Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 1.2e-247 859.4 429 100.0
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 2.4e-232 808.5 413 98.1
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 3.0e-222 775.0 409 95.8
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 5.1e-222 774.2 414 94.2
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 5.8e-218 760.8 410 92.9
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 3.8e-217 758.1 416 92.3
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 1.4e-216 756.1 413 92.0
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 1.2e-215 753.1 416 92.1
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 1.2e-215 753.1 418 91.9
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 3.5e-215 751.5 413 91.8
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 7.3e-213 743.8 415 91.1
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 3.2e-208 728.4 414 89.6
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 1.2e-207 726.5 368 97.6
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 1.6e-207 726.1 368 97.6
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 3.9e-206 721.5 395 91.6
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 4.3e-205 718.0 414 87.7
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 3.9e-198 694.9 413 86.4
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 3.3e-197 691.8 420 85.5
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 6.5e-193 677.6 413 84.7
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 6.5e-193 677.6 409 82.9
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 2.5e-189 665.6 356 91.9
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 2.6e-170 602.4 407 73.7
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 2.7e-167 592.4 406 71.7
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.7e-167 592.4 409 72.4
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 3.6e-167 592.0 409 72.1
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 8.0e-167 590.9 428 69.2
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 1.4e-166 590.1 419 71.1
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 4.4e-165 585.1 298 94.3
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 2.8e-164 582.4 405 70.4
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 4.8e-164 581.6 410 72.4
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 4.8e-164 581.6 410 72.4
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 4.8e-164 581.6 406 70.0
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.1e-163 580.5 413 71.2
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 1.4e-163 580.1 406 69.7
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 1.2e-162 577.0 409 70.7
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 2.0e-162 576.2 443 65.5
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 2.6e-162 575.9 370 75.4
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 2.9e-161 572.4 397 71.0
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 4.2e-160 568.5 408 69.6
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 1.6e-159 566.6 397 70.3
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 1.4e-158 563.5 430 66.5
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 5.2e-158 561.6 370 73.2
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 6.7e-158 561.2 412 68.9
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 8.8e-158 560.8 346 77.7
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 9.7e-157 557.4 372 72.3
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 9.7e-157 557.4 372 72.8
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 2.2e-156 556.2 376 73.1
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.7e-156 555.4 407 68.3
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 4.8e-156 555.1 407 68.3
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 4.8e-156 555.1 406 68.2
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 4.8e-156 555.1 344 77.0
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 1.4e-155 553.5 408 66.7
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.4e-155 553.5 393 69.7
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 1.8e-155 553.1 397 68.5
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 1.8e-155 553.1 396 70.5
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 1.8e-155 553.1 396 67.9
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 2.4e-155 552.7 371 72.2
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 7.0e-155 551.2 353 74.5
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 9.1e-155 550.8 411 66.7
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 9.1e-155 550.8 358 73.7
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 1.2e-154 550.4 380 70.8
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 1.6e-154 550.1 402 68.7
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 2.0e-154 549.7 356 72.8
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 2.0e-154 549.7 341 76.8
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 4.5e-154 548.5 337 76.3
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 7.7e-154 547.7 408 66.7
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 1.3e-153 547.0 399 67.9
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 1.3e-153 547.0 376 70.2
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 1.7e-153 546.6 406 68.0
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.7e-153 546.6 363 73.3
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 2.2e-153 546.2 395 73.2
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 2.9e-153 545.8 396 67.2
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 3.8e-153 545.4 395 67.8
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 6.5e-153 544.7 341 76.2
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 6.5e-153 544.7 340 74.7
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 6.5e-153 544.7 340 75.9
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 8.5e-153 544.3 395 67.8
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.1e-152 543.9 396 67.2
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 1.1e-152 543.9 360 73.1
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 1.5e-152 543.5 367 71.4
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 1.5e-152 543.5 357 73.4
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 1.9e-152 543.1 350 74.3
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 2.5e-152 542.7 372 72.3
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 4.2e-152 542.0 333 76.3
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 7.2e-152 541.2 341 75.4
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 7.2e-152 541.2 332 77.1
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 9.4e-152 540.8 348 74.1
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 9.4e-152 540.8 434 64.1
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 9.4e-152 540.8 333 76.0
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 2.1e-151 539.7 346 75.1
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 2.1e-151 539.7 360 71.1
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 6.1e-151 538.1 347 74.4
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 6.1e-151 538.1 368 73.1
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 1.0e-150 537.3 406 65.5
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-150 537.0 363 70.5
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 1.4e-150 537.0 349 73.1
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 1.4e-150 537.0 347 73.8
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 1.8e-150 536.6 426 62.9
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 2.3e-150 536.2 346 72.3
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 2.3e-150 536.2 333 75.4
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 3.0e-150 535.8 341 73.9
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-149 533.9 341 73.6
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 7.5e-149 531.2 413 67.6
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 7.5e-149 531.2 413 67.6
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 2.8e-148 529.3 406 65.5
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 2.8e-148 529.3 333 73.3
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 1.4e-147 526.9 339 72.9
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 1.8e-147 526.6 413 67.1
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 5.4e-147 525.0 347 72.0
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 1.0e-145 520.8 327 74.0
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 1.3e-145 520.4 336 74.7
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 2.9e-145 519.2 334 72.2
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 9.5e-144 514.2 327 73.1
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 1.2e-143 513.8 297 82.2
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 6.1e-143 511.5 337 72.1
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 5.2e-142 508.4 400 64.2
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 2.8e-140 502.7 311 76.8
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 8.3e-140 501.1 380 63.7
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 6.6e-137 491.5 404 59.4
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 2.3e-134 483.0 356 66.9
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 8.9e-134 481.1 336 66.7
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 1.2e-133 480.7 283 79.9
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 4.6e-130 468.8 324 69.1
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 4.9e-124 448.7 277 74.7
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 3.2e-123 446.0 337 66.8
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.7e-121 440.3 339 62.8
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 9.9e-117 424.5 438 55.0
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 6.6e-113 411.8 329 59.6
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 2.0e-109 400.2 335 58.5
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 3.8e-108 396.0 319 61.1
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 7.8e-106 388.3 262 72.1
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 5.1e-105 385.6 336 62.2
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 1.9e-99 367.1 292 59.9
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 4.5e-93 345.9 326 56.4
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 1.5e-85 320.9 268 63.8
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.4e-83 314.3 188 79.3
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 9.0e-78 295.0 186 74.7
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 2.2e-76 290.4 344 47.4
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 1.0e-73 281.6 143 93.0
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.9e-68 263.5 157 79.0
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 1.6e-66 257.7 159 74.2
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 1.3e-63 248.1 275 49.8
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 8.8e-57 225.3 309 43.0
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 7.7e-53 212.2 236 50.0
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 7.4e-48 195.7 209 50.7
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 6.1e-42 176.0 131 64.9
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 1.4e-41 174.9 116 69.8
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 2.3e-41 174.1 272 39.0
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 8.8e-41 172.2 137 64.2
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 3.5e-37 160.2 137 62.0
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 3.5e-37 160.2 137 62.0
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-36 158.7 148 58.1
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 7.0e-30 136.0 231 37.7
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-27 128.3 159 46.5
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-27 128.3 159 46.5
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 7.3e-19 99.4 173 35.8
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 6.2e-18 96.3 53 75.5
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 6.2e-18 96.3 53 75.5
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 9.5e-11 72.4 51 66.7
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-06 58.2 39 64.1
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 3.2e-06 57.4 45 57.8


User provided reference genes

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