Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p40240 Brassica napus HOM05D003079 ORTHO05D003461 1.2e-214 749.6 400 100.0
BraA01t04061Z Brassica rapa HOM05D003079 ORTHO05D003461 4.7e-214 747.7 400 99.8
BcaC09g48303 Brassica carinata HOM05D003079 ORTHO05D003461 6.3e-158 561.2 424 77.1
C01p51720 Brassica napus HOM05D003079 ORTHO05D003461 1.8e-157 559.7 424 77.1
BolC1t05117H Brassica oleracea HOM05D003079 ORTHO05D003461 1.5e-156 556.6 424 76.7
BcaB04g21010 Brassica carinata HOM05D003079 ORTHO05D003461 9.4e-146 520.8 421 73.6
Sp3g11560 Schrenkiella parvula HOM05D003079 ORTHO05D003461 3.5e-140 502.3 463 66.7
BcaC01g03997 Brassica carinata HOM05D003079 ORTHO05D003461 1.8e-125 453.4 415 67.2
BolC3t16901H Brassica oleracea HOM05D003079 ORTHO05D003461 2.4e-125 453.0 411 67.6
C03p46320 Brassica napus HOM05D003079 ORTHO05D003461 5.4e-125 451.8 417 66.9
BcaB04g18754 Brassica carinata HOM05D003079 ORTHO05D003461 3.9e-123 445.7 413 65.9
A03p38160 Brassica napus HOM05D003079 ORTHO05D003461 3.6e-121 439.1 414 65.5
BraA03t12969Z Brassica rapa HOM05D003079 ORTHO05D003461 3.6e-121 439.1 414 65.5
AL3G25210 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 4.0e-120 435.6 459 60.3
Thhalv10020643m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 5.2e-120 435.3 451 62.5
CARHR087980 Cardamine hirsuta HOM05D003079 ORTHO05D003461 1.2e-113 414.1 433 63.3
AT3G13360 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 4.1e-109 399.1 459 56.9
Carub.0003s1274 Capsella rubella HOM05D003079 ORTHO05D003461 1.1e-104 384.4 458 56.6
Aa31LG8G580 Aethionema arabicum HOM05D003079 ORTHO05D003461 6.2e-97 358.6 422 55.5
THA.LOC104815679 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 4.6e-68 262.7 466 45.3
THA.LOC104810573 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.1e-50 204.9 429 41.0
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 1.2e-34 151.8 494 31.8
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 4.5e-31 139.8 484 30.6
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 4.5e-31 139.8 443 32.1
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 2.1e-28 131.0 424 31.1
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 2.7e-28 130.6 561 29.2
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 1.8e-27 127.9 424 31.1
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 4.0e-27 126.7 541 28.3
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 4.0e-27 126.7 516 30.2
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 1.2e-26 125.2 562 30.4
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 2.6e-26 124.0 541 28.1
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 3.4e-26 123.6 526 28.5
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 3.4e-26 123.6 568 30.5
AT4G26455 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 5.7e-26 122.9 460 29.8
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 7.5e-26 122.5 556 29.1
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.3e-25 121.7 541 28.5
BcaNung02417 Brassica carinata HOM05D003079 ORTHO05D003461 2.2e-25 120.9 447 30.2
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 6.3e-25 119.4 561 27.3
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 1.1e-24 118.6 552 27.4
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 1.8e-24 117.9 559 29.7
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 3.1e-24 117.1 569 29.2
A01p17700 Brassica napus HOM05D003079 ORTHO05D003461 2.0e-23 114.4 447 30.2
AL7G26490 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 2.7e-23 114.0 465 29.9
C01p22370 Brassica napus HOM05D003079 ORTHO05D003461 3.5e-23 113.6 420 29.8
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 4.5e-23 113.2 535 27.3
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 7.7e-23 112.5 436 30.0
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 1.3e-22 111.7 447 30.0
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 1.3e-22 111.7 537 27.6
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 1.3e-22 111.7 556 25.7
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 3.8e-22 110.2 534 27.9
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 6.5e-22 109.4 425 30.1
Atru.chr2.3897 Acer truncatum HOM05D003079 ORTHO05D003461 1.1e-21 108.6 562 27.0
Sp7g24370 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.1e-21 108.6 440 29.3
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 1.9e-21 107.8 489 28.4
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.9e-21 107.8 561 26.4
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 3.2e-21 107.1 548 27.9
AL8G31840 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 4.2e-21 106.7 408 30.4
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 3.6e-20 103.6 478 27.6
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 1.0e-19 102.1 525 28.2
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 1.4e-19 101.7 453 29.1
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.8e-19 101.3 449 30.3
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 2.3e-19 100.9 538 27.7
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 3.0e-19 100.5 449 30.3
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 5.2e-19 99.8 557 27.8
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 8.8e-19 99.0 557 28.0
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 1.5e-18 98.2 555 27.9
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 1.5e-18 98.2 450 30.0
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 2.0e-18 97.8 547 27.1
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.0e-18 97.8 578 28.0
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 4.4e-18 96.7 551 26.7
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 4.4e-18 96.7 551 26.7
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 4.4e-18 96.7 551 26.7
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 5.7e-18 96.3 561 27.6
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 1.3e-17 95.1 540 27.4
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 1.7e-17 94.7 561 26.9
Lalb_Chr15g0079931 Lupinus albus HOM05D003079 ORTHO05D003461 2.2e-17 94.4 528 26.7
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.8e-17 94.0 540 27.2
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 4.9e-17 93.2 530 25.8
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 4.9e-17 93.2 551 26.7
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 6.3e-17 92.8 452 28.5
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.8e-16 91.3 550 27.3
C03p63130 Brassica napus HOM05D003079 ORTHO05D003461 5.4e-16 89.7 66 72.7
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 5.4e-16 89.7 561 25.3
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 7.0e-16 89.4 554 25.8
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 9.2e-16 89.0 418 28.2
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 1.2e-15 88.6 510 26.9
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 1.2e-15 88.6 577 26.3
SGA_v2.0_scaffold92G28159 Striga asiatica HOM05D003079 ORTHO05D003461 1.2e-15 88.6 489 26.4
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 2.0e-15 87.8 510 26.9
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 5.9e-15 86.3 544 26.7
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 5.9e-15 86.3 566 26.9
Migut.H01709 Erythranthe guttata HOM05D003079 ORTHO05D003461 7.8e-15 85.9 488 26.8
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 7.8e-15 85.9 561 25.1
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 1.0e-14 85.5 561 24.8
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 1.3e-14 85.1 503 27.4
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 1.3e-14 85.1 563 25.4
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.7e-14 84.7 531 25.4
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 3.8e-14 83.6 527 26.0
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 6.6e-14 82.8 563 26.6
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 8.6e-14 82.4 543 27.3
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 1.1e-13 82.0 501 26.5
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 1.5e-13 81.6 538 26.4
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 1.9e-13 81.3 528 25.4
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 3.3e-13 80.5 542 27.3
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 3.3e-13 80.5 539 25.6
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 7.3e-13 79.3 534 26.2
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 7.3e-13 79.3 569 25.7
SalBow8G1693 Salvia bowleyana HOM05D003079 ORTHO05D003461 9.5e-13 79.0 365 27.4
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 9.5e-13 79.0 399 27.1
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 1.2e-12 78.6 564 26.2
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 2.8e-12 77.4 408 28.2
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.8e-12 77.4 524 26.5
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 2.8e-12 77.4 550 24.5
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 6.1e-12 76.3 355 26.8
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 6.1e-12 76.3 554 24.0
Dinv40917 Davidia involucrata HOM05D003079 ORTHO05D003461 1.0e-11 75.5 470 27.2
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 1.0e-11 75.5 446 27.4
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.0e-11 75.5 578 25.1
TAR626G0479 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.4e-11 75.1 324 27.8
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 1.8e-11 74.7 568 26.2
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 1.8e-11 74.7 566 26.0
BcaC01g05490 Brassica carinata HOM05D041398 ORTHO05D032673 2.3e-11 74.3 63 63.5
C03p25880 Brassica napus HOM05D041398 ORTHO05D032673 2.3e-11 74.3 63 63.5
BolC3t14974H Brassica oleracea HOM05D041398 ORTHO05D032673 2.3e-11 74.3 63 63.5
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 3.0e-11 73.9 549 24.4
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 5.2e-11 73.2 428 25.5
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 5.2e-11 73.2 546 24.4
VMungo1080G0483 Vigna mungo HOM05D003079 ORTHO05D003461 8.9e-11 72.4 546 26.2
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 2.0e-10 71.2 422 27.0
Dinv19642 Davidia involucrata HOM05D003079 ORTHO05D003461 7.5e-10 69.3 425 28.5
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 9.8e-10 68.9 538 25.7
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 9.8e-10 68.9 267 29.2
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 9.8e-10 68.9 517 26.5
Rhsim06G0235200 Rhododendron simsii HOM05D003079 ORTHO05D003461 3.7e-09 67.0 395 27.1
BcaC04g20138 Brassica carinata HOM05D003079 ORTHO05D003461 6.4e-09 66.2 158 33.5
BolC9t57600H Brassica oleracea HOM05D003079 ORTHO05D003461 6.4e-09 66.2 158 33.5
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 6.4e-09 66.2 566 24.2
Aqoxy4G02267 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 1.4e-08 65.1 499 25.1
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 1.4e-08 65.1 474 23.8
C09p47450 Brassica napus HOM05D003079 ORTHO05D003461 7.0e-08 62.8 159 33.3
CDE02G1968 Ceratophyllum demersum HOM05D000308 ORTHO05D003461 1.2e-07 62.0 392 25.8
A10p13440 Brassica napus HOM05D003079 ORTHO05D003461 1.6e-07 61.6 188 30.9
BraA10t43447Z Brassica rapa HOM05D003079 ORTHO05D003461 1.6e-07 61.6 188 30.9
HanXRQChr11g0335521 Helianthus annuus HOM05D003079 ORTHO05D003461 3.5e-07 60.5 456 24.1
SGA_v2.0_scaffold186G40233 Striga asiatica HOM05D003079 ORTHO05D003461 4.6e-07 60.1 428 26.2
BcaB08g35981 Brassica carinata HOM05D003079 ORTHO05D003461 5.9e-07 59.7 164 31.1
COL.COLO4_07791 Corchorus olitorius HOM05D003079 ORTHO05D003461 7.8e-07 59.3 251 28.3
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 1.3e-06 58.5 519 23.1
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 1.3e-06 58.5 284 25.7
Lsat_1_v5_gn_7_115521 Lactuca sativa HOM05D003079 ORTHO05D003461 1.7e-06 58.2 408 26.2
Nitab4.5_0002216g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.3e-06 57.8 384 26.6
CARHR269610 Cardamine hirsuta HOM05D003079 ORTHO05D003461 3.0e-06 57.4 158 29.7
Nitab4.5_0003570g0050 Nicotiana tabacum HOM05D003079 ORTHO05D003461 6.6e-06 56.2 389 25.4
Rhsim04G0008000 Rhododendron simsii HOM05D003079 ORTHO05D003461 6.6e-06 56.2 376 27.7


User provided reference genes

Program Settings