Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 0.0e+00 1314.7 667 100.0
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 0.0e+00 1302.0 667 98.8
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 0.0e+00 1265.4 667 96.3
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 0.0e+00 1260.7 668 96.3
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 0.0e+00 1184.1 631 95.7
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 5.2e-298 1027.3 694 80.7
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 5.7e-289 997.3 667 81.1
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 1.4e-287 992.6 667 80.4
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 1.8e-287 992.3 667 80.4
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 2.0e-286 988.8 667 80.5
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 5.9e-286 987.3 667 80.8
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 1.3e-285 986.1 687 78.9
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 1.9e-284 982.2 667 80.4
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 4.5e-278 961.1 694 76.4
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 2.9e-277 958.4 694 76.4
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 3.4e-265 918.3 694 73.5
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 1.4e-242 843.2 674 71.4
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 9.4e-199 697.6 670 62.4
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 3.7e-171 605.9 683 54.9
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 3.3e-167 592.8 437 75.5
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 2.0e-164 583.6 659 54.5
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 9.2e-162 574.7 673 53.3
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 1.6e-161 573.9 680 53.4
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 4.6e-161 572.4 698 53.2
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 2.3e-160 570.1 675 54.1
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 1.6e-158 563.9 675 53.3
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 3.6e-158 562.8 682 52.3
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 4.7e-158 562.4 681 52.3
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 2.3e-157 560.1 670 53.0
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 8.9e-157 558.1 650 52.9
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 2.6e-156 556.6 673 52.9
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 1.3e-155 554.3 669 51.7
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 5.4e-154 548.9 681 51.4
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 1.6e-153 547.4 670 53.0
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 1.3e-152 544.3 679 50.2
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 1.3e-152 544.3 662 52.7
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 5.0e-152 542.3 702 49.6
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 1.8e-149 533.9 671 51.4
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 3.1e-149 533.1 673 51.9
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 5.8e-148 528.9 674 52.2
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 7.5e-148 528.5 667 51.4
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 8.3e-147 525.0 673 50.4
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.4e-146 523.5 662 51.2
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 4.1e-146 522.7 664 51.8
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 5.4e-146 522.3 659 51.1
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 7.1e-146 521.9 671 50.7
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 9.2e-146 521.5 666 50.8
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 9.2e-146 521.5 606 54.6
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 3.5e-145 519.6 671 50.7
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 3.5e-145 519.6 607 53.4
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 3.5e-145 519.6 662 51.5
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 4.6e-145 519.2 664 51.1
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 7.8e-145 518.5 629 53.1
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 3.9e-144 516.2 673 50.4
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 8.6e-144 515.0 613 53.8
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 1.9e-143 513.8 618 53.4
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 3.3e-143 513.1 671 50.4
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 4.3e-143 512.7 668 50.0
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 7.3e-143 511.9 672 51.0
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 1.2e-142 511.1 668 49.7
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 2.8e-142 510.0 664 50.2
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 3.6e-142 509.6 671 49.8
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 1.8e-141 507.3 679 49.6
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 4.0e-141 506.1 679 50.2
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 3.4e-140 503.1 670 50.3
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 1.3e-139 501.1 643 50.4
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 2.9e-139 500.0 634 50.5
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 5.4e-138 495.7 657 48.9
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 2.7e-137 493.4 663 48.6
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 1.0e-136 491.5 681 48.5
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 1.3e-136 491.1 677 47.3
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 3.0e-136 490.0 675 47.4
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 1.1e-135 488.0 668 48.2
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 1.1e-135 488.0 842 41.9
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 1.2e-134 484.6 708 45.8
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 4.7e-134 482.6 667 48.3
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 3.1e-133 479.9 661 46.9
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 8.9e-133 478.4 665 48.1
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 1.2e-132 478.0 590 48.6
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 1.5e-132 477.6 667 48.6
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 2.0e-132 477.2 672 47.9
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 2.0e-132 477.2 672 48.1
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 3.4e-132 476.5 715 45.3
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 6.4e-131 472.2 696 47.1
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 1.4e-130 471.1 736 44.8
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 1.9e-130 470.7 649 47.6
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 3.5e-129 466.5 717 44.8
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 2.3e-128 463.8 667 47.4
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 3.0e-128 463.4 666 45.6
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 3.0e-128 463.4 688 47.8
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 1.3e-126 458.0 669 46.3
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 1.6e-126 457.6 632 46.7
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 1.1e-125 454.9 669 46.2
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 2.4e-125 453.8 636 49.1
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 2.6e-124 450.3 643 45.9
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.7e-123 447.6 677 45.9
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.3e-120 437.2 660 46.5
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 5.1e-120 436.0 581 47.3
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.5e-119 434.5 661 46.1
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 5.6e-119 432.6 673 45.6
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 5.6e-119 432.6 650 45.8
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 6.2e-118 429.1 689 43.1
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 8.1e-118 428.7 679 44.8
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.4e-117 427.9 687 45.3
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.9e-114 417.5 668 44.8
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 3.2e-114 416.8 715 43.2
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 1.3e-112 411.4 579 47.8
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 9.6e-111 405.2 662 43.5
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 1.6e-110 404.4 602 45.3
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 4.8e-110 402.9 632 44.8
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 6.9e-109 399.1 623 42.4
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 6.5e-107 392.5 752 41.8
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 8.7e-104 382.1 659 42.0
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 4.3e-103 379.8 598 45.3
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 6.9e-101 372.5 638 41.1
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 2.2e-94 350.9 622 39.7
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 2.8e-94 350.5 656 38.7
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 1.2e-92 345.1 250 75.2
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 1.3e-75 288.5 602 35.9
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 4.2e-74 283.5 486 42.6
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 1.2e-71 275.4 699 34.3
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 5.3e-69 266.5 575 36.9
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 3.5e-68 263.8 652 34.4
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 1.6e-57 228.4 638 30.7
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 1.4e-45 188.7 649 29.3
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 4.6e-44 183.7 728 28.7
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 6.6e-43 179.9 490 34.1
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 2.2e-38 164.9 158 57.0
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.4e-37 162.2 161 54.7
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 7.8e-36 156.4 314 37.6
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.3e-35 155.6 213 46.9
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 6.8e-24 116.7 117 54.7
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 1.2e-23 115.9 82 72.0
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 3.4e-23 114.4 131 51.1
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 4.4e-23 114.0 626 27.6
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 1.6e-20 105.5 105 48.6
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 4.9e-14 84.0 205 28.3
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 2.6e-07 61.6 63 47.6
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.3e-06 59.3 71 47.9


User provided reference genes

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