Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 2170.2 1103 100.0
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 0.0e+00 2125.9 1103 97.7
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 0.0e+00 2078.9 1105 95.8
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 2075.4 1105 95.7
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 0.0e+00 1871.7 1119 86.3
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 0.0e+00 1860.1 1115 85.4
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 0.0e+00 1845.9 1113 84.5
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 0.0e+00 1838.9 1116 84.9
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 0.0e+00 1836.2 1116 84.1
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 0.0e+00 1827.8 1113 83.7
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 0.0e+00 1790.8 1104 85.4
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 0.0e+00 1701.8 1107 78.9
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 0.0e+00 1519.6 1121 70.7
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1213.7 1133 57.6
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1212.6 1128 56.4
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1211.8 1132 56.4
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1202.6 1133 56.3
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1200.3 1128 56.1
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1198.3 1131 55.1
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1191.8 1147 56.3
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1188.3 1123 56.5
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1186.0 1124 56.0
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1182.2 1122 56.2
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1165.2 1146 54.6
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1162.5 1137 55.3
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1159.1 1136 54.7
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1149.8 1132 54.5
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1149.4 1129 54.7
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1149.4 1130 54.0
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1147.5 1126 53.7
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1145.6 1131 54.3
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1143.6 1128 54.6
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1143.3 1126 54.1
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1143.3 1138 54.0
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1141.7 1140 54.0
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1140.6 1142 53.0
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1140.2 1140 52.5
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1138.3 1134 54.1
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1137.1 1132 54.2
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1132.5 1146 52.8
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1131.3 1132 54.0
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1131.3 1123 53.5
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1130.9 1132 54.0
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1122.1 1138 53.6
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1120.1 1137 53.9
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1116.3 1124 54.2
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1112.1 1125 53.1
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1111.7 1143 51.4
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1111.3 1139 53.3
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1107.4 1127 53.9
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1102.4 1129 53.8
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1100.1 1137 53.3
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1098.2 1144 50.7
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1096.3 1138 52.2
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1094.0 1133 52.1
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1093.2 1143 51.6
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1088.2 1126 52.2
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1087.8 1177 51.2
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1082.8 1140 51.5
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1082.8 1143 51.3
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1080.9 1136 51.1
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1077.8 1132 52.1
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 7.5e-312 1073.9 1134 51.7
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 3.0e-311 1072.0 1141 50.8
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 3.8e-311 1071.6 1128 51.0
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 4.4e-310 1068.1 1143 50.4
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 4.4e-310 1068.1 1144 50.5
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 8.2e-309 1063.9 1146 50.4
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 1.2e-307 1060.1 1136 51.3
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 7.7e-307 1057.4 1130 50.7
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 1.8e-303 1046.2 1142 49.8
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 4.8e-301 1038.1 1086 51.3
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 4.8e-301 1038.1 1136 49.9
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 6.3e-301 1037.7 1145 49.3
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 7.0e-300 1034.2 1152 49.2
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 1.8e-295 1019.6 1018 52.4
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 5.7e-294 1014.6 1140 47.9
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 1.4e-292 1010.0 1096 50.7
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 6.6e-290 1001.1 1140 48.1
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 3.3e-289 998.8 1124 50.5
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 2.1e-288 996.1 1137 48.9
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 2.8e-288 995.7 1133 47.7
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 2.3e-282 976.1 1147 47.9
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 4.7e-280 968.4 1022 50.9
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 3.4e-278 962.2 1131 47.3
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 9.8e-278 960.7 1157 47.3
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 1.3e-274 950.3 1184 47.0
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-269 933.7 1144 46.8
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 4.3e-265 918.7 1117 46.7
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 5.6e-265 918.3 1135 46.5
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 1.6e-235 820.5 904 50.0
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 9.3e-228 794.7 1131 43.1
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 7.4e-217 758.4 774 51.7
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 5.5e-212 742.3 1136 39.0
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 3.8e-205 719.5 1218 37.8
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 2.7e-203 713.4 650 56.8
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 1.8e-199 700.7 659 55.1
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 7.7e-198 695.3 1217 36.9
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 1.7e-197 694.1 1160 39.2
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 1.2e-182 644.8 652 52.1
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 1.2e-179 634.8 653 52.5
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 2.6e-177 627.1 656 50.0
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 2.4e-175 620.5 597 55.9
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 3.5e-166 590.1 568 54.9
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 3.4e-161 573.5 571 54.8
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 1.5e-156 558.1 644 48.0
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 3.9e-149 533.5 716 45.1
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 7.1e-135 486.1 512 50.0
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 4.3e-132 476.9 473 54.8
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 1.3e-128 465.3 472 53.8
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 3.2e-127 460.7 462 54.1
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 3.6e-86 324.3 1591 24.3
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 6.3e-75 287.0 500 37.6
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 3.1e-66 258.1 723 33.2
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 1.7e-64 252.3 550 32.0
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.7e-64 252.3 247 52.6
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 5.9e-57 227.3 554 31.4
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 3.3e-55 221.5 384 40.1
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-49 203.0 472 30.1
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 5.2e-45 187.6 554 28.5
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 4.3e-39 167.9 498 27.9
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 5.2e-37 161.0 367 34.1
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-36 158.7 206 42.2
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 9.9e-36 156.8 207 46.9
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-33 149.4 245 36.3
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 3.5e-33 148.3 664 25.2
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 3.5e-33 148.3 664 25.2
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 4.0e-29 134.8 210 42.4
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-28 132.1 120 54.2
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-28 132.1 174 42.0
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 4.9e-27 127.9 150 46.7
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-26 125.9 148 45.9
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 6.2e-22 110.9 91 53.8
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 4.6e-17 94.7 147 37.4
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 6.6e-16 90.9 204 31.4
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 6.6e-16 90.9 204 31.4
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 1.6e-14 86.3 143 35.7
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 2.1e-14 85.9 53 69.8
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 6.2e-14 84.3 79 53.2
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-12 79.0 58 60.3
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 2.9e-11 75.5 113 40.7
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 6.4e-11 74.3 58 53.4
SHI52879 Sapria himalayana HOM05D004911 ORTHO05D005930 1.0e-08 67.0 151 34.4
Haze_13501 Corylus avellana HOM05D004911 ORTHO05D005930 5.6e-07 61.2 68 48.5
SHI47080 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-06 60.1 80 38.8
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 2.8e-06 58.9 87 35.6


User provided reference genes

Program Settings