Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p36890 Brassica napus HOM05D003268 ORTHO05D003719 2.9e-86 322.0 181 100.0
BraA01t03748Z Brassica rapa HOM05D003268 ORTHO05D003719 3.2e-85 318.5 181 98.3
BcaC09g48702 Brassica carinata HOM05D003268 ORTHO05D003719 3.4e-79 298.5 172 91.9
C01p46780 Brassica napus HOM05D003268 ORTHO05D003719 3.4e-79 298.5 172 91.9
BolC1t04651H Brassica oleracea HOM05D003268 ORTHO05D003719 3.4e-79 298.5 172 91.9
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 5.9e-63 244.6 168 79.2
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 5.9e-63 244.6 168 79.2
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 2.0e-55 219.5 166 76.5
C01p46720 Brassica napus HOM05D003268 ORTHO05D003719 8.5e-54 214.2 154 75.3
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 5.4e-48 194.9 199 59.8
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 6.1e-44 181.4 199 55.8
Carub.0003s1718 Capsella rubella HOM05D003268 ORTHO05D003719 8.6e-38 161.0 192 53.6
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 4.7e-36 155.2 197 51.8
AL3G30540 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 4.4e-34 148.7 195 52.8
AT3G17460 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 2.4e-32 142.9 187 51.9
C05p48980 Brassica napus HOM05D003268 ORTHO05D003719 4.1e-32 142.1 180 52.2
BolC5t33638H Brassica oleracea HOM05D003268 ORTHO05D003719 4.1e-32 142.1 180 52.2
BcaC05g28789 Brassica carinata HOM05D003268 ORTHO05D003719 7.0e-32 141.4 181 54.1
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 2.0e-31 139.8 185 45.9
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 2.0e-31 139.8 176 47.2
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 4.6e-31 138.7 165 51.5
BcaB06g25842 Brassica carinata HOM05D003268 ORTHO05D003719 6.0e-31 138.3 184 48.4
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 1.7e-30 136.7 200 44.0
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 1.1e-29 134.0 202 43.6
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 2.8e-28 129.4 191 42.4
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 2.8e-28 129.4 194 42.8
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 3.6e-28 129.0 193 42.5
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 3.6e-28 129.0 193 42.5
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 2.3e-27 126.3 184 43.5
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 4.9e-25 118.6 180 40.6
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 4.9e-25 118.6 181 40.3
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 1.4e-24 117.1 179 40.8
TWI09G0361 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 3.2e-24 115.9 171 41.5
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 7.0e-24 114.8 181 41.4
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 1.6e-23 113.6 174 42.0
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 4.6e-23 112.1 167 38.3
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 6.0e-23 111.7 174 42.0
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 1.3e-22 110.5 202 39.1
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 2.3e-22 109.8 167 37.7
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 3.0e-22 109.4 170 42.9
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 1.1e-21 107.5 199 41.7
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 1.2e-20 104.0 140 43.6
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 1.2e-20 104.0 140 42.9
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 1.6e-20 103.6 180 39.4
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 2.1e-20 103.2 170 36.5
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 2.8e-20 102.8 166 39.2
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 4.7e-20 102.1 182 36.8
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 8.1e-20 101.3 185 36.8
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 1.4e-19 100.5 169 39.1
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 1.8e-19 100.1 176 38.1
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 3.1e-19 99.4 184 35.9
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 4.0e-19 99.0 176 35.8
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 5.2e-19 98.6 177 35.6
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 6.8e-19 98.2 167 35.9
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 6.8e-19 98.2 184 36.4
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 1.5e-18 97.1 188 34.6
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 1.5e-18 97.1 176 36.4
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 2.0e-18 96.7 183 38.3
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 4.4e-18 95.5 183 35.0
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 5.8e-18 95.1 171 36.8
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 7.5e-18 94.7 186 35.5
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 9.9e-18 94.4 184 34.2
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 1.3e-17 94.0 178 34.3
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 3.7e-17 92.4 169 36.7
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 4.9e-17 92.0 170 36.5
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 4.9e-17 92.0 170 36.5
Lj4g0025064 Lotus japonicus HOM05D003268 ORTHO05D003719 6.4e-17 91.7 178 36.0
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 6.4e-17 91.7 175 34.9
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 1.1e-16 90.9 184 32.1
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 1.4e-16 90.5 170 34.7
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 1.9e-16 90.1 177 33.9
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.9e-16 90.1 163 36.8
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 1.9e-16 90.1 163 36.8
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 2.4e-16 89.7 185 36.2
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 3.2e-16 89.4 175 33.7
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 4.1e-16 89.0 180 32.8
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 4.1e-16 89.0 176 35.2
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 5.4e-16 88.6 176 34.7
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 5.4e-16 88.6 165 35.8
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 7.1e-16 88.2 176 34.1
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 9.2e-16 87.8 179 39.1
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.2e-15 87.4 163 35.0
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 2.1e-15 86.7 182 34.6
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 2.7e-15 86.3 183 32.2
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 3.5e-15 85.9 162 35.8
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 4.6e-15 85.5 182 33.5
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 4.6e-15 85.5 162 35.2
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 4.6e-15 85.5 176 35.2
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 4.6e-15 85.5 163 35.0
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 6.0e-15 85.1 176 35.2
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 6.0e-15 85.1 157 35.7
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 6.0e-15 85.1 185 30.8
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 7.8e-15 84.7 177 33.9
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.7e-14 83.6 166 35.5
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.7e-14 83.6 171 35.1
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 3.0e-14 82.8 163 33.7
A01p36840 Brassica napus HOM05D003268 ORTHO05D003719 5.1e-14 82.0 48 93.8
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 5.1e-14 82.0 187 31.6
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 5.1e-14 82.0 166 36.1
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 5.1e-14 82.0 185 33.5
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 6.6e-14 81.6 166 34.9
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 6.6e-14 81.6 166 34.9
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 6.6e-14 81.6 186 32.3
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 8.6e-14 81.3 169 31.4
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 8.6e-14 81.3 177 32.2
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 8.6e-14 81.3 183 32.2
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 1.1e-13 80.9 150 37.3
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 1.1e-13 80.9 150 37.3
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.5e-13 80.5 167 34.7
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 1.5e-13 80.5 187 31.6
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 1.5e-13 80.5 181 32.0
A01p36860 Brassica napus HOM05D003268 ORTHO05D003719 1.9e-13 80.1 48 91.7
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 1.9e-13 80.1 182 34.6
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 1.9e-13 80.1 187 31.6
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 2.5e-13 79.7 183 31.1
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 2.5e-13 79.7 181 33.1
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 3.3e-13 79.3 175 33.7
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 3.3e-13 79.3 182 33.0
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 4.3e-13 79.0 172 35.5
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 4.3e-13 79.0 175 34.3
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 5.6e-13 78.6 154 33.1
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 7.3e-13 78.2 154 32.5
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 9.6e-13 77.8 186 31.2
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 1.2e-12 77.4 171 33.9
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 1.2e-12 77.4 172 33.7
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 1.2e-12 77.4 172 33.7
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 1.2e-12 77.4 181 29.8
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 1.2e-12 77.4 162 33.3
A01p36820 Brassica napus HOM05D003268 ORTHO05D003719 1.6e-12 77.0 48 87.5
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 2.8e-12 76.3 155 32.9
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 2.8e-12 76.3 201 33.3
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 3.6e-12 75.9 167 32.9
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 4.7e-12 75.5 172 33.1
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 4.7e-12 75.5 172 33.1
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 6.2e-12 75.1 178 32.6
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 8.1e-12 74.7 166 34.3
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 8.1e-12 74.7 154 33.1
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 8.1e-12 74.7 177 31.6
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 8.1e-12 74.7 181 29.3
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 1.1e-11 74.3 186 31.2
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.8e-11 73.6 182 33.5
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 3.1e-11 72.8 173 33.5
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 3.1e-11 72.8 161 31.1
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 3.1e-11 72.8 172 27.9
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 4.0e-11 72.4 152 28.9
Lalb_Chr02g0147571 Lupinus albus HOM05D003268 ORTHO05D003719 5.2e-11 72.0 158 32.3
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 5.2e-11 72.0 154 30.5
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 6.8e-11 71.6 177 32.2
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.0e-10 70.1 177 31.1
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 2.0e-10 70.1 146 36.3
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 4.4e-10 68.9 177 30.5
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 4.4e-10 68.9 177 30.5
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 2.2e-09 66.6 176 31.2
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 2.9e-09 66.2 169 31.4
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 2.9e-09 66.2 171 33.3
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 2.9e-09 66.2 183 30.6
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 3.8e-09 65.9 193 27.5
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 4.9e-09 65.5 187 29.4
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 6.4e-09 65.1 186 29.0
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 1.1e-08 64.3 171 32.2
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 4.2e-08 62.4 174 28.7
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 5.4e-08 62.0 142 35.2
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 9.3e-08 61.2 139 32.4


User provided reference genes

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