Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p38340 Brassica napus HOM05D002758 ORTHO05D002885 1.2e-58 229.9 144 100.0
BraA01t03885Z Brassica rapa HOM05D002758 ORTHO05D002885 3.8e-57 224.9 142 99.3
C01p48670 Brassica napus HOM05D002758 ORTHO05D002885 4.4e-53 211.5 144 76.4
BcaC09g48555 Brassica carinata HOM05D002758 ORTHO05D002885 2.2e-52 209.1 144 75.7
BolC1t04821H Brassica oleracea HOM05D002758 ORTHO05D002885 2.2e-52 209.1 144 75.7
Sp3g14090 Schrenkiella parvula HOM05D002758 ORTHO05D002885 1.3e-44 183.3 142 77.5
BcaB04g20905 Brassica carinata HOM05D002758 ORTHO05D002885 9.2e-43 177.2 142 68.3
BcaB06g25687 Brassica carinata HOM05D002758 ORTHO05D002885 7.8e-42 174.1 142 78.9
BcaC05g28933 Brassica carinata HOM05D002758 ORTHO05D002885 6.6e-41 171.0 142 69.0
A05p33610 Brassica napus HOM05D002758 ORTHO05D002885 6.6e-41 171.0 142 69.0
C05p50610 Brassica napus HOM05D002758 ORTHO05D002885 6.6e-41 171.0 142 69.0
Aa31LG8G2960 Aethionema arabicum HOM05D002758 ORTHO05D002885 8.6e-41 170.6 142 73.2
BolC5t33807H Brassica oleracea HOM05D002758 ORTHO05D002885 8.6e-41 170.6 142 69.0
BraA05t22185Z Brassica rapa HOM05D002758 ORTHO05D002885 2.5e-40 169.1 142 68.3
AL3G28420 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 7.3e-40 167.5 140 68.6
Thhalv10021746m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 7.3e-40 167.5 142 69.0
Carub.0003s1550 Capsella rubella HOM05D002758 ORTHO05D002885 3.1e-38 162.2 140 67.9
CARHR090850 Cardamine hirsuta HOM05D002758 ORTHO05D002885 2.6e-37 159.1 140 64.3
AT3G15760 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 1.1e-35 153.7 140 64.3
Sp1g39120 Schrenkiella parvula HOM05D002758 ORTHO05D002885 2.8e-31 139.0 142 66.9
AL1G60820 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 8.1e-31 137.5 142 64.8
Thhalv10011857m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 1.4e-30 136.7 142 65.5
C06p14110 Brassica napus HOM05D002758 ORTHO05D002885 1.8e-30 136.3 142 64.8
BolC6t36589H Brassica oleracea HOM05D002758 ORTHO05D002885 1.8e-30 136.3 142 64.8
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 2.4e-30 136.0 142 59.2
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 6.8e-30 134.4 142 58.5
Carub.0001s4153 Capsella rubella HOM05D002758 ORTHO05D002885 1.2e-29 133.7 142 64.1
BcaC08g43430 Brassica carinata HOM05D002758 ORTHO05D002885 4.4e-29 131.7 141 56.7
BraA05t20788Z Brassica rapa HOM05D002758 ORTHO05D002885 9.9e-29 130.6 140 63.6
BolC6t35882H Brassica oleracea HOM05D002758 ORTHO05D002885 2.2e-28 129.4 143 55.2
CARHR042690 Cardamine hirsuta HOM05D002758 ORTHO05D002885 2.2e-28 129.4 142 60.6
AT1G52565 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 2.9e-28 129.0 142 65.5
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 2.9e-28 129.0 143 55.2
A06p01750 Brassica napus HOM05D002758 ORTHO05D002885 1.4e-27 126.7 143 61.5
THA.LOC104815531 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 1.9e-27 126.3 142 61.3
BraA06t23394Z Brassica rapa HOM05D002758 ORTHO05D002885 1.2e-26 123.6 143 60.8
BcaB02g10984 Brassica carinata HOM05D002758 ORTHO05D002885 1.3e-25 120.2 142 64.1
Aa31LG10G2440 Aethionema arabicum HOM05D002758 ORTHO05D002885 5.6e-24 114.8 156 48.7
C06p07990 Brassica napus HOM05D002758 ORTHO05D002885 2.1e-23 112.8 144 48.6
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 1.9e-16 89.7 148 43.2
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 2.8e-15 85.9 136 43.4
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 4.8e-15 85.1 138 43.5
Manes.11G055700 Manihot esculenta HOM05D002758 ORTHO05D002885 6.2e-15 84.7 141 44.0
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 8.1e-15 84.3 138 44.2
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 1.4e-14 83.6 139 43.9
Cpa.g.sc10.256 Carica papaya HOM05D002758 ORTHO05D002885 1.8e-14 83.2 142 50.0
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 2.4e-14 82.8 134 42.5
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 1.2e-13 80.5 142 40.1
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 1.2e-13 80.5 135 39.3
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.6e-13 79.3 138 42.8
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.6e-13 79.3 138 42.8
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 1.3e-12 77.0 135 39.3
Sed0015979 Sechium edule HOM05D002758 ORTHO05D002885 2.9e-12 75.9 135 47.4
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 8.4e-12 74.3 138 42.0
CANSAT56G1388 Cannabis sativa HOM05D002758 ORTHO05D002885 1.4e-11 73.6 145 39.3
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 1.4e-11 73.6 135 37.0
ClCG07G012650 Citrullus lanatus HOM05D002758 ORTHO05D002885 1.9e-11 73.2 135 48.1
Sed0016112 Sechium edule HOM05D002758 ORTHO05D002885 3.2e-11 72.4 129 49.6
MELO3C017886.2 Cucumis melo HOM05D002758 ORTHO05D002885 5.4e-11 71.6 135 56.3
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 9.3e-11 70.9 139 39.6
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 9.3e-11 70.9 139 39.6
CiPaw.02G156300 Carya illinoinensis HOM05D002758 ORTHO05D002885 2.1e-10 69.7 140 39.3
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 2.1e-10 69.7 138 36.2
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.7e-10 69.3 139 38.8
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 2.7e-10 69.3 145 40.0
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 4.6e-10 68.6 131 37.4
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 6.0e-10 68.2 141 36.9
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 7.9e-10 67.8 138 39.1
CsaV3_4G001540 Cucumis sativus L. HOM05D002758 ORTHO05D002885 1.0e-09 67.4 135 52.6
PGR031G0668 Punica granatum HOM05D002758 ORTHO05D002885 1.8e-09 66.6 143 36.4
QL09p026717 Quercus lobata HOM05D002758 ORTHO05D002885 2.3e-09 66.2 138 44.9
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 5.1e-09 65.1 142 38.7
Cfa001976 Carpinus fangiana HOM05D002758 ORTHO05D002885 5.1e-09 65.1 142 38.7
arahy.Tifrunner.gnm1.ann1.3WRP69 Arachis hypogaea HOM05D002758 ORTHO05D002885 3.3e-08 62.4 140 47.9
arahy.Tifrunner.gnm1.ann1.A8WRUN Arachis hypogaea HOM05D002758 ORTHO05D002885 3.3e-08 62.4 140 47.9
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 4.3e-08 62.0 142 33.8
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.3e-07 60.5 135 36.3
TAR383G0328 Trochodendron aralioides HOM05D002758 ORTHO05D002885 1.6e-07 60.1 72 48.6
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 2.1e-07 59.7 142 37.3
Actinidia21981 Actinidia chinensis HOM05D002758 ORTHO05D002885 2.8e-07 59.3 71 42.3
Hund09249 Selenicereus undatus HOM05D002758 ORTHO05D002885 3.7e-07 58.9 73 49.3
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 4.8e-07 58.5 140 36.4
SGA_v2.0_scaffold5G02683 Striga asiatica HOM05D002758 ORTHO05D002885 6.2e-07 58.2 72 48.6
Hma1.2p1_1962F.1_g309250 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 8.1e-07 57.8 140 34.3
Nitab4.5_0005728g0010 Nicotiana tabacum HOM05D002758 ORTHO05D002885 8.1e-07 57.8 146 34.9
Manes.06G058000 Manihot esculenta HOM05D002758 ORTHO05D002885 1.1e-06 57.4 150 36.7
MSTRG.10674 Avicennia marina HOM05D002758 ORTHO05D002885 1.4e-06 57.0 69 46.4
Lj3g0013801 Lotus japonicus HOM05D002758 ORTHO05D002885 1.4e-06 57.0 134 44.8
Lsat_1_v5_gn_8_58521 Lactuca sativa HOM05D002758 ORTHO05D002885 2.4e-06 56.2 141 41.8
Nitab4.5_0000373g0020 Nicotiana tabacum HOM05D002758 ORTHO05D002885 2.4e-06 56.2 72 47.2
VMungo1080G1568 Vigna mungo HOM05D002758 ORTHO05D002885 2.4e-06 56.2 72 45.8
ECA234G1831 Erigeron canadensis HOM05D002758 ORTHO05D002885 3.1e-06 55.8 74 40.5
Aqoxy7G03691 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 4.0e-06 55.5 150 36.7
PSO210G4958 Papaver somniferum HOM05D002758 ORTHO05D002885 4.0e-06 55.5 149 32.9
Lj4g0007884 Lotus japonicus HOM05D002758 ORTHO05D002885 5.3e-06 55.1 123 39.0
Ciclev10009903m.g Citrus clementina HOM05D002758 ORTHO05D002885 6.9e-06 54.7 73 45.2
Sed0027515 Sechium edule HOM05D002758 ORTHO05D002885 6.9e-06 54.7 67 47.8
MSTRG.11135 Avicennia marina HOM05D002758 ORTHO05D002885 9.0e-06 54.3 73 43.8
Glyma.08G211800 Glycine max HOM05D002758 ORTHO05D002885 9.0e-06 54.3 133 33.1
Lsat_1_v5_gn_7_45161 Lactuca sativa HOM05D002758 ORTHO05D002885 9.0e-06 54.3 127 35.4


User provided reference genes

Program Settings