Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p33430 Brassica napus HOM05D003422 ORTHO05D015898 4.4e-55 218.0 136 100.0
BolC1t04226H Brassica oleracea HOM05D003422 ORTHO05D028074 3.5e-36 155.2 110 93.6
C01p42710 Brassica napus HOM05D003422 ORTHO05D028074 8.7e-35 150.6 106 95.3
A01p33410 Brassica napus HOM05D003422 ORTHO05D028074 2.5e-34 149.1 84 100.0
BraA01t03464Z Brassica rapa HOM05D003422 ORTHO05D028074 2.5e-34 149.1 84 100.0
BcaC09g49085 Brassica carinata HOM05D001456 ORTHO05D015898 3.4e-31 138.7 83 95.2
BcaC09g49229 Brassica carinata HOM05D003422 ORTHO05D004263 7.4e-18 94.4 89 67.4
A01p32170 Brassica napus HOM05D003422 ORTHO05D004263 1.8e-16 89.7 86 66.3
BraA01t03342Z Brassica rapa HOM05D003422 ORTHO05D004263 2.2e-14 82.8 92 62.0
SpUn0343_0020 Schrenkiella parvula HOM05D003422 ORTHO05D004263 5.5e-13 78.2 97 60.8
A07p31020 Brassica napus HOM05D003422 ORTHO05D004263 7.2e-13 77.8 90 62.2
BcaC03g15214 Brassica carinata HOM05D003422 ORTHO05D004263 1.6e-12 76.6 90 62.2
C02p28010 Brassica napus HOM05D003422 ORTHO05D004263 1.6e-12 76.6 90 62.2
BolC2t08844H Brassica oleracea HOM05D003422 ORTHO05D004263 1.6e-12 76.6 90 62.2
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 2.1e-12 76.3 78 66.7
BcaB03g15550 Brassica carinata HOM05D003422 ORTHO05D004263 3.6e-12 75.5 90 61.1
BcaC08g45809 Brassica carinata HOM05D003422 ORTHO05D004263 3.6e-12 75.5 90 61.1
C06p36020 Brassica napus HOM05D003422 ORTHO05D004263 3.6e-12 75.5 90 61.1
BolC6t38723H Brassica oleracea HOM05D003422 ORTHO05D004263 3.6e-12 75.5 90 61.1
BcaB05g24600 Brassica carinata HOM05D003422 ORTHO05D004263 4.7e-12 75.1 90 61.1
Sp5g25830 Schrenkiella parvula HOM05D003422 ORTHO05D004263 7.9e-12 74.3 90 60.0
Thhalv10008312m.g Eutrema salsugineum HOM05D003422 ORTHO05D004263 1.0e-11 73.9 81 64.2
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 2.3e-11 72.8 90 60.0
AL1G31870 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 1.1e-10 70.5 101 56.4
Carub.0001s2287 Capsella rubella HOM05D003422 ORTHO05D004263 2.6e-10 69.3 79 65.8
CARHR023720 Cardamine hirsuta HOM05D003422 ORTHO05D004263 7.4e-10 67.8 81 61.7
A02p16750 Brassica napus HOM05D003422 ORTHO05D004263 9.7e-10 67.4 90 57.8
RcHm_v2.0_Chr7g0190541 Rosa chinensis HOM05D003422 ORTHO05D004263 9.7e-10 67.4 91 54.9
AL1G37060 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 1.3e-09 67.0 101 54.5
TAR622G0502 Trochodendron aralioides HOM05D003422 ORTHO05D004263 2.8e-09 65.9 77 59.7
Atru.chr2.1587 Acer truncatum HOM05D003422 ORTHO05D004263 3.7e-09 65.5 77 59.7
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 3.7e-09 65.5 77 59.7
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 3.7e-09 65.5 77 59.7
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 3.7e-09 65.5 77 59.7
A03p43080 Brassica napus HOM05D003422 ORTHO05D004263 3.7e-09 65.5 88 56.8
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 3.7e-09 65.5 77 59.7
SEGI_07600 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 3.7e-09 65.5 86 58.1
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 4.8e-09 65.1 78 60.3
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 4.8e-09 65.1 75 58.7
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 6.3e-09 64.7 74 63.5
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 6.3e-09 64.7 77 59.7
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 6.3e-09 64.7 78 56.4
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 6.3e-09 64.7 78 56.4
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 6.3e-09 64.7 78 56.4
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 6.3e-09 64.7 111 45.0
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 8.2e-09 64.3 78 56.4
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 8.2e-09 64.3 84 54.8
BcaC01g03409 Brassica carinata HOM05D003422 ORTHO05D004263 1.4e-08 63.5 90 50.0
C03p52870 Brassica napus HOM05D003422 ORTHO05D004263 1.4e-08 63.5 90 50.0
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 1.4e-08 63.5 78 56.4
FAN06G1621 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.4e-08 62.8 60 65.0
Lsat_1_v5_gn_5_166341 Lactuca sativa HOM05D003422 ORTHO05D004263 2.4e-08 62.8 60 66.7
VMungo1127G0899 Vigna mungo HOM05D003422 ORTHO05D004263 2.4e-08 62.8 61 63.9
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 3.1e-08 62.4 61 63.9
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 3.1e-08 62.4 61 63.9
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 3.1e-08 62.4 79 58.2
Lsat_1_v5_gn_8_152261 Lactuca sativa HOM05D003422 ORTHO05D004263 3.1e-08 62.4 60 66.7
BolC3t17554H Brassica oleracea HOM05D003422 ORTHO05D004263 4.1e-08 62.0 95 52.6
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 4.1e-08 62.0 81 54.3
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 4.1e-08 62.0 81 54.3
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 5.3e-08 61.6 77 59.7
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 5.3e-08 61.6 84 52.4
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 5.3e-08 61.6 84 52.4
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 5.3e-08 61.6 84 52.4
arahy.Tifrunner.gnm1.ann1.I3QT17 Arachis hypogaea HOM05D003422 ORTHO05D004263 7.0e-08 61.2 61 62.3
BcaB04g17046 Brassica carinata HOM05D003422 ORTHO05D004263 7.0e-08 61.2 57 68.4
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 7.0e-08 61.2 77 55.8
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 7.0e-08 61.2 77 55.8
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 9.1e-08 60.8 81 53.1
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 9.1e-08 60.8 81 54.3
BcaC09g49228 Brassica carinata HOM05D003422 ORTHO05D031903 1.2e-07 60.5 56 64.3
HanXRQChr06g0172831 Helianthus annuus HOM05D003422 ORTHO05D004263 1.2e-07 60.5 78 55.1
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 1.2e-07 60.5 91 51.6
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 1.2e-07 60.5 84 52.4
TPR.G28314 Trifolium pratense HOM05D003422 ORTHO05D004263 1.2e-07 60.5 61 60.7
BraA03t13450Z Brassica rapa HOM05D003422 ORTHO05D004263 1.5e-07 60.1 91 54.9
Migut.E00204 Erythranthe guttata HOM05D003422 ORTHO05D004263 2.0e-07 59.7 61 63.9
Pp3c2_4220 Physcomitrium patens HOM05D003422 ORTHO05D004263 2.0e-07 59.7 79 55.7
Ah.04g165080 Amaranthus hybridus HOM05D002611 ORTHO05D002822 2.6e-07 59.3 77 54.5
Mapoly0061s0104 Marchantia polymorpha HOM05D003422 ORTHO05D004263 2.6e-07 59.3 79 53.2
PSO017G4826 Papaver somniferum HOM05D003422 ORTHO05D004263 2.6e-07 59.3 93 55.9
PSO478G1628 Papaver somniferum HOM05D003422 ORTHO05D004263 2.6e-07 59.3 93 55.9
PSO017G5618 Papaver somniferum HOM05D003422 ORTHO05D004263 4.5e-07 58.5 84 53.6
THA.LOC104822989 Tarenaya hassleriana HOM05D003422 ORTHO05D004263 4.5e-07 58.5 78 55.1
ATR0824G091 Amborella trichopoda HOM05D003422 ORTHO05D004263 5.9e-07 58.2 72 58.3
TPR.G37166 Trifolium pratense HOM05D003422 ORTHO05D004263 7.7e-07 57.8 61 60.7
BcaB01g03637 Brassica carinata HOM05D003422 ORTHO05D004263 1.0e-06 57.4 57 64.9
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 1.0e-06 57.4 78 55.1
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 1.0e-06 57.4 78 55.1
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 1.0e-06 57.4 78 55.1
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 1.7e-06 56.6 78 53.8
Ciclev10032237m.g Citrus clementina HOM05D003422 ORTHO05D004263 1.7e-06 56.6 77 54.5
TAR374G1409 Trochodendron aralioides HOM05D003422 ORTHO05D004263 1.7e-06 56.6 77 54.5
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 2.2e-06 56.2 77 53.2
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 2.9e-06 55.8 78 55.1
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 3.8e-06 55.5 78 53.8
FAN10G4221 Fragaria x ananassa HOM05D003422 ORTHO05D004263 5.0e-06 55.1 65 56.9


User provided reference genes

Program Settings