Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 2.8e-34 147.9 68 100.0
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 1.4e-33 145.6 68 98.5
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 9.7e-27 122.9 57 98.2
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 9.7e-27 122.9 57 98.2
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 7.0e-25 116.7 57 91.2
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 7.0e-25 116.7 57 91.2
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 2.0e-24 115.2 57 91.2
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 3.5e-24 114.4 57 89.5
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 1.7e-23 112.1 57 89.5
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 6.5e-23 110.2 57 86.0
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 6.5e-23 110.2 57 86.0
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 6.5e-23 110.2 57 86.0
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 6.5e-23 110.2 57 86.0
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 6.5e-23 110.2 58 84.5
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 2.5e-22 108.2 62 77.4
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 2.5e-22 108.2 62 79.0
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 2.5e-22 108.2 62 75.8
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 4.2e-22 107.5 60 81.7
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 5.5e-22 107.1 55 85.5
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 5.5e-22 107.1 57 87.7
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 5.5e-22 107.1 62 77.4
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 1.2e-21 105.9 62 75.8
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.2e-21 105.9 63 74.6
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 1.6e-21 105.5 55 83.6
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 1.6e-21 105.5 62 75.8
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 1.6e-21 105.5 62 77.4
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 1.6e-21 105.5 62 77.4
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 2.7e-21 104.8 62 77.4
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 6.1e-21 103.6 64 75.0
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 6.1e-21 103.6 62 77.4
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 6.1e-21 103.6 62 77.4
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 1.0e-20 102.8 59 79.7
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 1.0e-20 102.8 62 74.2
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 1.0e-20 102.8 62 74.2
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 1.8e-20 102.1 59 78.0
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 1.8e-20 102.1 55 81.8
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 2.3e-20 101.7 62 72.6
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 2.3e-20 101.7 60 75.0
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 3.0e-20 101.3 62 75.8
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 4.0e-20 100.9 62 74.2
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 4.0e-20 100.9 62 74.2
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 4.0e-20 100.9 54 83.3
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 4.0e-20 100.9 59 78.0
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 6.8e-20 100.1 59 81.4
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 6.8e-20 100.1 62 72.6
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.2e-19 99.4 65 69.2
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 2.0e-19 98.6 59 74.6
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 2.0e-19 98.6 54 81.5
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 2.6e-19 98.2 62 71.0
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 3.4e-19 97.8 54 81.5
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 4.4e-19 97.4 63 73.0
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 4.4e-19 97.4 54 81.5
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 4.4e-19 97.4 54 81.5
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 5.7e-19 97.1 54 77.8
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 5.7e-19 97.1 62 69.4
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 7.5e-19 96.7 60 71.7
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 7.5e-19 96.7 65 70.8
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 9.7e-19 96.3 53 83.0
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 9.7e-19 96.3 57 73.7
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 9.7e-19 96.3 64 71.9
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 1.3e-18 95.9 57 75.4
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 1.7e-18 95.5 59 72.9
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 1.7e-18 95.5 59 72.9
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 1.7e-18 95.5 59 74.6
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 2.2e-18 95.1 62 69.4
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 2.8e-18 94.7 63 71.4
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 2.8e-18 94.7 53 79.2
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 4.8e-18 94.0 60 71.7
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 8.3e-18 93.2 54 75.9
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 8.3e-18 93.2 55 74.5
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 8.3e-18 93.2 62 67.7
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 8.3e-18 93.2 55 76.4
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 1.1e-17 92.8 62 67.7
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.8e-17 92.0 54 79.6
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 2.4e-17 91.7 54 79.6
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 4.1e-17 90.9 60 71.7
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 4.1e-17 90.9 53 73.6
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 5.3e-17 90.5 56 71.4
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 5.3e-17 90.5 53 77.4
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 5.3e-17 90.5 54 74.1
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 7.0e-17 90.1 53 75.5
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 7.0e-17 90.1 53 77.4
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 7.0e-17 90.1 54 70.4
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 9.1e-17 89.7 54 72.2
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 1.6e-16 89.0 53 75.5
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 1.6e-16 89.0 59 66.1
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.0e-16 88.6 51 78.4
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.0e-16 88.6 51 78.4
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.0e-16 88.6 51 78.4
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 2.7e-16 88.2 43 90.7
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 4.5e-16 87.4 53 73.6
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 4.5e-16 87.4 53 73.6
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 4.5e-16 87.4 59 69.5
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 5.9e-16 87.0 61 65.6
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 5.9e-16 87.0 73 54.8
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.3e-15 85.9 54 74.1
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.3e-15 85.9 54 74.1
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.3e-15 85.9 54 74.1
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 1.3e-15 85.9 53 71.7
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 2.2e-15 85.1 63 58.7
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 2.9e-15 84.7 53 69.8
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 3.8e-15 84.3 56 64.3
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 5.0e-15 84.0 61 63.9
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 8.5e-15 83.2 52 71.2
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 3.2e-14 81.3 55 67.3
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 7.2e-14 80.1 53 66.0
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 7.2e-14 80.1 53 67.9
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 9.4e-14 79.7 66 59.1
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.2e-13 79.3 58 67.2
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 1.2e-13 79.3 63 61.9
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.6e-13 79.0 63 55.6
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 2.1e-13 78.6 53 66.0
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.1e-13 78.6 63 55.6
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 6.1e-13 77.0 54 64.8
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 8.0e-13 76.6 55 65.5
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.0e-12 76.3 54 68.5
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 1.4e-12 75.9 53 60.4
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 2.3e-12 75.1 61 59.0
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 6.8e-12 73.6 54 59.3
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 2.0e-11 72.0 58 56.9
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 2.6e-11 71.6 55 63.6
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 2.8e-10 68.2 55 61.8
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 6.3e-10 67.0 54 59.3
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 5.4e-09 63.9 48 62.5
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 7.0e-09 63.5 40 67.5
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.0e-08 62.0 54 53.7
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.3e-07 59.3 54 55.6
unitig_27.g24959 Utricularia gibba HOM05D002570 ORTHO05D002689 2.9e-07 58.2 67 40.3
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 5.0e-07 57.4 37 67.6
Medtr5g006260 Medicago truncatula HOM05D006086 ORTHO05D007396 6.6e-07 57.0 78 35.9
DCAR_012810 Daucus carota HOM05D002570 ORTHO05D002689 1.5e-06 55.8 50 50.0


User provided reference genes

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