Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 0.0e+00 1355.9 673 100.0
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 0.0e+00 1348.6 673 99.3
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 0.0e+00 1301.6 673 96.0
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 0.0e+00 1293.1 673 95.4
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 0.0e+00 1286.9 673 95.1
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 0.0e+00 1192.2 681 88.4
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 0.0e+00 1172.5 685 86.4
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 0.0e+00 1157.5 677 85.7
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 0.0e+00 1157.1 676 85.5
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 0.0e+00 1122.1 684 82.6
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 0.0e+00 1103.2 685 79.6
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 9.3e-271 936.8 660 71.7
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 2.2e-235 819.3 679 62.3
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 1.1e-226 790.4 685 60.3
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 4.1e-226 788.5 692 59.0
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 2.9e-224 782.3 678 59.3
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 3.8e-224 781.9 682 60.1
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 8.5e-224 780.8 692 58.7
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.9e-223 779.6 692 58.5
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 9.4e-223 777.3 681 59.3
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 1.0e-221 773.9 680 60.0
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 3.0e-221 772.3 667 59.1
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 3.9e-221 771.9 680 58.7
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 3.9e-221 771.9 680 59.7
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 1.1e-220 770.4 661 60.2
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 7.4e-220 767.7 670 58.5
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 3.7e-219 765.4 640 59.7
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 1.2e-217 760.4 676 57.2
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 7.2e-215 751.1 677 57.3
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 6.8e-213 744.6 665 58.8
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 1.7e-208 729.9 679 56.0
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 5.5e-207 724.9 671 56.9
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 1.6e-206 723.4 729 53.4
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 1.6e-206 723.4 675 57.2
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 2.7e-206 722.6 676 56.1
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 3.6e-206 722.2 683 54.9
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 5.2e-205 718.4 689 54.1
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 1.2e-204 717.2 680 55.4
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 5.7e-204 714.9 679 55.4
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 7.5e-204 714.5 683 55.2
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 7.5e-204 714.5 683 55.3
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 6.3e-203 711.4 677 55.2
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 8.3e-203 711.1 665 56.1
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 1.1e-202 710.7 679 54.8
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 2.4e-202 709.5 665 55.9
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 1.6e-201 706.8 684 54.8
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 3.5e-201 705.7 686 54.5
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 4.5e-201 705.3 680 55.6
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 5.9e-201 704.9 664 55.6
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 8.6e-200 701.0 673 54.5
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 1.9e-199 699.9 665 54.7
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 2.5e-199 699.5 686 54.8
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 2.5e-199 699.5 691 53.8
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 5.5e-199 698.4 670 54.5
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 7.2e-199 698.0 662 55.1
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 7.2e-199 698.0 686 54.4
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.2e-198 697.2 681 53.7
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 1.2e-198 697.2 665 54.9
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 1.2e-198 697.2 686 53.5
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.6e-198 696.8 681 53.7
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 2.8e-198 696.0 665 55.9
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 4.7e-198 695.3 684 55.0
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 6.1e-198 694.9 715 51.9
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 1.8e-197 693.3 668 55.7
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 3.0e-197 692.6 671 54.4
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.5e-196 690.3 765 48.9
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 7.5e-196 688.0 674 54.5
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 8.3e-195 684.5 680 54.4
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 1.1e-194 684.1 403 86.1
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 3.2e-194 682.6 673 53.9
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 4.1e-194 682.2 679 53.5
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 7.8e-193 677.9 670 52.5
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 7.8e-193 677.9 691 53.3
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 8.6e-192 674.5 673 52.2
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 1.4e-189 667.2 682 52.5
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 2.9e-187 659.4 725 51.2
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 1.6e-185 653.7 683 53.0
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 1.9e-183 646.7 688 52.9
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 4.7e-182 642.1 706 49.9
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 4.9e-179 632.1 516 62.0
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 7.1e-178 628.2 672 51.0
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 9.2e-178 627.9 527 61.1
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 1.2e-174 617.5 668 50.3
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 4.9e-171 605.5 665 48.7
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 1.1e-170 604.4 683 48.0
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 4.1e-170 602.4 674 49.6
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 9.2e-170 601.3 681 51.2
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 6.0e-169 598.6 656 49.2
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 1.5e-164 583.9 481 61.5
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 2.2e-163 580.1 657 49.5
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 2.1e-161 573.5 514 57.4
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 3.5e-145 519.6 678 43.2
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 9.6e-143 511.5 528 52.3
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 3.1e-141 506.5 544 52.4
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 4.8e-126 456.1 657 40.8
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 6.5e-115 419.1 667 40.3
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 7.9e-113 412.1 663 36.7
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 2.3e-104 384.0 668 36.2
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 4.2e-90 336.7 400 48.2
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 4.5e-84 316.6 263 61.2
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 7.0e-77 292.7 469 36.9
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.9e-69 268.1 514 34.6
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 2.3e-56 224.6 445 35.3
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 3.4e-39 167.5 248 39.1
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.1e-37 162.5 397 30.2
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 6.7e-35 153.3 93 87.1
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 8.7e-35 152.9 184 44.0
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 5.6e-34 150.2 149 51.7
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 2.0e-31 141.7 99 66.7
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 9.9e-31 139.4 94 78.7
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 4.6e-28 130.6 238 33.6
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 3.1e-24 117.9 86 61.6
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 3.9e-19 100.9 99 51.5
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 1.1e-18 99.4 147 42.2
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 4.3e-18 97.4 97 52.6
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 2.4e-16 91.7 120 45.0
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 1.4e-13 82.4 74 56.8
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 2.3e-11 75.1 63 52.4
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 1.2e-07 62.8 64 50.0
BcaC01g01575 Brassica carinata HOM05D006559 ORTHO05D019951 1.7e-06 58.9 46 67.4


User provided reference genes

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