Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1588.2 812 100.0
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 0.0e+00 1503.8 822 95.0
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1451.4 832 91.1
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 0.0e+00 1447.6 832 91.0
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1445.3 831 90.9
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1358.2 842 86.9
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 0.0e+00 1342.8 853 83.8
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 0.0e+00 1323.5 849 83.0
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 0.0e+00 1308.9 849 81.6
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 0.0e+00 1308.9 849 81.4
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 0.0e+00 1304.3 846 81.9
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 0.0e+00 1281.5 847 80.5
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 0.0e+00 1263.4 841 82.0
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1250.7 837 81.6
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 0.0e+00 1239.9 836 81.6
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 0.0e+00 1221.1 902 72.8
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1205.3 833 79.2
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1172.1 826 78.7
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 0.0e+00 1115.5 849 70.2
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1107.0 715 83.1
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 2.9e-258 895.6 868 58.1
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 1.2e-256 890.2 870 57.7
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 1.7e-255 886.3 865 57.5
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 8.6e-255 884.0 865 57.7
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 3.7e-250 868.6 879 55.9
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.7e-247 859.8 867 55.2
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 6.6e-247 857.8 867 55.4
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 5.6e-246 854.7 817 57.8
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.6e-245 852.0 868 55.0
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 5.8e-243 844.7 865 56.3
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 1.3e-242 843.6 904 54.0
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 4.9e-242 841.6 857 56.4
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 6.4e-242 841.3 856 57.6
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 6.4e-242 841.3 851 56.5
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 1.1e-241 840.5 872 55.6
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 1.4e-241 840.1 849 56.3
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 3.2e-241 839.0 873 55.9
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 1.2e-240 837.0 874 55.8
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 1.6e-240 836.6 851 55.3
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.5e-240 835.5 870 56.0
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 6.0e-240 834.7 870 55.7
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 5.1e-239 831.6 854 55.5
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 1.9e-238 829.7 866 55.7
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 1.9e-238 829.7 871 54.0
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 1.9e-238 829.7 879 54.7
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.5e-238 829.3 870 55.7
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.3e-238 828.9 879 55.4
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 4.0e-236 822.0 870 53.2
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.5e-235 820.1 881 55.1
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 2.9e-234 815.8 867 53.6
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 1.1e-233 813.9 861 53.9
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.1e-233 813.9 876 52.3
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.1e-233 813.9 872 53.8
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 1.1e-233 813.9 856 54.4
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 5.4e-233 811.6 824 55.6
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.6e-232 810.1 912 53.3
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 1.3e-231 807.0 869 53.7
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 2.3e-231 806.2 864 54.6
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 3.9e-231 805.4 875 52.2
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 6.6e-231 804.7 856 54.3
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 8.7e-231 804.3 836 54.7
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.1e-230 803.9 864 53.0
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.5e-230 803.5 855 52.9
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 1.5e-230 803.5 772 58.3
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 2.5e-230 802.7 859 53.6
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 3.3e-230 802.4 870 54.8
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 4.3e-230 802.0 870 53.9
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.1e-228 797.3 830 53.7
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.4e-228 797.0 873 53.4
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 2.0e-227 793.1 885 51.8
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 9.9e-227 790.8 882 53.3
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 4.9e-226 788.5 872 53.3
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 6.0e-224 781.6 883 51.8
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 1.0e-223 780.8 853 52.6
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 3.3e-222 775.8 879 52.7
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 5.6e-222 775.0 876 51.0
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 7.4e-222 774.6 841 53.4
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 9.6e-222 774.2 851 52.5
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 2.0e-219 766.5 876 51.5
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 4.5e-219 765.4 855 52.9
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 2.2e-218 763.1 842 51.4
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 3.8e-218 762.3 757 57.3
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 8.4e-218 761.1 858 51.5
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 5.5e-217 758.4 838 52.1
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 1.2e-216 757.3 737 57.9
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 2.7e-216 756.1 942 48.6
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 1.0e-215 754.2 826 52.8
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.3e-215 753.8 846 52.1
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 8.7e-215 751.1 884 51.6
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.9e-214 750.0 839 52.3
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 1.3e-213 747.3 873 51.1
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 6.2e-213 745.0 822 51.8
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 6.2e-213 745.0 828 52.5
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 1.1e-212 744.2 784 54.5
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 6.9e-212 741.5 966 47.9
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 2.6e-211 739.6 801 53.7
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 1.0e-210 737.6 861 51.1
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 2.2e-210 736.5 835 51.3
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 1.9e-209 733.4 845 51.2
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 5.1e-207 725.3 860 51.9
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.9e-206 723.4 838 50.8
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 3.3e-206 722.6 870 49.5
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 3.7e-205 719.2 693 58.0
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 3.1e-204 716.1 839 49.6
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.3e-202 710.7 668 57.9
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 2.1e-200 703.4 776 52.3
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.4e-196 690.6 900 47.2
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 2.0e-195 686.8 874 48.4
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 1.2e-192 677.6 712 53.5
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 1.6e-192 677.2 555 65.9
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 3.9e-191 672.5 784 50.5
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 5.3e-188 662.1 886 45.1
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 1.0e-186 657.9 833 45.9
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.5e-185 653.3 805 48.6
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 2.7e-184 649.8 841 47.3
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 1.1e-180 637.9 604 57.6
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 9.1e-180 634.8 854 46.8
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 2.6e-166 590.1 813 45.8
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 4.4e-166 589.3 845 44.6
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.1e-164 584.7 553 58.4
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 1.8e-156 557.4 917 40.6
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 2.0e-155 553.9 788 43.9
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 2.3e-151 540.4 452 65.3
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.2e-150 538.1 866 41.8
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.1e-148 531.6 781 44.2
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.6e-147 527.7 856 42.1
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 1.9e-145 520.8 1092 35.9
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 2.9e-141 506.9 722 44.2
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 7.0e-140 502.3 721 41.2
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 5.2e-127 459.5 573 48.3
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.4e-124 451.4 874 36.2
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 4.1e-124 449.9 557 47.8
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 2.1e-115 421.0 577 47.1
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 8.1e-104 382.5 628 38.4
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 2.6e-102 377.5 802 35.4
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 1.8e-98 364.8 553 41.8
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 2.5e-92 344.4 699 34.0
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.5e-89 335.1 428 47.2
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 4.6e-75 287.0 361 50.1
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 8.2e-72 276.2 363 49.9
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 8.2e-72 276.2 363 49.9
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 8.5e-69 266.2 363 46.8
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.5e-65 255.4 257 56.8
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.5e-60 238.8 282 50.4
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 5.5e-60 236.9 312 45.5
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-53 215.7 178 65.2
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-53 215.7 178 65.2
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 7.0e-47 193.4 195 57.9
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 9.8e-41 172.9 245 44.1
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 8.3e-40 169.9 190 54.7
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 5.0e-37 160.6 176 54.5
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-36 159.5 172 55.2
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 2.9e-32 144.8 138 54.3
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 6.4e-32 143.7 144 56.2
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 1.8e-26 125.6 141 55.3
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 6.4e-24 117.1 207 41.5
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 2.3e-21 108.6 368 27.7
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 1.1e-15 89.7 78 66.7
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 2.7e-14 85.1 105 48.6
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 6.6e-13 80.5 60 68.3
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 6.6e-13 80.5 104 39.4
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 4.7e-11 74.3 48 79.2
BolC2t11814H Brassica oleracea HOM05D004054 ORTHO05D004945 4.7e-11 74.3 126 43.7
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 4.7e-11 74.3 154 33.1
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 4.7e-11 74.3 219 25.1
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 1.8e-10 72.4 63 55.6
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 1.8e-10 72.4 58 58.6
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-08 64.7 47 63.8
C02p23800 Brassica napus HOM05D000787 ORTHO05D003730 6.4e-08 63.9 58 65.5
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 2.7e-06 58.5 85 43.5


User provided reference genes

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