Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 9.1e-176 620.2 319 100.0
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.4e-168 596.3 319 96.2
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.4e-168 596.3 319 96.2
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.4e-168 596.3 319 96.2
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 1.6e-167 592.8 319 96.2
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 2.8e-156 555.4 322 89.8
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 3.0e-155 552.0 319 90.6
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 3.0e-155 552.0 319 90.6
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 5.2e-155 551.2 319 88.4
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 2.6e-154 548.9 317 90.2
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-153 546.6 319 89.3
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.3e-153 546.6 319 89.3
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.3e-153 546.6 319 89.3
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 1.2e-151 540.0 320 88.8
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 1.2e-151 540.0 320 88.8
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 2.0e-151 539.3 323 86.4
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 3.5e-151 538.5 320 88.8
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 4.5e-151 538.1 320 88.4
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 1.7e-150 536.2 320 88.1
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 3.9e-150 535.0 320 87.5
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.5e-149 532.3 321 86.3
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.2e-145 519.2 322 84.5
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 3.0e-142 508.8 322 82.9
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 3.6e-140 501.9 322 80.4
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.6e-140 501.9 319 81.5
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 4.7e-140 501.5 322 79.5
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 4.4e-138 495.0 320 79.1
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 3.7e-137 491.9 323 78.9
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 6.8e-131 471.1 319 78.1
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 7.3e-125 451.1 313 73.5
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 5.8e-122 441.4 313 73.2
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 3.2e-88 329.3 316 56.0
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 3.5e-87 325.9 316 54.1
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 4.6e-87 325.5 319 55.2
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 6.1e-87 325.1 322 53.7
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.3e-86 323.2 316 54.4
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 5.1e-86 322.0 322 53.4
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.1e-86 322.0 316 56.3
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.1e-85 320.9 321 53.3
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.5e-85 320.5 323 53.3
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 4.3e-85 318.9 317 54.3
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 5.7e-85 318.5 317 54.9
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.7e-85 317.8 326 53.4
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 6.3e-84 315.1 319 52.4
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 8.2e-84 314.7 323 53.9
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 1.3e-81 307.4 306 55.6
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 5.0e-81 305.4 214 75.2
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 1.1e-80 304.3 318 53.1
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 2.5e-80 303.1 315 54.9
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 4.2e-80 302.4 324 50.6
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 5.5e-80 302.0 316 52.2
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.0e-78 297.7 306 52.6
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.4e-78 297.4 316 51.9
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 3.9e-78 295.8 330 49.4
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 8.8e-78 294.7 323 49.2
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.1e-77 294.3 326 50.6
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 5.7e-77 292.0 301 50.5
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 7.4e-77 291.6 324 49.7
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 2.8e-76 289.7 314 50.0
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 4.8e-76 288.9 280 53.2
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 2.4e-75 286.6 328 49.1
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 4.1e-75 285.8 321 49.2
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 5.3e-75 285.4 317 49.2
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 5.3e-75 285.4 324 48.8
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 9.1e-75 284.6 291 52.6
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 9.1e-75 284.6 323 48.9
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 2.0e-74 283.5 319 49.8
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 4.5e-74 282.3 316 48.1
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 5.9e-74 282.0 321 48.9
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 5.9e-74 282.0 362 48.1
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 1.7e-73 280.4 321 47.7
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 2.9e-73 279.6 316 49.4
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 3.8e-73 279.3 321 50.2
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 6.5e-73 278.5 319 48.9
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 1.9e-72 276.9 334 50.6
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 3.2e-72 276.2 273 53.8
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 3.2e-72 276.2 318 47.5
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 3.2e-72 276.2 323 48.6
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 4.2e-72 275.8 317 48.3
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 5.5e-72 275.4 315 48.9
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 7.2e-72 275.0 316 46.5
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 9.4e-72 274.6 321 48.9
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.6e-71 273.9 319 48.0
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.7e-71 273.1 317 48.3
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 3.6e-71 272.7 314 46.5
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 3.6e-71 272.7 321 48.6
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 3.6e-71 272.7 315 48.6
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 6.1e-71 271.9 322 47.2
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 6.1e-71 271.9 318 47.2
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 7.9e-71 271.6 314 46.2
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 7.9e-71 271.6 317 47.3
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.4e-70 270.8 317 47.9
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.4e-70 270.8 290 50.7
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 2.3e-70 270.0 290 50.3
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.1e-69 267.7 320 45.9
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.5e-69 267.3 317 46.4
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 3.3e-69 266.2 319 47.0
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 9.7e-69 264.6 317 47.9
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 2.2e-68 263.5 299 48.5
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 6.3e-68 261.9 319 45.5
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 6.3e-68 261.9 327 45.9
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 8.2e-68 261.5 317 46.7
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.1e-67 261.2 317 44.5
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 1.4e-67 260.8 302 48.0
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 3.1e-67 259.6 291 48.8
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 3.1e-67 259.6 299 46.5
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 3.1e-67 259.6 318 47.8
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 4.1e-67 259.2 415 39.5
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 9.1e-67 258.1 316 45.3
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 1.6e-66 257.3 317 45.7
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 2.0e-66 256.9 315 43.8
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 2.2e-65 253.4 299 49.2
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 3.8e-65 252.7 317 45.1
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 5.0e-65 252.3 296 46.6
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 8.5e-65 251.5 314 45.9
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 9.4e-64 248.1 293 48.5
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 4.7e-63 245.7 299 48.8
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 1.4e-62 244.2 318 43.4
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 8.8e-62 241.5 315 44.4
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 1.5e-61 240.7 315 42.5
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 2.6e-61 240.0 389 41.9
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 3.3e-61 239.6 319 42.6
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 5.7e-61 238.8 258 51.2
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 6.3e-60 235.3 258 50.8
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 5.3e-59 232.3 259 47.5
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 9.1e-59 231.5 331 43.5
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 2.0e-58 230.3 323 42.1
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.7e-57 227.3 285 44.9
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 1.7e-57 227.3 324 41.7
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.2e-57 226.9 261 49.0
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 2.9e-57 226.5 317 43.5
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 6.5e-57 225.3 327 42.5
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 4.7e-55 219.2 315 41.3
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 3.0e-54 216.5 317 40.7
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 9.8e-53 211.5 302 44.0
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 5.4e-51 205.7 129 84.5
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.6e-50 204.1 129 83.7
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 1.1e-48 198.0 327 39.1
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 1.7e-44 184.1 225 44.9
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 3.6e-39 166.4 247 38.1
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 2.0e-34 150.6 333 31.2
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.0e-33 148.3 167 47.9
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 5.0e-33 146.0 109 71.6
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 8.6e-33 145.2 301 33.6
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 4.7e-31 139.4 161 48.4
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 6.8e-30 135.6 160 46.2
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 7.5e-29 132.1 321 30.5
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 1.4e-27 127.9 314 33.1
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 4.0e-22 109.8 193 36.8
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 6.4e-20 102.4 119 48.7
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 9.5e-16 88.6 95 48.4
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-15 88.2 86 54.7
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-15 88.2 86 54.7
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.8e-14 82.4 96 49.0
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 1.9e-11 74.3 81 48.1
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 6.0e-10 69.3 98 40.8
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 1.0e-09 68.6 130 34.6
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 2.3e-09 67.4 68 48.5
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 2.3e-09 67.4 68 48.5
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 1.2e-07 61.6 68 44.1
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 8.1e-07 58.9 96 31.2
Cre09.g392616 Chlamydomonas reinhardtii HOM05D004300 ORTHO05D005171 2.4e-06 57.4 321 24.0


User provided reference genes

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