Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p35080 Brassica napus HOM05D007107 ORTHO05D009198 1.9e-50 202.2 101 100.0
BraA01t03589Z Brassica rapa HOM05D007107 ORTHO05D009198 1.9e-50 202.2 101 100.0
BcaC09g48926 Brassica carinata HOM05D007107 ORTHO05D009198 3.7e-46 188.0 101 92.1
C01p44500 Brassica napus HOM05D007107 ORTHO05D009198 3.7e-46 188.0 101 92.1
BolC1t04415H Brassica oleracea HOM05D007107 ORTHO05D009198 3.7e-46 188.0 101 92.1
BcaB04g20690 Brassica carinata HOM05D007107 ORTHO05D009198 1.8e-40 169.1 101 86.1
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 2.0e-36 155.6 101 78.2
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 2.5e-34 148.7 101 78.2
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 9.3e-34 146.7 101 78.2
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 2.3e-32 142.1 93 77.4
AT3G19615 Arabidopsis thaliana HOM05D007107 ORTHO05D009198 2.3e-32 142.1 93 77.4
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 1.9e-31 139.0 101 74.3
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 1.9e-31 139.0 101 74.3
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 1.9e-31 139.0 93 77.4
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 9.7e-31 136.7 105 72.4
BolC3t17339H Brassica oleracea HOM05D007107 ORTHO05D009198 8.2e-30 133.7 102 72.5
C05p45210 Brassica napus HOM05D007107 ORTHO05D009198 7.9e-25 117.1 90 70.0
BcaB04g19054 Brassica carinata HOM05D007107 ORTHO05D009198 2.3e-24 115.5 96 70.8
BcaB06g26031 Brassica carinata HOM05D007107 ORTHO05D009198 7.7e-20 100.5 98 62.2
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.5e-15 86.3 76 60.5
BcaC05g28441 Brassica carinata HOM05D007107 ORTHO05D009198 3.3e-15 85.1 68 69.1
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 6.3e-14 80.9 87 56.3
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 6.3e-14 80.9 87 56.3
THA.LOC104826494 Tarenaya hassleriana HOM05D007107 ORTHO05D009198 6.3e-14 80.9 91 52.7
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 1.8e-13 79.3 87 56.3
Aa31LG8G6390 Aethionema arabicum HOM05D007107 ORTHO05D009198 2.0e-12 75.9 81 53.1
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 2.0e-12 75.9 75 57.3
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 4.5e-12 74.7 72 56.9
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 5.9e-12 74.3 64 60.9
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 7.7e-12 73.9 72 56.9
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 1.3e-11 73.2 71 52.1
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 1.7e-11 72.8 95 45.3
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.9e-11 72.0 87 50.6
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 2.9e-11 72.0 87 50.6
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 3.8e-11 71.6 64 60.9
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 5.0e-11 71.2 95 44.2
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 6.5e-11 70.9 72 54.2
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 6.5e-11 70.9 87 50.6
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 1.5e-10 69.7 64 60.9
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 1.9e-10 69.3 99 47.5
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 2.5e-10 68.9 76 52.6
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 2.5e-10 68.9 69 50.7
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 2.5e-10 68.9 74 54.1
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 3.2e-10 68.6 91 44.0
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 4.2e-10 68.2 72 51.4
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 5.5e-10 67.8 90 46.7
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 7.2e-10 67.4 74 54.1
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 1.2e-09 66.6 91 47.3
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 1.2e-09 66.6 72 51.4
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 1.6e-09 66.2 62 58.1
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 2.1e-09 65.9 92 45.7
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 2.1e-09 65.9 92 45.7
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 2.7e-09 65.5 86 45.3
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 2.7e-09 65.5 104 42.3
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 3.6e-09 65.1 72 50.0
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 3.6e-09 65.1 72 50.0
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 3.6e-09 65.1 64 53.1
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 3.6e-09 65.1 92 46.7
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 6.1e-09 64.3 64 54.7
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 6.1e-09 64.3 86 47.7
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 8.0e-09 63.9 72 48.6
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 1.0e-08 63.5 89 47.2
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 1.8e-08 62.8 84 50.0
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 2.3e-08 62.4 73 49.3
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 3.0e-08 62.0 73 50.7
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 3.0e-08 62.0 64 56.2
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 3.0e-08 62.0 64 56.2
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 3.0e-08 62.0 92 46.7
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 3.0e-08 62.0 76 51.3
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 5.2e-08 61.2 84 48.8
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 8.8e-08 60.5 94 41.5
Sed0004586 Sechium edule HOM05D007107 ORTHO05D009198 1.1e-07 60.1 105 41.9
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 1.5e-07 59.7 90 47.8
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 2.0e-07 59.3 73 49.3
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 2.6e-07 58.9 78 44.9
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 4.4e-07 58.2 76 44.7
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 4.4e-07 58.2 64 50.0
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 5.7e-07 57.8 67 47.8
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 1.3e-06 56.6 69 49.3
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 1.7e-06 56.2 74 48.6
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 2.2e-06 55.8 64 51.6
PGSC0003DMG400025747 Solanum tuberosum HOM05D007107 ORTHO05D009198 2.2e-06 55.8 82 40.2
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 6.3e-06 54.3 72 44.4
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 6.3e-06 54.3 98 42.9
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 8.2e-06 53.9 65 50.8


User provided reference genes

Program Settings