Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 1.6e-81 306.2 170 100.0
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 7.2e-79 297.4 170 96.5
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 1.8e-69 266.2 177 87.6
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 5.7e-68 261.2 177 85.9
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 2.3e-61 239.2 177 79.7
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 2.3e-61 239.2 177 79.7
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 4.0e-61 238.4 178 80.3
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 8.3e-59 230.7 172 71.5
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 3.7e-43 178.7 168 62.5
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 3.5e-41 172.2 167 56.9
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 2.6e-36 156.0 168 55.4
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 3.4e-36 155.6 168 54.8
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 3.5e-33 145.6 168 52.4
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 1.7e-32 143.3 168 52.4
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 6.8e-29 131.3 167 50.9
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 6.4e-27 124.8 169 48.5
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.7e-25 119.4 180 47.2
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 7.8e-25 117.9 194 42.8
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 1.7e-24 116.7 161 44.1
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 1.9e-23 113.2 162 44.4
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.1e-22 109.8 171 44.4
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 3.6e-22 109.0 167 43.7
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.6e-22 109.0 166 43.4
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 4.7e-22 108.6 160 42.5
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 2.4e-21 106.3 161 44.1
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 3.1e-21 105.9 167 42.5
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 5.2e-21 105.1 159 44.0
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 5.2e-21 105.1 157 46.5
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.5e-20 103.6 167 41.3
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.5e-20 103.6 167 43.1
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.0e-20 103.2 167 42.5
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 5.8e-20 101.7 155 45.2
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 9.9e-20 100.9 162 41.4
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 9.9e-20 100.9 166 42.2
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 9.9e-20 100.9 157 43.3
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 1.3e-19 100.5 164 41.5
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.2e-19 99.8 166 41.0
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 2.2e-19 99.8 159 42.8
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 6.4e-19 98.2 155 43.2
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.1e-18 97.4 163 41.1
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-18 97.1 155 43.2
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.4e-18 97.1 158 41.8
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 1.4e-18 97.1 159 39.6
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 1.9e-18 96.7 160 42.5
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.9e-18 96.7 162 40.1
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 1.9e-18 96.7 160 40.0
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 1.9e-18 96.7 163 39.3
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 3.2e-18 95.9 161 42.9
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.2e-18 95.5 167 41.3
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 4.2e-18 95.5 152 39.5
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 5.4e-18 95.1 155 42.6
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 7.1e-18 94.7 156 39.7
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 9.3e-18 94.4 167 40.7
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 1.6e-17 93.6 163 41.1
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.1e-17 93.2 155 40.6
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 2.7e-17 92.8 166 40.4
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 4.6e-17 92.0 179 43.0
BcaB04g18929 Brassica carinata HOM05D021100 ORTHO05D021772 6.0e-17 91.7 156 40.4
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 7.8e-17 91.3 160 39.4
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 1.7e-16 90.1 166 39.8
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.3e-16 89.7 163 38.0
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.3e-16 89.7 163 38.0
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 2.3e-16 89.7 167 43.1
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 2.3e-16 89.7 152 40.1
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 3.0e-16 89.4 157 42.7
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 3.0e-16 89.4 167 36.5
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.1e-16 88.6 162 39.5
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 8.7e-16 87.8 159 37.7
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 8.7e-16 87.8 161 38.5
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 8.7e-16 87.8 144 40.3
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 8.7e-16 87.8 144 40.3
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 1.1e-15 87.4 160 40.6
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 1.5e-15 87.0 162 37.0
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.9e-15 86.7 163 38.7
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.9e-15 86.7 192 43.2
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 1.9e-15 86.7 165 36.4
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 2.5e-15 86.3 123 44.7
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.3e-15 85.9 128 42.2
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 7.3e-15 84.7 156 35.3
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 9.6e-15 84.3 166 37.3
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.1e-14 83.2 155 38.1
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.1e-14 83.2 158 39.9
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 2.8e-14 82.8 195 40.5
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.6e-14 82.4 169 36.7
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 1.1e-13 80.9 158 37.3
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 3.1e-13 79.3 172 34.3
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 5.3e-13 78.6 200 36.0
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 6.9e-13 78.2 177 40.7
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 6.9e-13 78.2 160 33.8
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 6.9e-13 78.2 129 41.9
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 1.5e-12 77.0 103 43.7
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.0e-12 76.6 168 35.1
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 2.6e-12 76.3 186 38.7
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 3.4e-12 75.9 160 33.8
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 3.4e-12 75.9 168 36.9
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 3.4e-12 75.9 164 36.6
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 3.4e-12 75.9 164 36.6
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 3.4e-12 75.9 163 36.2
BraA03t13172Z Brassica rapa HOM05D021100 ORTHO05D021772 4.5e-12 75.5 118 40.7
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 4.5e-12 75.5 161 38.5
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 5.8e-12 75.1 164 36.6
BolC3t17141H Brassica oleracea HOM05D021100 ORTHO05D021772 7.6e-12 74.7 110 42.7
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 7.6e-12 74.7 148 37.8
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.3e-11 73.9 122 41.0
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 1.7e-11 73.6 159 36.5
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 1.7e-11 73.6 104 42.3
C03p48620 Brassica napus HOM05D021100 ORTHO05D021772 2.2e-11 73.2 118 40.7
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 2.9e-11 72.8 201 36.8
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 4.9e-11 72.0 165 35.8
BraA03t13170Z Brassica rapa HOM05D021100 ORTHO05D021772 4.9e-11 72.0 101 42.6
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 4.9e-11 72.0 101 41.6
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 6.4e-11 71.6 161 35.4
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.4e-11 71.6 154 33.8
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 1.1e-10 70.9 158 36.7
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 2.4e-10 69.7 157 34.4
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 2.4e-10 69.7 159 34.0
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 3.2e-10 69.3 101 40.6
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 4.2e-10 68.9 120 39.2
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 5.4e-10 68.6 104 41.3
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 7.1e-10 68.2 130 36.9
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 7.1e-10 68.2 120 38.3
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 9.3e-10 67.8 113 38.9
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 1.2e-09 67.4 154 30.5
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-09 67.4 127 38.6
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.6e-09 67.0 148 35.8
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 2.7e-09 66.2 155 34.2
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 2.7e-09 66.2 125 34.4
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 3.5e-09 65.9 87 44.8
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.5e-09 65.9 158 34.2
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 3.5e-09 65.9 83 48.2
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 3.5e-09 65.9 83 48.2
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 3.5e-09 65.9 83 48.2
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 3.5e-09 65.9 83 48.2
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 3.5e-09 65.9 161 32.9
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 4.6e-09 65.5 158 34.2
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 6.0e-09 65.1 113 37.2
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 1.0e-08 64.3 123 34.1
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.0e-08 64.3 83 48.2
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.3e-08 63.9 159 30.8
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.3e-08 63.9 110 37.3
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 1.3e-08 63.9 132 37.1
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-08 63.9 83 48.2
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 1.8e-08 63.5 83 47.0
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 1.8e-08 63.5 113 38.9
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-08 63.2 83 47.0
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 3.0e-08 62.8 146 34.9
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.9e-08 62.4 104 43.3
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.9e-08 62.4 142 34.5
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 3.9e-08 62.4 119 37.0
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 5.1e-08 62.0 191 30.4
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 5.1e-08 62.0 160 35.6
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 5.1e-08 62.0 83 48.2
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 8.7e-08 61.2 114 40.4
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.1e-07 60.8 119 37.8
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 1.1e-07 60.8 124 34.7
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-07 60.1 83 45.8
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-07 60.1 83 45.8
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 5.6e-07 58.5 122 32.0
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 5.6e-07 58.5 102 39.2
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 7.4e-07 58.2 118 39.0
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.6e-07 57.8 142 32.4
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 9.6e-07 57.8 83 44.6
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 4.8e-06 55.5 102 40.2
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.8e-06 55.5 208 28.8
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 6.2e-06 55.1 215 27.0
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.2e-06 55.1 117 33.3
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 8.1e-06 54.7 99 35.4


User provided reference genes

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