Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 1.6e-74 282.7 146 100.0
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 1.0e-73 280.0 146 99.3
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 2.1e-71 272.3 146 95.9
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 2.1e-71 272.3 146 95.9
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 2.1e-71 272.3 146 95.9
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 2.1e-71 272.3 146 95.9
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 2.1e-71 272.3 146 96.6
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 4.7e-71 271.2 146 95.2
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 1.8e-70 269.2 146 95.2
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 1.8e-70 269.2 146 95.2
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 2.0e-69 265.8 146 93.8
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 1.7e-68 262.7 146 91.1
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 2.2e-68 262.3 146 91.8
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.1e-67 260.0 146 90.4
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 1.9e-67 259.2 146 90.4
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 1.9e-67 259.2 146 91.1
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 2.4e-67 258.8 146 90.4
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 2.4e-67 258.8 146 90.4
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 2.4e-67 258.8 146 90.4
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 3.2e-67 258.5 146 90.4
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 3.2e-67 258.5 146 90.4
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 5.4e-67 257.7 146 90.4
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 5.4e-67 257.7 146 90.4
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 5.4e-67 257.7 146 89.7
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 7.1e-67 257.3 146 89.7
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 7.1e-67 257.3 146 89.0
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 1.6e-66 256.1 146 89.7
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 1.6e-66 256.1 146 89.7
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 2.7e-66 255.4 146 89.0
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 4.6e-66 254.6 146 89.7
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.0e-65 253.4 146 89.0
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 9.6e-64 246.9 144 88.2
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 1.1e-62 243.4 147 85.7
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 5.3e-62 241.1 146 82.9
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 1.5e-61 239.6 146 84.2
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 2.6e-61 238.8 146 82.2
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 2.6e-61 238.8 146 83.6
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 1.7e-60 236.1 146 82.2
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 2.2e-60 235.7 146 82.2
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 2.2e-60 235.7 146 81.5
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 2.9e-60 235.3 146 82.2
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 8.4e-60 233.8 146 81.5
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 1.4e-59 233.0 146 80.8
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 1.9e-59 232.6 146 81.5
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 1.9e-59 232.6 146 79.5
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 2.4e-59 232.3 146 78.8
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 4.2e-59 231.5 146 81.5
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 4.2e-59 231.5 146 81.5
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 4.2e-59 231.5 146 78.8
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 4.2e-59 231.5 146 78.1
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 7.1e-59 230.7 146 78.8
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 9.3e-59 230.3 146 80.8
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 9.3e-59 230.3 146 80.1
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 1.2e-58 229.9 146 79.5
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 1.2e-58 229.9 146 80.1
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.6e-58 229.6 146 78.1
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 2.7e-58 228.8 147 80.3
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 3.5e-58 228.4 145 79.3
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 78.1
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 79.5
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 4.6e-58 228.0 146 78.1
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 4.6e-58 228.0 146 77.4
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 4.6e-58 228.0 146 76.7
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 4.6e-58 228.0 146 80.1
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 7.9e-58 227.3 146 78.8
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 7.9e-58 227.3 146 80.8
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.0e-57 226.9 146 77.4
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 1.3e-57 226.5 146 79.5
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 1.3e-57 226.5 146 79.5
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 1.8e-57 226.1 146 80.1
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 3.0e-57 225.3 146 78.8
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 3.0e-57 225.3 147 79.6
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 3.9e-57 224.9 146 79.5
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 3.9e-57 224.9 146 78.8
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 78.1
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 78.1
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 78.1
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 6.7e-57 224.2 146 76.7
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 6.7e-57 224.2 146 76.0
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 6.7e-57 224.2 146 76.0
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 8.7e-57 223.8 146 76.0
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 1.1e-56 223.4 146 77.4
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 1.1e-56 223.4 150 78.7
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 1.1e-56 223.4 147 76.9
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 1.5e-56 223.0 146 77.4
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 1.5e-56 223.0 146 77.4
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 1.5e-56 223.0 146 77.4
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 1.9e-56 222.6 146 75.3
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.9e-56 222.6 146 75.3
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 2.5e-56 222.2 147 78.2
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 2.5e-56 222.2 147 78.2
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 3.3e-56 221.9 146 78.1
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 3.3e-56 221.9 146 78.1
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 3.3e-56 221.9 146 76.7
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 4.3e-56 221.5 146 78.1
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 4.3e-56 221.5 146 77.4
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 4.3e-56 221.5 146 76.7
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 4.3e-56 221.5 146 76.7
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 4.3e-56 221.5 145 77.2
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 5.6e-56 221.1 147 78.9
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 5.6e-56 221.1 146 74.7
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 7.4e-56 220.7 146 78.1
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 1.6e-55 219.5 146 76.7
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.6e-55 219.5 146 77.4
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 2.1e-55 219.2 146 75.3
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.1e-55 219.2 146 75.3
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 2.8e-55 218.8 146 76.0
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 2.8e-55 218.8 146 77.4
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 3.7e-55 218.4 146 74.7
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 3.7e-55 218.4 139 80.6
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 3.7e-55 218.4 146 75.3
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 4.8e-55 218.0 146 77.4
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 4.8e-55 218.0 146 74.0
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 6.2e-55 217.6 146 75.3
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 6.2e-55 217.6 146 75.3
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 6.2e-55 217.6 148 75.7
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 8.1e-55 217.2 146 76.0
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 8.1e-55 217.2 146 76.0
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 8.1e-55 217.2 146 76.7
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 1.1e-54 216.9 147 76.9
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.1e-54 216.9 147 76.9
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.8e-54 216.1 146 74.0
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 2.4e-54 215.7 147 74.8
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 3.1e-54 215.3 147 74.1
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 4.0e-54 214.9 146 75.3
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 4.0e-54 214.9 146 74.0
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 4.0e-54 214.9 143 74.8
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 4.0e-54 214.9 146 75.3
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 4.0e-54 214.9 146 75.3
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 1.2e-53 213.4 146 75.3
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 1.5e-53 213.0 146 73.3
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 7.6e-53 210.7 146 74.0
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 2.9e-52 208.8 147 74.8
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 3.8e-52 208.4 147 71.4
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 6.4e-52 207.6 138 76.8
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 6.4e-52 207.6 146 73.3
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 1.1e-51 206.8 137 75.9
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 1.4e-51 206.5 147 74.8
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 1.9e-51 206.1 147 73.5
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 3.2e-51 205.3 147 74.8
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 4.2e-51 204.9 146 67.8
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 1.6e-50 203.0 117 87.2
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 1.6e-50 203.0 102 97.1
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 4.6e-50 201.4 146 71.2
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 6.0e-50 201.1 146 72.6
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 7.9e-50 200.7 146 67.1
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 1.8e-49 199.5 146 71.2
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 8.7e-49 197.2 146 71.2
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 1.5e-48 196.4 144 70.1
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 4.3e-48 194.9 146 71.2
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 7.4e-48 194.1 129 73.6
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 3.7e-47 191.8 146 69.9
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 2.4e-46 189.1 147 71.4
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 4.5e-45 184.9 103 84.5
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 3.8e-44 181.8 143 66.4
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 6.5e-44 181.0 146 74.7
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 1.9e-43 179.5 146 74.7
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 1.3e-41 173.3 137 72.3
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 1.0e-36 157.1 138 58.0
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 1.7e-36 156.4 139 56.1
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 7.9e-34 147.5 99 77.8
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 1.8e-33 146.4 144 54.9
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 6.3e-31 137.9 146 52.7
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 3.1e-30 135.6 86 80.2
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 1.3e-28 130.2 86 77.9
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 1.0e-25 120.6 80 72.5
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 5.1e-25 118.2 86 68.6
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 8.2e-23 110.9 146 49.3
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 8.5e-20 100.9 60 78.3
MCO07G351 Micromonas commoda HOM05D003870 ORTHO05D004567 1.0e-17 94.0 126 41.3
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 5.2e-17 91.7 65 70.8
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 2.2e-15 86.3 65 70.8
Zm00001eb343540 Zea mays HOM05D003870 ORTHO05D004567 3.8e-12 75.5 118 44.1
Cre07.g330250 Chlamydomonas reinhardtii HOM05D003870 ORTHO05D004567 5.0e-12 75.1 106 40.6
MD02G1178900 Malus domestica HOM05D003870 ORTHO05D004567 3.6e-10 68.9 33 93.9
unitig_747.g21485 Utricularia gibba HOM05D003870 ORTHO05D004567 6.7e-09 64.7 137 33.6
TAR629G2234 Trochodendron aralioides HOM05D002207 ORTHO05D002250 3.1e-06 55.8 43 67.4


User provided reference genes

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