Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 1.6e-60 235.7 108 100.0
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 1.1e-53 213.0 97 100.0
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 2.5e-53 211.8 101 94.1
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 3.3e-53 211.5 97 99.0
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 3.3e-53 211.5 97 99.0
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 3.3e-53 211.5 97 99.0
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 9.6e-53 209.9 97 97.9
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 2.1e-52 208.8 97 96.9
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 2.8e-52 208.4 97 96.9
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 3.7e-52 208.0 97 95.9
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 6.2e-52 207.2 97 95.9
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 8.1e-52 206.8 97 95.9
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 8.1e-52 206.8 97 95.9
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 8.1e-52 206.8 97 95.9
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 1.1e-51 206.5 97 95.9
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 2.4e-51 205.3 97 94.8
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 2.4e-51 205.3 97 94.8
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 2.4e-51 205.3 97 94.8
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 2.4e-51 205.3 97 94.8
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 4.0e-51 204.5 97 95.9
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 6.9e-51 203.8 97 93.8
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 6.9e-51 203.8 97 93.8
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 6.9e-51 203.8 97 94.8
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 9.0e-51 203.4 97 93.8
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 1.2e-50 203.0 97 93.8
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 1.5e-50 202.6 97 94.8
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 1.5e-50 202.6 97 94.8
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 1.5e-50 202.6 97 94.8
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 1.5e-50 202.6 97 94.8
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 1.5e-50 202.6 97 94.8
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 2.0e-50 202.2 97 93.8
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 2.0e-50 202.2 97 92.8
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 2.0e-50 202.2 97 92.8
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 9.9e-50 199.9 97 91.8
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 2.5e-45 185.3 97 83.5
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 2.5e-45 185.3 97 83.5
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 5.6e-45 184.1 97 84.5
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 5.6e-45 184.1 97 84.5
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 5.6e-45 184.1 97 85.6
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 7.4e-45 183.7 97 82.5
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 9.6e-45 183.3 97 85.6
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 9.6e-45 183.3 97 83.5
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 9.6e-45 183.3 97 82.5
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.3e-44 183.0 97 83.5
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.3e-44 183.0 97 83.5
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 1.3e-44 183.0 97 83.5
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.8e-44 181.8 97 82.5
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 2.8e-44 181.8 97 82.5
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 4.8e-44 181.0 97 80.4
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 4.8e-44 181.0 97 82.5
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 6.2e-44 180.6 97 84.5
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 8.2e-44 180.3 97 79.4
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 8.2e-44 180.3 97 78.4
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 1.1e-43 179.9 97 80.4
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 1.1e-43 179.9 99 80.8
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 1.4e-43 179.5 97 79.4
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 1.4e-43 179.5 97 78.4
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 1.4e-43 179.5 97 78.4
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 1.8e-43 179.1 97 81.4
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 1.8e-43 179.1 97 82.5
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.4e-43 178.7 97 81.4
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 2.4e-43 178.7 97 81.4
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 3.1e-43 178.3 97 78.4
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 3.1e-43 178.3 96 80.2
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 4.0e-43 177.9 97 82.5
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 5.3e-43 177.6 97 81.4
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 5.3e-43 177.6 97 81.4
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 5.3e-43 177.6 97 80.4
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 5.3e-43 177.6 97 80.4
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 5.3e-43 177.6 97 80.4
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 5.3e-43 177.6 97 80.4
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 5.3e-43 177.6 97 80.4
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 5.3e-43 177.6 97 80.4
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 5.3e-43 177.6 97 79.4
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 9.0e-43 176.8 97 83.5
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 1.5e-42 176.0 97 80.4
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 1.5e-42 176.0 97 81.4
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 2.0e-42 175.6 97 81.4
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 3.4e-42 174.9 96 81.2
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 3.4e-42 174.9 97 77.3
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 4.5e-42 174.5 97 79.4
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 5.8e-42 174.1 97 78.4
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 5.8e-42 174.1 97 80.4
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 7.6e-42 173.7 96 81.2
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 1.0e-41 173.3 97 79.4
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 1.0e-41 173.3 97 79.4
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 1.0e-41 173.3 96 80.2
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 1.3e-41 172.9 97 78.4
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 2.9e-41 171.8 96 78.1
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 3.8e-41 171.4 97 79.4
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.8e-41 171.4 97 79.4
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 4.9e-41 171.0 97 78.4
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 4.9e-41 171.0 97 80.4
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 4.9e-41 171.0 97 78.4
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 6.5e-41 170.6 97 77.3
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 6.5e-41 170.6 97 76.3
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 6.5e-41 170.6 97 76.3
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 6.5e-41 170.6 97 78.4
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 6.5e-41 170.6 97 79.4
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 6.5e-41 170.6 97 77.3
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 8.4e-41 170.2 97 79.4
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 1.1e-40 169.9 97 79.4
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 1.1e-40 169.9 97 79.4
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 1.1e-40 169.9 97 80.4
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 1.9e-40 169.1 97 76.3
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 2.5e-40 168.7 97 76.3
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 4.2e-40 167.9 95 76.8
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 5.5e-40 167.5 112 68.8
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 5.5e-40 167.5 97 78.4
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 5.5e-40 167.5 97 76.3
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 7.1e-40 167.2 97 77.3
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 1.2e-39 166.4 96 78.1
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 2.1e-39 165.6 97 76.3
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 2.1e-39 165.6 97 75.3
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 2.1e-39 165.6 97 75.3
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 2.7e-39 165.2 96 77.1
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 2.7e-39 165.2 97 74.2
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 3.5e-39 164.9 97 76.3
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 3.5e-39 164.9 97 76.3
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 6.0e-39 164.1 97 75.3
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 2.3e-38 162.2 97 76.3
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 1.5e-37 159.5 97 75.3
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 1.9e-37 159.1 97 74.2
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 2.5e-37 158.7 93 75.3
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 4.3e-37 157.9 112 66.1
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 5.7e-37 157.5 87 77.0
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 1.3e-36 156.4 93 71.0
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 2.2e-36 155.6 97 73.2
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 3.7e-36 154.8 97 73.2
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 4.8e-36 154.5 93 69.9
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 8.2e-36 153.7 97 72.2
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 1.4e-35 152.9 97 71.1
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.4e-35 152.9 94 71.3
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 7.2e-32 140.6 79 74.7
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 3.3e-29 131.7 85 71.8
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 8.2e-28 127.1 89 64.0
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.1e-27 126.7 92 60.9
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.8e-27 125.9 92 60.9
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 1.8e-27 125.9 68 79.4
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 6.9e-27 124.0 68 75.0
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 1.2e-26 123.2 84 66.7
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 1.4e-24 116.3 74 71.6
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 4.2e-24 114.8 74 64.9
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 4.7e-23 111.3 91 60.4
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 6.1e-23 110.9 72 68.1
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 6.7e-22 107.5 86 57.0
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 3.3e-21 105.1 70 67.1
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 1.7e-20 102.8 84 52.4
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 9.1e-19 97.1 97 49.5
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 4.5e-18 94.7 67 67.2
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 3.8e-17 91.7 49 73.5
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 5.0e-17 91.3 72 54.2
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 1.0e-14 83.6 54 70.4
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 4.1e-11 71.6 50 66.0
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 5.0e-09 64.7 37 78.4
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.9e-08 62.8 61 55.7
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 1.6e-07 59.7 70 41.4
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 2.3e-06 55.8 37 70.3


User provided reference genes

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