Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 5.7e-104 380.9 194 100.0
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 1.9e-99 365.9 193 96.9
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 1.4e-83 313.2 185 84.9
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 1.4e-83 313.2 186 84.4
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 1.5e-80 303.1 185 83.8
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 1.2e-66 256.9 190 72.6
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 1.8e-65 253.1 185 74.6
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 1.8e-62 243.0 182 72.5
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 5.9e-61 238.0 194 67.0
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 5.0e-60 235.0 152 79.6
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 6.5e-60 234.6 182 70.3
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 3.5e-53 212.2 152 73.7
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-51 207.2 152 71.1
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 5.6e-51 204.9 153 71.9
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.4e-48 195.7 138 72.5
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 1.7e-47 193.4 152 71.7
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 2.2e-47 193.0 152 67.1
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 1.2e-45 187.2 143 65.0
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 2.0e-45 186.4 143 65.0
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 2.7e-45 186.0 143 65.0
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 4.6e-45 185.3 143 64.3
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 7.8e-45 184.5 143 64.3
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 7.8e-45 184.5 143 64.3
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 7.8e-45 184.5 143 64.3
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.0e-44 184.1 155 63.9
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 2.3e-44 183.0 139 69.1
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 5.0e-44 181.8 139 68.3
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 6.6e-44 181.4 143 63.6
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 4.3e-43 178.7 165 61.8
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 1.2e-42 177.2 143 62.9
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.6e-42 176.8 143 62.2
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 3.6e-42 175.6 146 61.0
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 4.7e-42 175.3 143 60.1
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 2.0e-40 169.9 143 60.8
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 5.8e-40 168.3 139 61.2
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 5.8e-40 168.3 148 59.5
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 2.9e-39 166.0 148 59.5
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 2.9e-39 166.0 148 59.5
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 8.3e-39 164.5 143 57.3
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.1e-33 146.0 105 69.5
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 1.5e-32 143.7 145 51.7
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 7.5e-32 141.4 145 49.0
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 1.3e-31 140.6 140 52.1
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.3e-31 140.6 140 52.1
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.3e-31 140.6 140 52.1
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.7e-31 140.2 145 51.0
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 1.7e-31 140.2 140 52.1
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 1.7e-31 140.2 175 45.1
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 2.9e-31 139.4 142 50.7
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 2.9e-31 139.4 140 52.1
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 2.9e-31 139.4 137 49.6
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 3.7e-31 139.0 143 51.0
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 3.7e-31 139.0 137 49.6
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 4.9e-31 138.7 140 52.9
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 4.9e-31 138.7 145 51.0
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 4.9e-31 138.7 145 51.0
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 4.9e-31 138.7 140 51.4
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 4.9e-31 138.7 144 48.6
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 6.4e-31 138.3 143 50.3
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 6.4e-31 138.3 137 49.6
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 6.4e-31 138.3 145 49.7
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 8.3e-31 137.9 139 50.4
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 8.3e-31 137.9 143 50.3
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 1.1e-30 137.5 142 50.0
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 1.1e-30 137.5 142 49.3
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 1.1e-30 137.5 176 43.8
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 1.1e-30 137.5 143 50.3
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 1.1e-30 137.5 137 48.9
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 1.1e-30 137.5 137 49.6
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 1.4e-30 137.1 145 49.7
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.4e-30 137.1 137 48.9
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 1.4e-30 137.1 143 50.3
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 1.4e-30 137.1 142 50.0
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 2.4e-30 136.3 139 49.6
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 3.2e-30 136.0 137 48.2
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 3.2e-30 136.0 137 48.2
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 3.2e-30 136.0 142 47.9
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 4.1e-30 135.6 139 49.6
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 4.1e-30 135.6 142 47.9
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 5.4e-30 135.2 139 50.4
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 7.1e-30 134.8 142 47.9
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 7.1e-30 134.8 145 47.6
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 9.2e-30 134.4 142 47.9
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 1.2e-29 134.0 145 49.7
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 1.2e-29 134.0 140 50.0
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 1.6e-29 133.7 145 46.9
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.6e-29 133.7 145 47.6
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.6e-29 133.7 145 46.2
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 2.1e-29 133.3 139 48.2
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 2.1e-29 133.3 145 49.7
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 2.7e-29 132.9 142 48.6
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 2.7e-29 132.9 146 48.6
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 2.7e-29 132.9 145 49.7
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.7e-29 132.9 143 47.6
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 3.5e-29 132.5 140 48.6
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 3.5e-29 132.5 145 49.0
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 4.6e-29 132.1 144 47.9
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 6.0e-29 131.7 145 48.3
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 7.8e-29 131.3 145 48.3
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 7.8e-29 131.3 145 45.5
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 1.0e-28 131.0 139 49.6
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 1.0e-28 131.0 142 47.9
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 1.0e-28 131.0 142 47.9
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.3e-28 130.6 145 46.2
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.3e-28 130.6 142 49.3
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 1.7e-28 130.2 149 46.3
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 2.3e-28 129.8 149 46.3
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 3.9e-28 129.0 139 48.2
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 5.1e-28 128.6 145 44.1
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 5.1e-28 128.6 147 46.9
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 6.6e-28 128.3 140 50.0
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 1.1e-27 127.5 147 44.9
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 1.9e-27 126.7 145 44.1
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 2.5e-27 126.3 145 47.6
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 3.3e-27 125.9 139 46.8
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 3.3e-27 125.9 142 47.9
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 7.3e-27 124.8 144 43.1
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 1.2e-26 124.0 145 44.1
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 1.6e-26 123.6 146 43.8
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 1.6e-26 123.6 139 46.8
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 2.8e-26 122.9 146 44.5
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 2.8e-26 122.9 144 45.1
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 2.8e-26 122.9 148 43.2
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 3.6e-26 122.5 146 44.5
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.1e-25 120.9 145 44.8
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 1.4e-25 120.6 146 44.5
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 1.8e-25 120.2 145 43.4
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 3.1e-25 119.4 142 44.4
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 3.1e-25 119.4 147 44.9
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 4.0e-25 119.0 146 43.8
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 6.8e-25 118.2 140 42.1
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 1.5e-24 117.1 145 42.8
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 1.5e-24 117.1 137 43.1
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 3.4e-24 115.9 127 45.7
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 7.6e-24 114.8 145 46.9
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 2.9e-23 112.8 91 63.7
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 4.1e-22 109.0 170 37.1
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 2.7e-21 106.3 133 42.1
A01p31840 Brassica napus HOM05D004840 ORTHO05D005751 1.9e-14 83.6 77 62.3
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 6.0e-13 78.6 145 36.6
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 1.2e-08 64.3 93 40.9
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 1.5e-08 63.9 58 46.6
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.4e-06 57.4 76 42.1


User provided reference genes

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