Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 2.5e-36 154.8 73 100.0
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 3.6e-35 151.0 73 94.5
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 3.6e-35 151.0 73 94.5
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 1.0e-34 149.4 73 94.5
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 4.1e-31 137.5 76 86.8
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 9.4e-28 126.3 75 81.3
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 1.2e-27 125.9 76 81.6
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 1.0e-26 122.9 75 81.3
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.2e-25 119.4 73 76.7
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 1.2e-25 119.4 75 74.7
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 3.4e-25 117.9 76 76.3
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 9.8e-25 116.3 73 75.3
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.8e-23 112.1 58 84.5
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 9.1e-23 109.8 58 84.5
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 1.2e-22 109.4 58 82.8
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 1.6e-22 109.0 58 84.5
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 2.0e-22 108.6 65 76.9
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 3.5e-22 107.8 54 87.0
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 3.5e-22 107.8 54 87.0
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 4.5e-22 107.5 73 68.5
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 5.9e-22 107.1 57 82.5
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 5.9e-22 107.1 58 81.0
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 5.9e-22 107.1 57 82.5
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.3e-21 105.9 68 72.1
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 1.3e-21 105.9 58 82.8
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.7e-21 105.5 55 83.6
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 2.3e-21 105.1 53 83.0
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 2.3e-21 105.1 53 83.0
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 2.3e-21 105.1 53 84.9
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 2.3e-21 105.1 54 85.2
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 2.3e-21 105.1 50 90.0
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.9e-21 104.8 58 79.3
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.9e-21 104.8 58 79.3
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 2.9e-21 104.8 58 79.3
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 3.8e-21 104.4 76 69.7
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 3.8e-21 104.4 56 82.1
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 3.8e-21 104.4 56 82.1
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 3.8e-21 104.4 73 68.5
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.8e-21 104.4 58 79.3
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 3.8e-21 104.4 58 79.3
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 3.8e-21 104.4 53 83.0
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 3.8e-21 104.4 49 89.8
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 3.8e-21 104.4 54 83.3
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 5.0e-21 104.0 54 83.3
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 5.0e-21 104.0 54 83.3
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 5.0e-21 104.0 50 90.0
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 5.0e-21 104.0 72 70.8
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 5.0e-21 104.0 77 66.2
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 5.0e-21 104.0 73 65.8
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 6.6e-21 103.6 54 83.3
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 6.6e-21 103.6 73 68.5
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 6.6e-21 103.6 73 68.5
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 6.6e-21 103.6 73 68.5
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 6.6e-21 103.6 63 74.6
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 6.6e-21 103.6 76 64.5
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 6.6e-21 103.6 50 90.0
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 6.6e-21 103.6 73 65.8
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 8.6e-21 103.2 73 68.5
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 8.6e-21 103.2 56 78.6
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 8.6e-21 103.2 57 78.9
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 8.6e-21 103.2 67 73.1
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 8.6e-21 103.2 60 75.0
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 1.1e-20 102.8 54 81.5
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 1.1e-20 102.8 60 76.7
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.1e-20 102.8 71 70.4
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.1e-20 102.8 65 73.8
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 1.1e-20 102.8 65 73.8
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.1e-20 102.8 65 73.8
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 1.1e-20 102.8 73 67.1
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.5e-20 102.4 73 67.1
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 1.5e-20 102.4 60 76.7
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 1.5e-20 102.4 72 68.1
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 1.9e-20 102.1 58 79.3
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 1.9e-20 102.1 54 81.5
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 1.9e-20 102.1 55 80.0
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 1.9e-20 102.1 50 88.0
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 2.5e-20 101.7 69 71.0
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 2.5e-20 101.7 47 89.4
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 2.5e-20 101.7 48 85.4
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 2.5e-20 101.7 51 86.3
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 2.5e-20 101.7 49 87.8
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 2.5e-20 101.7 58 75.9
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.5e-20 101.7 73 67.1
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 2.5e-20 101.7 61 72.1
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 2.5e-20 101.7 70 68.6
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 3.3e-20 101.3 73 67.1
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 3.3e-20 101.3 73 67.1
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 3.3e-20 101.3 48 91.7
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 3.3e-20 101.3 48 91.7
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 3.3e-20 101.3 71 69.0
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 3.3e-20 101.3 71 69.0
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 3.3e-20 101.3 75 65.3
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 3.3e-20 101.3 71 67.6
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 4.2e-20 100.9 72 69.4
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 4.2e-20 100.9 72 69.4
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 5.5e-20 100.5 53 84.9
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 5.5e-20 100.5 73 65.8
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 5.5e-20 100.5 70 65.7
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 7.2e-20 100.1 64 73.4
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 7.2e-20 100.1 60 76.7
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 7.2e-20 100.1 60 76.7
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 9.5e-20 99.8 53 77.4
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 9.5e-20 99.8 72 63.9
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 9.5e-20 99.8 72 63.9
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 9.5e-20 99.8 61 73.8
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 1.2e-19 99.4 74 66.2
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 1.2e-19 99.4 50 82.0
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 1.2e-19 99.4 54 79.6
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 1.2e-19 99.4 54 79.6
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.2e-19 99.4 58 77.6
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 1.2e-19 99.4 71 67.6
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 1.6e-19 99.0 50 86.0
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.6e-19 99.0 61 73.8
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.6e-19 99.0 62 74.2
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 2.1e-19 98.6 69 69.6
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 2.1e-19 98.6 50 84.0
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 2.1e-19 98.6 48 87.5
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 2.1e-19 98.6 46 91.3
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 2.8e-19 98.2 73 64.4
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 2.8e-19 98.2 58 79.3
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 3.6e-19 97.8 72 66.7
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 3.6e-19 97.8 73 64.4
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 4.7e-19 97.4 72 63.9
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 4.7e-19 97.4 63 68.3
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 4.7e-19 97.4 58 74.1
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 8.0e-19 96.7 59 69.5
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.0e-18 96.3 56 75.0
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.0e-18 96.3 58 74.1
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 1.8e-18 95.5 51 78.4
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 2.3e-18 95.1 60 71.7
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 2.3e-18 95.1 46 87.0
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 2.3e-18 95.1 46 87.0
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 3.0e-18 94.7 57 66.7
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 3.0e-18 94.7 57 66.7
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 3.0e-18 94.7 54 74.1
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 5.2e-18 94.0 53 79.2
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.2e-17 92.8 56 75.0
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 3.4e-17 91.3 43 90.7
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 4.4e-17 90.9 55 70.9
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 4.4e-17 90.9 65 66.2
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.3e-16 89.4 49 81.6
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 1.7e-16 89.0 52 71.2
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 2.2e-16 88.6 72 59.7
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 6.3e-16 87.0 47 74.5
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.1e-15 86.3 46 78.3
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.1e-15 86.3 46 78.3
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.8e-15 85.5 39 92.3
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 5.4e-15 84.0 42 81.0
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 1.2e-14 82.8 69 62.3
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 4.6e-14 80.9 70 57.1
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 6.1e-11 70.5 56 62.5
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 1.0e-10 69.7 47 70.2
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 2.0e-09 65.5 54 59.3
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 1.2e-06 56.2 25 92.0


User provided reference genes

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