Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 0.0e+00 1226.8 681 100.0
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 0.0e+00 1210.3 687 98.1
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 0.0e+00 1194.5 681 97.7
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 0.0e+00 1154.4 687 94.8
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 0.0e+00 1152.1 687 92.4
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 1.4e-311 1072.4 717 80.2
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 2.1e-307 1058.5 700 84.4
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 8.1e-307 1056.6 707 81.9
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 9.9e-305 1049.7 696 81.5
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 2.4e-303 1045.0 686 86.3
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 9.3e-303 1043.1 697 81.2
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 9.3e-303 1043.1 703 86.2
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 2.3e-301 1038.5 696 87.1
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 5.3e-298 1027.3 730 79.0
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 9.0e-298 1026.5 732 78.3
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 4.9e-296 1020.8 706 81.4
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 4.2e-295 1017.7 711 80.7
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 2.1e-291 1005.4 694 77.8
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 3.9e-285 984.6 692 74.9
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 6.8e-245 850.9 720 66.7
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 8.9e-221 770.8 742 58.4
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 4.4e-212 741.9 721 57.3
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 7.1e-210 734.6 758 55.7
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 4.6e-209 731.9 758 55.7
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 1.9e-207 726.5 753 55.2
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.6e-206 723.4 725 57.4
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 1.6e-206 723.4 737 55.5
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 5.2e-205 718.4 745 55.2
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 2.2e-203 713.0 741 54.7
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 2.2e-203 713.0 734 54.6
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 4.9e-203 711.8 737 54.5
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 8.4e-203 711.1 722 55.5
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 7.1e-202 708.0 729 56.0
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.7e-201 706.1 737 53.7
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.0e-200 704.1 706 56.4
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.0e-200 702.6 739 53.7
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.1e-200 701.8 737 53.9
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 5.1e-200 701.8 754 52.9
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.0e-196 689.9 757 52.8
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.6e-196 689.5 708 54.5
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 5.8e-196 688.3 793 51.7
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 7.6e-196 688.0 726 54.3
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.2e-195 686.4 762 52.4
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 2.4e-194 682.9 706 56.7
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 3.2e-194 682.6 795 50.4
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 1.2e-193 680.6 748 52.8
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 3.5e-193 679.1 706 56.2
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 3.0e-192 676.0 720 54.2
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 6.6e-192 674.9 750 52.5
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 3.3e-191 672.5 734 52.0
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 3.6e-190 669.1 732 52.6
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 4.8e-190 668.7 714 53.9
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 6.2e-190 668.3 721 54.1
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 8.1e-190 667.9 752 52.4
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 8.1e-190 667.9 710 53.0
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 1.2e-188 664.1 731 51.6
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 1.2e-188 664.1 740 52.7
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 8.4e-187 657.9 752 53.3
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 1.2e-185 654.1 789 50.7
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 4.6e-185 652.1 837 49.5
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 1.3e-184 650.6 815 49.1
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 3.0e-184 649.4 820 48.3
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 6.7e-184 648.3 820 48.2
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 8.7e-184 647.9 840 47.6
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 7.4e-183 644.8 737 50.7
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 1.3e-182 644.0 768 48.7
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 6.2e-182 641.7 840 47.3
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 6.2e-182 641.7 726 53.6
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 1.1e-181 641.0 637 56.2
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 1.8e-181 640.2 804 48.5
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 3.1e-181 639.4 816 48.3
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 1.2e-180 637.5 749 49.8
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 5.8e-180 635.2 763 49.3
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 1.9e-178 630.2 728 50.5
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 3.2e-178 629.4 698 51.6
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 4.2e-178 629.0 794 48.4
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 9.3e-178 627.9 730 51.0
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.2e-177 627.5 769 49.3
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 7.9e-177 624.8 709 50.8
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.3e-176 624.0 777 47.9
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 1.8e-176 623.6 757 49.1
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 1.1e-175 620.9 760 49.3
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.5e-175 620.5 753 49.1
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 3.3e-175 619.4 700 53.4
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 9.6e-175 617.8 817 47.1
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 2.8e-174 616.3 687 52.5
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 3.7e-174 615.9 702 51.9
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 8.2e-174 614.8 818 46.7
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.4e-173 613.2 751 48.3
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 9.0e-173 611.3 745 49.3
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 1.2e-172 610.9 794 48.4
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 5.9e-172 608.6 722 50.8
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 2.1e-169 600.1 633 53.1
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 4.6e-169 599.0 735 50.9
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 3.0e-168 596.3 822 46.5
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 5.7e-167 592.0 587 54.2
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 3.1e-165 586.3 675 50.1
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 5.3e-165 585.5 696 50.6
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 5.3e-165 585.5 758 47.0
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 2.6e-164 583.2 743 48.5
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 3.4e-164 582.8 692 51.4
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 1.1e-162 577.8 639 52.1
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 2.1e-161 573.5 814 45.3
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 2.0e-156 557.0 742 46.8
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 5.9e-156 555.4 807 43.7
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 6.5e-155 552.0 705 47.7
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.3e-152 543.5 431 64.5
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.6e-151 540.0 848 41.9
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 5.3e-149 532.3 695 46.0
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 1.0e-144 518.1 616 48.5
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 1.7e-139 500.7 705 45.1
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 3.8e-139 499.6 435 59.1
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 2.3e-136 490.3 818 39.5
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 1.5e-135 487.6 841 38.8
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 9.8e-135 485.0 620 46.6
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 7.2e-130 468.8 838 38.1
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.2e-127 461.5 712 40.9
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 1.7e-123 447.6 734 40.7
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 7.3e-122 442.2 474 51.7
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 4.4e-111 406.4 736 37.9
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 4.0e-104 383.3 740 37.2
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 2.5e-98 364.0 550 41.3
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 2.2e-86 324.3 542 38.2
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.4e-85 319.7 481 39.7
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.5e-84 317.0 480 41.0
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.0e-84 316.2 482 39.6
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.0e-83 315.5 561 38.7
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 8.7e-83 312.4 304 54.9
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.1e-77 292.7 479 38.6
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.1e-77 292.7 479 38.6
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.7e-76 290.8 465 38.5
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.0e-75 287.3 518 36.7
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.4e-74 282.7 483 37.7
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.4e-69 268.5 491 36.5
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 2.4e-56 224.6 571 35.7
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 9.0e-56 222.6 521 36.7
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 3.8e-54 217.2 387 41.3
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 8.7e-51 206.1 189 49.2
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 2.4e-48 198.0 92 98.9
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.4e-35 155.6 197 48.2
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 1.4e-16 92.4 71 60.6
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.2e-15 89.4 385 30.6
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 1.6e-12 79.0 79 45.6
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.7e-12 77.4 52 57.7
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 4.0e-11 74.3 53 64.2
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.7e-09 67.8 77 41.6
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 6.3e-09 67.0 73 43.8
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 6.3e-09 67.0 73 43.8
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 6.3e-09 67.0 68 44.1
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 1.8e-08 65.5 49 61.2
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 5.9e-07 60.5 283 26.5
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 2.3e-06 58.5 115 33.0
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 3.8e-06 57.8 73 43.8


User provided reference genes

Program Settings