Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 8.0e-42 173.3 87 100.0
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 2.5e-19 98.6 57 84.2
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 1.3e-15 86.3 99 54.5
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 1.4e-14 82.8 83 51.8
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.4e-14 82.8 83 50.6
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.4e-14 82.8 83 50.6
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 2.4e-14 82.0 54 70.4
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 2.4e-14 82.0 83 50.6
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 2.4e-14 82.0 83 50.6
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 2.4e-14 82.0 83 50.6
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 2.4e-14 82.0 83 50.6
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 4.2e-14 81.3 55 72.7
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 4.2e-14 81.3 55 72.7
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 4.2e-14 81.3 55 72.7
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 5.4e-14 80.9 54 70.4
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 5.4e-14 80.9 55 72.7
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 5.4e-14 80.9 55 72.7
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 7.1e-14 80.5 54 68.5
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.6e-13 79.3 54 68.5
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 4.6e-13 77.8 54 68.5
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 1.0e-12 76.6 54 63.0
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.5e-11 72.8 64 53.1
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 1.9e-11 72.4 49 71.4
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 5.6e-11 70.9 54 63.0
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 5.6e-11 70.9 54 63.0
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 5.6e-11 70.9 54 63.0
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 5.6e-11 70.9 54 63.0
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 5.6e-11 70.9 54 63.0
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 5.6e-11 70.9 77 45.5
C05p54450 Brassica napus HOM05D021248 ORTHO05D018618 7.3e-11 70.5 51 68.6
C01p45260 Brassica napus HOM05D021248 ORTHO05D018618 1.6e-10 69.3 51 68.6
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 6.2e-10 67.4 77 45.5
BolC5t34111H Brassica oleracea HOM05D004053 ORTHO05D018618 6.2e-10 67.4 46 69.6
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 8.1e-10 67.0 54 59.3
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.1e-09 66.6 50 58.0
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 1.8e-09 65.9 50 58.0
A04p06740 Brassica napus HOM05D004053 ORTHO05D033555 2.4e-09 65.5 41 73.2
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 2.4e-09 65.5 55 54.5
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 2.4e-09 65.5 64 46.9
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 4.0e-09 64.7 50 56.0
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 4.0e-09 64.7 60 48.3
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 4.0e-09 64.7 60 48.3
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 5.3e-09 64.3 54 53.7
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 6.9e-09 63.9 55 54.5
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 6.9e-09 63.9 60 48.3
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 6.9e-09 63.9 59 50.8
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 9.0e-09 63.5 64 45.3
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 1.5e-08 62.8 50 54.0
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.0e-08 62.4 54 55.6
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.0e-08 62.4 54 51.9
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 2.0e-08 62.4 60 48.3
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 2.0e-08 62.4 50 56.0
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 2.6e-08 62.0 50 56.0
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 2.6e-08 62.0 54 53.7
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 3.4e-08 61.6 50 56.0
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 3.4e-08 61.6 78 42.3
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 5.8e-08 60.8 54 46.3
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 5.8e-08 60.8 50 54.0
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 5.8e-08 60.8 54 50.0
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 5.8e-08 60.8 55 47.3
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 7.6e-08 60.5 54 50.0
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 7.6e-08 60.5 50 52.0
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 9.9e-08 60.1 59 47.5
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 1.3e-07 59.7 54 53.7
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.3e-07 59.7 50 52.0
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 1.3e-07 59.7 54 48.1
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 1.3e-07 59.7 54 48.1
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 1.3e-07 59.7 50 50.0
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 1.3e-07 59.7 54 48.1
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 1.3e-07 59.7 50 54.0
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 1.7e-07 59.3 50 54.0
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 1.7e-07 59.3 54 50.0
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 1.7e-07 59.3 60 43.3
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 2.2e-07 58.9 54 50.0
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 2.2e-07 58.9 65 41.5
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 2.9e-07 58.5 56 50.0
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 3.8e-07 58.2 54 48.1
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 3.8e-07 58.2 55 49.1
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 4.9e-07 57.8 59 45.8
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 4.9e-07 57.8 54 48.1
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 4.9e-07 57.8 54 48.1
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 4.9e-07 57.8 54 48.1
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 4.9e-07 57.8 54 48.1
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 6.4e-07 57.4 90 37.8
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 6.4e-07 57.4 60 46.7
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 8.4e-07 57.0 54 46.3
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.1e-06 56.6 54 48.1
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 1.4e-06 56.2 50 50.0
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 1.4e-06 56.2 55 52.7
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.4e-06 56.2 59 42.4
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.9e-06 55.8 49 51.0
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.9e-06 55.8 50 48.0
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.4e-06 55.5 83 37.3
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.4e-06 55.5 54 48.1
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.4e-06 55.5 54 48.1
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 2.4e-06 55.5 54 46.3
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.2e-06 55.1 59 44.1
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 4.2e-06 54.7 60 46.7
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 4.2e-06 54.7 83 38.6
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 4.2e-06 54.7 50 48.0
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 5.4e-06 54.3 54 44.4
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 5.4e-06 54.3 54 44.4
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 7.1e-06 53.9 50 50.0
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 9.3e-06 53.5 75 42.7
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 9.3e-06 53.5 59 42.4
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 9.3e-06 53.5 50 46.0
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 9.3e-06 53.5 59 42.4
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 9.3e-06 53.5 59 42.4
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 9.3e-06 53.5 54 48.1
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 9.3e-06 53.5 54 46.3
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 9.3e-06 53.5 52 46.2


User provided reference genes

Program Settings