Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p36690 Brassica napus HOM05D002436 ORTHO05D100244 6.3e-35 150.6 99 100.0
C09p42120 Brassica napus HOM05D002436 ORTHO05D002754 2.7e-09 65.5 34 97.1
BcaB02g07175 Brassica carinata HOM05D002436 ORTHO05D002754 1.0e-08 63.5 49 69.4
AL6G44840 Arabidopsis lyrata HOM05D002436 ORTHO05D002754 2.3e-08 62.4 79 74.7
AT4G10790 Arabidopsis thaliana HOM05D002436 ORTHO05D002754 5.1e-08 61.2 91 68.1
Nitab4.5_0005042g0020 Nicotiana tabacum HOM05D002436 ORTHO05D002754 6.6e-08 60.8 43 72.1
BcaB01g01515 Brassica carinata HOM05D002436 ORTHO05D002754 1.1e-07 60.1 40 80.0
BcaC04g21075 Brassica carinata HOM05D002436 ORTHO05D002754 1.1e-07 60.1 40 80.0
A09p28440 Brassica napus HOM05D002436 ORTHO05D002754 1.1e-07 60.1 40 80.0
C09p36010 Brassica napus HOM05D002436 ORTHO05D002754 1.1e-07 60.1 40 80.0
BolC9t56435H Brassica oleracea HOM05D002436 ORTHO05D002754 1.1e-07 60.1 40 80.0
BraA09t38409Z Brassica rapa HOM05D002436 ORTHO05D002754 1.1e-07 60.1 40 80.0
CARHR255810 Cardamine hirsuta HOM05D002436 ORTHO05D002754 1.1e-07 60.1 108 60.2
unitig_0.g2235 Utricularia gibba HOM05D002436 ORTHO05D002754 1.1e-07 60.1 54 63.0
BcaC02g11718 Brassica carinata HOM05D002436 ORTHO05D040030 1.9e-07 59.3 93 48.4
BcaB01g02738 Brassica carinata HOM05D002436 ORTHO05D002754 3.3e-07 58.5 32 93.8
BcaB05g23885 Brassica carinata HOM05D002436 ORTHO05D002754 3.3e-07 58.5 32 93.8
BcaC01g04662 Brassica carinata HOM05D002436 ORTHO05D002754 3.3e-07 58.5 32 93.8
A03p29290 Brassica napus HOM05D002436 ORTHO05D002754 3.3e-07 58.5 32 93.8
C03p35190 Brassica napus HOM05D002436 ORTHO05D002754 3.3e-07 58.5 32 93.8
BolC3t15830H Brassica oleracea HOM05D002436 ORTHO05D002754 3.3e-07 58.5 32 93.8
BraA03t12125Z Brassica rapa HOM05D002436 ORTHO05D002754 3.3e-07 58.5 32 93.8
Migut.F01458 Erythranthe guttata HOM05D002436 ORTHO05D002754 3.3e-07 58.5 43 69.8
EL10Ac5g12460 Beta vulgaris HOM05D002436 ORTHO05D002754 4.3e-07 58.2 49 63.3
Nitab4.5_0002728g0040 Nicotiana tabacum HOM05D002436 ORTHO05D002754 4.3e-07 58.2 43 69.8
Peaxi162Scf00102g01851 Petunia axillaris HOM05D002436 ORTHO05D002754 4.3e-07 58.2 43 69.8
BcaC04g20560 Brassica carinata HOM05D002436 ORTHO05D002754 5.6e-07 57.8 31 96.8
SalBow6G0415 Salvia bowleyana HOM05D002436 ORTHO05D002754 5.6e-07 57.8 43 69.8
Potri.001G085600 Populus trichocarpa HOM05D002436 ORTHO05D002754 7.3e-07 57.4 102 56.9
Solyc08g082970.4 Solanum lycopersicum HOM05D002436 ORTHO05D002754 7.3e-07 57.4 54 61.1
PGSC0003DMG400012245 Solanum tuberosum HOM05D002436 ORTHO05D002754 7.3e-07 57.4 54 59.3
SGA_v2.0_scaffold2G01023 Striga asiatica HOM05D002436 ORTHO05D002754 7.3e-07 57.4 43 69.8
Aa31LG9G11290 Aethionema arabicum HOM05D002436 ORTHO05D002754 9.5e-07 57.0 43 69.8
Carub.0006s2956 Capsella rubella HOM05D002436 ORTHO05D002754 9.5e-07 57.0 32 90.6
Hund11359 Selenicereus undatus HOM05D002436 ORTHO05D002754 9.5e-07 57.0 34 82.4
C04p12030 Brassica napus HOM05D002436 ORTHO05D040030 1.2e-06 56.6 90 46.7
DCAR_006530 Daucus carota HOM05D002436 ORTHO05D002754 1.2e-06 56.6 43 67.4
Eucgr.D01693 Eucalyptus grandis HOM05D002436 ORTHO05D002754 1.2e-06 56.6 43 69.8
Thhalv10028607m.g Eutrema salsugineum HOM05D002436 ORTHO05D002754 1.2e-06 56.6 32 90.6
THA.LOC104815202 Tarenaya hassleriana HOM05D002436 ORTHO05D002754 1.2e-06 56.6 86 67.4
Aa31LG6G7270 Aethionema arabicum HOM05D002436 ORTHO05D002754 1.6e-06 56.2 43 69.8
Ah.12g053050 Amaranthus hybridus HOM05D002436 ORTHO05D002754 1.6e-06 56.2 34 82.4
CSS0026665 Camellia sinensis var. sinensis HOM05D002436 ORTHO05D002754 1.6e-06 56.2 32 87.5
CAN.G567.74 Capsicum annuum HOM05D002436 ORTHO05D002754 1.6e-06 56.2 43 67.4
CsaV3_5G014170 Cucumis sativus L. HOM05D002436 ORTHO05D002754 1.6e-06 56.2 105 58.1
Nitab4.5_0001962g0050 Nicotiana tabacum HOM05D002436 ORTHO05D002754 1.6e-06 56.2 43 67.4
Potri.003G145200 Populus trichocarpa HOM05D002436 ORTHO05D002754 1.6e-06 56.2 102 59.8
Sed0007254 Sechium edule HOM05D002436 ORTHO05D002754 1.6e-06 56.2 43 67.4
Sed0009775 Sechium edule HOM05D002436 ORTHO05D002754 1.6e-06 56.2 43 67.4
Solyc08g008510.3 Solanum lycopersicum HOM05D002436 ORTHO05D002754 1.6e-06 56.2 43 67.4
Sopen08g004360 Solanum pennellii HOM05D002436 ORTHO05D002754 1.6e-06 56.2 43 67.4
PGSC0003DMG400005799 Solanum tuberosum HOM05D002436 ORTHO05D002754 1.6e-06 56.2 43 67.4
Actinidia27295 Actinidia chinensis HOM05D002436 ORTHO05D002754 2.1e-06 55.8 43 67.4
Cpa.g.sc175.7 Carica papaya HOM05D002436 ORTHO05D002754 2.1e-06 55.8 43 67.4
AUR62019899 Chenopodium quinoa HOM05D002436 ORTHO05D002754 2.1e-06 55.8 43 67.4
ClCG01G001610 Citrullus lanatus HOM05D002436 ORTHO05D002754 2.1e-06 55.8 102 55.9
Thhalv10025495m.g Eutrema salsugineum HOM05D002436 ORTHO05D002754 2.1e-06 55.8 32 87.5
Sabra01G0062000 Salix brachista HOM05D002436 ORTHO05D002754 2.1e-06 55.8 43 67.4
MSTRG.2012 Avicennia marina HOM05D002436 ORTHO05D002754 2.8e-06 55.5 43 67.4
CiPaw.12G078800 Carya illinoinensis HOM05D002436 ORTHO05D002754 2.8e-06 55.5 102 58.8
Lj2A158T86 Lonicera japonica HOM05D002436 ORTHO05D002754 2.8e-06 55.5 102 57.8
Prupe.5G127400 Prunus persica HOM05D002436 ORTHO05D002754 2.8e-06 55.5 91 63.7
Sabra03G0105600 Salix brachista HOM05D002436 ORTHO05D002754 2.8e-06 55.5 102 58.8
Sopen08g031190 Solanum pennellii HOM05D002436 ORTHO05D002754 2.8e-06 55.5 54 59.3
arahy.Tifrunner.gnm1.ann1.9SA85P Arachis hypogaea HOM05D002436 ORTHO05D002754 3.6e-06 55.1 43 67.4
arahy.Tifrunner.gnm1.ann1.EIUR6S Arachis hypogaea HOM05D002436 ORTHO05D002754 3.6e-06 55.1 43 67.4
CANSAT21G2172 Cannabis sativa HOM05D002436 ORTHO05D002754 3.6e-06 55.1 43 65.1
AUR62007035 Chenopodium quinoa HOM05D002436 ORTHO05D002754 3.6e-06 55.1 34 79.4
CsaV3_5G001770 Cucumis sativus L. HOM05D002436 ORTHO05D002754 3.6e-06 55.1 43 65.1
MD06G1114700 Malus domestica HOM05D002436 ORTHO05D002754 3.6e-06 55.1 89 64.0
Manes.02G004500 Manihot esculenta HOM05D002436 ORTHO05D002754 3.6e-06 55.1 43 67.4
Phvul.L005701 Phaseolus vulgaris HOM05D002436 ORTHO05D002754 3.6e-06 55.1 43 65.1
QL02p029000 Quercus lobata HOM05D002436 ORTHO05D002754 3.6e-06 55.1 32 84.4
RcHm_v2.0_Chr7g0186581 Rosa chinensis HOM05D002436 ORTHO05D002754 3.6e-06 55.1 44 61.4
C05p25750 Brassica napus HOM05D027564 ORTHO05D102904 4.7e-06 54.7 33 84.8
Dinv12194 Davidia involucrata HOM05D002436 ORTHO05D002754 4.7e-06 54.7 43 65.1
Duzib084G1267 Durio zibethinus HOM05D002436 ORTHO05D002754 4.7e-06 54.7 102 57.8
HanXRQChr13g0415531 Helianthus annuus HOM05D002436 ORTHO05D002754 4.7e-06 54.7 54 59.3
Medtr1g077740 Medicago truncatula HOM05D002436 ORTHO05D002754 4.7e-06 54.7 43 67.4
Nn1g00344 Nelumbo nucifera HOM05D002436 ORTHO05D002754 4.7e-06 54.7 32 84.4
Nitab4.5_0000673g0100 Nicotiana tabacum HOM05D002436 ORTHO05D002754 4.7e-06 54.7 43 65.1
Oeu041380.1 Olea europaea HOM05D000295 ORTHO05D002754 4.7e-06 54.7 43 67.4
PSO063G1665 Papaver somniferum HOM05D002436 ORTHO05D002754 4.7e-06 54.7 43 62.8
PSO782G5195 Papaver somniferum HOM05D002436 ORTHO05D002754 4.7e-06 54.7 43 62.8
Sc01g0010540 Simmondsia chinensis HOM05D002436 ORTHO05D002754 4.7e-06 54.7 32 84.4
Aqoxy7G00039 Aquilegia oxysepala HOM05D002436 ORTHO05D002754 6.2e-06 54.3 32 84.4
Ciclev10020047m.g Citrus clementina HOM05D002436 ORTHO05D002754 6.2e-06 54.3 43 62.8
Lsat_1_v5_gn_6_9060 Lactuca sativa HOM05D002436 ORTHO05D002754 6.2e-06 54.3 43 65.1
SHI06930 Sapria himalayana HOM05D002436 ORTHO05D002754 6.2e-06 54.3 32 84.4
Sp6g06710 Schrenkiella parvula HOM05D002436 ORTHO05D002754 6.2e-06 54.3 32 87.5
CSS0024505 Camellia sinensis var. sinensis HOM05D002436 ORTHO05D002754 8.1e-06 53.9 32 81.2
COL.COLO4_10773 Corchorus olitorius HOM05D002436 ORTHO05D002754 8.1e-06 53.9 43 65.1
Dinv02418 Davidia involucrata HOM05D002436 ORTHO05D002754 8.1e-06 53.9 43 65.1
Gohir.A02G097400 Gossypium hirsutum HOM05D002436 ORTHO05D002754 8.1e-06 53.9 43 65.1
Gohir.A12G239000 Gossypium hirsutum HOM05D002436 ORTHO05D002754 8.1e-06 53.9 43 65.1
Gohir.D03G086400 Gossypium hirsutum HOM05D002436 ORTHO05D002754 8.1e-06 53.9 43 65.1
Gohir.D12G240200 Gossypium hirsutum HOM05D002436 ORTHO05D002754 8.1e-06 53.9 43 65.1
Gorai.003G075800 Gossypium raimondii HOM05D002436 ORTHO05D002754 8.1e-06 53.9 43 65.1
Gorai.008G257200 Gossypium raimondii HOM05D002436 ORTHO05D002754 8.1e-06 53.9 43 65.1
Lj5g0019172 Lotus japonicus HOM05D002436 ORTHO05D002754 8.1e-06 53.9 43 65.1
MD14G1136100 Malus domestica HOM05D002436 ORTHO05D002754 8.1e-06 53.9 89 65.2
Manes.01G052108 Manihot esculenta HOM05D002436 ORTHO05D002754 8.1e-06 53.9 43 65.1
PGR031G1341 Punica granatum HOM05D002436 ORTHO05D002754 8.1e-06 53.9 43 65.1
vmacro11516 Vaccinium macrocarpon HOM05D002436 ORTHO05D002754 8.1e-06 53.9 30 90.0
VMungo0720G0667 Vigna mungo HOM05D002436 ORTHO05D002754 8.1e-06 53.9 43 65.1


User provided reference genes

Program Settings