Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 1.4e-187 659.4 339 100.0
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 1.2e-186 656.4 339 99.4
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 1.5e-173 612.8 340 93.5
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 4.5e-173 611.3 340 93.2
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 4.5e-173 611.3 340 93.2
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 2.0e-160 569.3 342 87.4
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 8.2e-159 563.9 345 88.1
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 7.2e-155 550.8 342 84.8
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 1.2e-152 543.5 340 82.6
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 4.4e-152 541.6 341 82.7
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 6.8e-145 517.7 341 80.4
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 4.7e-138 495.0 343 78.1
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 2.0e-125 453.0 344 72.4
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 4.4e-112 408.7 349 66.5
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 1.2e-98 364.0 349 60.5
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 2.8e-98 362.8 349 60.2
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 1.7e-95 353.6 348 59.2
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 5.4e-94 348.6 349 56.4
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 9.3e-94 347.8 344 57.3
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 1.2e-93 347.4 344 57.3
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 4.6e-93 345.5 353 57.2
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 6.6e-92 341.7 350 58.9
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 2.5e-91 339.7 343 58.9
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 3.3e-91 339.3 285 64.9
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 5.6e-91 338.6 350 56.3
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 1.6e-90 337.0 345 56.8
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 2.8e-90 336.3 347 57.1
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 1.8e-89 333.6 345 57.1
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 2.4e-89 333.2 342 57.6
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 3.1e-89 332.8 343 56.3
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 4.0e-89 332.4 345 55.9
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 4.0e-89 332.4 343 57.1
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 5.3e-89 332.0 343 56.3
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 5.3e-89 332.0 346 56.9
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 6.9e-89 331.6 289 62.3
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 6.9e-89 331.6 346 56.6
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 9.0e-89 331.3 343 55.7
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 1.5e-88 330.5 345 55.7
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 4.5e-88 328.9 342 56.4
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 4.5e-88 328.9 352 54.8
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 5.8e-88 328.6 355 54.1
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 5.8e-88 328.6 355 54.1
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 5.8e-88 328.6 275 65.8
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 9.9e-88 327.8 360 53.3
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 9.9e-88 327.8 351 54.7
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 1.3e-87 327.4 338 58.9
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 1.3e-87 327.4 348 56.9
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 1.3e-87 327.4 350 54.6
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 2.9e-87 326.2 349 55.6
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 3.8e-87 325.9 342 55.8
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 3.8e-87 325.9 353 55.8
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 8.4e-87 324.7 282 62.4
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 8.4e-87 324.7 341 56.3
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 8.4e-87 324.7 353 55.2
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 9.3e-86 321.2 345 55.9
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 1.2e-85 320.9 350 54.3
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 2.7e-85 319.7 347 54.2
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 8.7e-84 314.7 347 53.9
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 1.9e-83 313.5 283 60.4
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 3.3e-83 312.8 277 62.1
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 4.3e-83 312.4 324 55.6
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 9.6e-83 311.2 342 52.6
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 1.3e-82 310.8 345 52.8
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 2.8e-82 309.7 339 56.6
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 3.7e-82 309.3 278 60.4
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 6.2e-82 308.5 356 52.5
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 3.1e-81 306.2 347 53.6
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 5.3e-81 305.4 332 52.1
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 1.5e-80 303.9 355 51.8
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 7.6e-80 301.6 345 52.5
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 9.9e-80 301.2 349 53.6
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 9.9e-80 301.2 345 54.2
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 3.8e-79 299.3 349 52.1
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 8.4e-79 298.1 344 53.8
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 1.1e-78 297.7 359 50.7
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 1.6e-77 293.9 348 50.3
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 2.1e-77 293.5 350 51.7
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 4.6e-77 292.4 341 52.8
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 6.0e-77 292.0 344 52.9
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 3.9e-76 289.3 350 50.0
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 8.7e-76 288.1 354 47.7
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 1.1e-75 287.7 320 52.8
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 9.6e-75 284.6 339 49.6
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 6.2e-74 282.0 278 52.5
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 6.9e-73 278.5 303 53.8
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 1.0e-68 264.6 277 55.2
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 1.5e-64 250.8 302 51.7
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 7.7e-64 248.4 129 96.1
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 2.5e-62 243.4 324 47.5
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 2.1e-61 240.4 255 58.4
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 1.3e-58 231.1 280 47.1
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 3.7e-58 229.6 351 40.2
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 4.1e-57 226.1 233 60.5
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 2.6e-56 223.4 208 59.1
FAN21G2436 Fragaria x ananassa HOM05D007317 ORTHO05D009299 5.2e-44 182.6 135 66.7
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 2.6e-40 170.2 186 52.7
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 5.9e-40 169.1 270 36.3
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 1.8e-36 157.5 208 51.4
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 1.2e-35 154.8 102 75.5
PGSC0003DMG400016049 Solanum tuberosum HOM05D007317 ORTHO05D009299 4.1e-33 146.4 123 61.0
Pp3c9_12310 Physcomitrium patens HOM05D007317 ORTHO05D009299 4.1e-25 119.8 279 34.1
Mapoly0015s0049 Marchantia polymorpha HOM05D007317 ORTHO05D009299 7.7e-24 115.5 296 31.8
Dinv32111 Davidia involucrata HOM05D007317 ORTHO05D009299 5.5e-22 109.4 116 54.3
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 3.4e-19 100.1 302 28.1
MD03G1212500 Malus domestica HOM05D007317 ORTHO05D009299 5.9e-16 89.4 105 52.4
MCO11G003 Micromonas commoda HOM05D007317 ORTHO05D009299 8.6e-15 85.5 284 27.1
Cre08.g369000 Chlamydomonas reinhardtii HOM05D007317 ORTHO05D009299 2.9e-10 70.5 325 26.2


User provided reference genes

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