 56.6
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 2.8e-122 443.0 453 53.9
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 8.1e-122 441.4 453 54.1
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 8.1e-122 441.4 457 55.1
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 1.1e-121 441.0 420 57.1
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 1.4e-121 440.7 407 58.5
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 5.2e-121 438.7 457 54.9
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 8.9e-121 438.0 454 54.4
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 8.9e-121 438.0 401 57.6
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.2e-120 437.6 401 57.6
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 1.2e-120 437.6 462 54.1
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 1.5e-120 437.2 415 57.1
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.0e-120 436.8 453 53.6
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 3.4e-120 436.0 459 54.2
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 5.8e-120 435.3 453 53.6
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 5.8e-120 435.3 460 53.5
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 9.9e-120 434.5 453 54.3
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 1.7e-119 433.7 456 55.3
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 2.2e-119 433.3 436 53.9
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 4.9e-119 432.2 432 55.8
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 6.4e-119 431.8 427 55.0
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 3.2e-118 429.5 413 55.9
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 5.4e-118 428.7 395 57.5
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 1.6e-117 427.2 394 57.1
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 6.0e-117 425.2 389 57.8
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 7.8e-117 424.9 429 54.3
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 3.9e-116 422.5 439 52.4
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 6.6e-116 421.8 399 57.4
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 4.3e-115 419.1 435 53.3
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 7.3e-115 418.3 462 51.7
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 4.7e-114 415.6 407 56.3
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 8.1e-114 414.8 447 52.6
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 1.4e-113 414.1 433 53.1
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 4.9e-111 405.6 393 53.2
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 1.9e-110 403.7 429 50.8
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 1.9e-110 403.7 394 53.3
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 3.2e-110 402.9 387 56.3
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 2.1e-109 400.2 432 52.8
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 2.3e-108 396.7 450 48.9
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 1.9e-107 393.7 450 50.7
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 2.5e-107 393.3 424 51.4
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 1.3e-106 391.0 429 50.3
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 2.4e-105 386.7 392 52.6
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 3.1e-105 386.3 394 52.5
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 4.0e-105 386.0 450 50.0
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 2.9e-103 379.8 425 50.4
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 6.4e-103 378.6 386 52.6
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 1.4e-102 377.5 392 51.0
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.9e-102 377.1 458 48.0
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 9.3e-102 374.8 425 50.1
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 1.6e-101 374.0 453 47.0
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 3.5e-101 372.9 396 53.0
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 3.5e-101 372.9 452 48.5
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 4.6e-101 372.5 447 48.8
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 7.8e-101 371.7 453 48.8
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.3e-100 370.2 453 48.6
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 2.5e-99 366.7 381 53.8
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 1.8e-97 360.5 330 57.6
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 3.1e-97 359.8 387 50.4
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 2.0e-96 357.1 387 49.9
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 3.4e-96 356.3 407 50.9
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 9.9e-96 354.8 344 53.8
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 2.9e-95 353.2 397 50.4
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 1.4e-94 350.9 460 45.9
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 2.3e-92 343.6 431 46.4
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 3.9e-92 342.8 351 53.3
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 2.6e-88 330.1 406 49.0
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 1.0e-84 318.2 349 52.4
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 2.3e-84 317.0 430 45.8
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 3.7e-82 309.7 364 49.5
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 1.1e-81 308.1 294 57.1
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 4.6e-77 292.7 455 43.1
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 4.8e-74 282.7 366 46.2
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 1.1e-70 271.6 341 48.7
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 1.6e-69 267.7 445 38.7
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 5.7e-67 259.2 340 46.8
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 1.0e-63 248.4 254 54.7
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 2.3e-60 237.3 416 38.0
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 1.1e-59 235.0 384 38.8
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 5.7e-59 232.6 166 63.9
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 1.8e-57 227.6 435 40.0
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 5.9e-56 222.6 231 55.4
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 2.5e-54 217.2 302 47.0
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 4.0e-52 209.9 392 36.7
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 1.5e-51 208.0 223 48.4
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 2.2e-50 204.1 407 35.4
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.2e-48 198.4 392 36.0
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 4.4e-43 179.9 400 34.5
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.5e-19 101.7 226 31.4
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 1.3e-18 98.6 336 28.3
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 6.0e-16 89.7 164 32.9
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 3.9e-15 87.0 69 58.0
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 3.6e-13 80.5 213 29.1
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 8.1e-13 79.3 119 45.4
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 7.5e-11 72.8 146 30.1
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 7.8e-08 62.8 67 49.3


User provided reference genes

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