Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p31130 Brassica napus HOM05D002220 ORTHO05D041941 6.8e-23 109.8 54 100.0
BraA01t03237Z Brassica rapa HOM05D002220 ORTHO05D041941 6.8e-23 109.8 54 100.0
BcaB03g14601 Brassica carinata HOM05D002220 ORTHO05D006521 4.5e-11 70.5 51 74.5
A03p43470 Brassica napus HOM05D002220 ORTHO05D006521 4.5e-11 70.5 51 74.5
BraA03t13485Z Brassica rapa HOM05D002220 ORTHO05D006521 4.5e-11 70.5 51 74.5
BcaC01g03346 Brassica carinata HOM05D002220 ORTHO05D006521 7.8e-11 69.7 49 77.6
C03p53430 Brassica napus HOM05D002220 ORTHO05D006521 7.8e-11 69.7 49 77.6
BolC3t17604H Brassica oleracea HOM05D002220 ORTHO05D006521 7.8e-11 69.7 49 77.6
Thhalv10002792m.g Eutrema salsugineum HOM05D002220 ORTHO05D006521 7.8e-11 69.7 49 77.6
Sp3g21760 Schrenkiella parvula HOM05D002220 ORTHO05D006521 7.8e-11 69.7 49 77.6
THA.LOC104808719 Tarenaya hassleriana HOM05D002220 ORTHO05D006521 7.8e-11 69.7 49 75.5
CARHR100030 Cardamine hirsuta HOM05D002220 ORTHO05D006521 1.3e-10 68.9 51 72.5
AT3G24170 Arabidopsis thaliana HOM05D002220 ORTHO05D006521 2.3e-10 68.2 51 72.5
AL3G39090 Arabidopsis lyrata HOM05D002220 ORTHO05D006521 3.9e-10 67.4 49 75.5
Carub.0003s2433 Capsella rubella HOM05D002220 ORTHO05D006521 5.0e-10 67.0 49 73.5
Hund05333 Selenicereus undatus HOM05D002220 ORTHO05D006521 1.1e-09 65.9 51 70.6
Sabra01G0034900 Salix brachista HOM05D002220 ORTHO05D006521 2.5e-09 64.7 51 64.7
BcaB06g26569 Brassica carinata HOM05D002220 ORTHO05D006521 4.3e-09 63.9 49 69.4
BcaC06g35607 Brassica carinata HOM05D002220 ORTHO05D006521 4.3e-09 63.9 49 69.4
A07p08340 Brassica napus HOM05D002220 ORTHO05D006521 4.3e-09 63.9 49 69.4
C07p13030 Brassica napus HOM05D002220 ORTHO05D006521 4.3e-09 63.9 49 69.4
BolC7t41795H Brassica oleracea HOM05D002220 ORTHO05D006521 4.3e-09 63.9 49 69.4
BraA07t28620Z Brassica rapa HOM05D002220 ORTHO05D006521 4.3e-09 63.9 49 69.4
CSS0045927 Camellia sinensis var. sinensis HOM05D002220 ORTHO05D006521 4.3e-09 63.9 49 67.3
Manes.15G051800 Manihot esculenta HOM05D002220 ORTHO05D006521 4.3e-09 63.9 49 67.3
Sc25g0005840 Simmondsia chinensis HOM05D002220 ORTHO05D006521 4.3e-09 63.9 49 67.3
Aa31LG8G10650 Aethionema arabicum HOM05D002220 ORTHO05D006521 5.6e-09 63.5 49 69.4
COL.COLO4_20266 Corchorus olitorius HOM05D002220 ORTHO05D006521 5.6e-09 63.5 49 67.3
Duzib151G1134 Durio zibethinus HOM05D002220 ORTHO05D006521 5.6e-09 63.5 49 67.3
Eucgr.H02852 Eucalyptus grandis HOM05D002220 ORTHO05D006521 5.6e-09 63.5 49 67.3
Lj2g0004230 Lotus japonicus HOM05D002220 ORTHO05D006521 5.6e-09 63.5 51 66.7
Thecc.04G206700 Theobroma cacao HOM05D002220 ORTHO05D006521 5.6e-09 63.5 49 67.3
RcHm_v2.0_Chr4g0385881 Rosa chinensis HOM05D002220 ORTHO05D006521 7.3e-09 63.2 50 70.0
Sabra03G0130700 Salix brachista HOM05D002220 ORTHO05D006521 9.5e-09 62.8 51 62.7
Glyma.02G074200 Glycine max HOM05D002220 ORTHO05D006521 1.2e-08 62.4 49 67.3
Manes.03G149200 Manihot esculenta HOM05D002220 ORTHO05D006521 1.2e-08 62.4 49 67.3
PGR142G0043 Punica granatum HOM05D002220 ORTHO05D006521 1.2e-08 62.4 49 65.3
Cpa.g.sc59.122 Carica papaya HOM05D002220 ORTHO05D006521 1.6e-08 62.0 44 72.7
Gohir.D02G122700 Gossypium hirsutum HOM05D002220 ORTHO05D006521 1.6e-08 62.0 44 72.7
Gorai.005G131500 Gossypium raimondii HOM05D002220 ORTHO05D006521 1.6e-08 62.0 44 72.7
Glyma.16G155700 Glycine max HOM05D002220 ORTHO05D006521 2.1e-08 61.6 49 67.3
Migut.N00369 Erythranthe guttata HOM05D002220 ORTHO05D006521 2.8e-08 61.2 51 64.7
Potri.003G178200 Populus trichocarpa HOM05D002220 ORTHO05D006521 2.8e-08 61.2 51 60.8
Potri.001G050000 Populus trichocarpa HOM05D002220 ORTHO05D006521 3.6e-08 60.8 51 60.8
Prupe.1G004800 Prunus persica HOM05D002220 ORTHO05D006521 3.6e-08 60.8 49 69.4
arahy.Tifrunner.gnm1.ann1.GM7FG5 Arachis hypogaea HOM05D002220 ORTHO05D006521 4.7e-08 60.5 49 65.3
arahy.Tifrunner.gnm1.ann1.K53WYZ Arachis hypogaea HOM05D002220 ORTHO05D006521 4.7e-08 60.5 49 65.3
Lalb_Chr19g0129761 Lupinus albus HOM05D002220 ORTHO05D006521 4.7e-08 60.5 49 65.3
Lalb_Chr21g0312611 Lupinus albus HOM05D002220 ORTHO05D006521 4.7e-08 60.5 49 65.3
SGA_v2.0_scaffold216G42367 Striga asiatica HOM05D002220 ORTHO05D006521 4.7e-08 60.5 49 65.3
Actinidia11409 Actinidia chinensis HOM05D002220 ORTHO05D006521 6.1e-08 60.1 49 65.3
Migut.G00658 Erythranthe guttata HOM05D002220 ORTHO05D006521 6.1e-08 60.1 49 67.3
MD04G1004900 Malus domestica HOM05D002220 ORTHO05D006521 6.1e-08 60.1 50 66.0
GSVIVG01029079001 Vitis vinifera HOM05D002220 ORTHO05D006521 6.1e-08 60.1 49 67.3
CiPaw.01G122900 Carya illinoinensis HOM05D002220 ORTHO05D006521 8.0e-08 59.7 44 72.7
CiPaw.02G067200 Carya illinoinensis HOM05D002220 ORTHO05D006521 8.0e-08 59.7 44 72.7
Gohir.A10G122600 Gossypium hirsutum HOM05D002220 ORTHO05D006521 8.0e-08 59.7 49 63.3
FAN17G1150 Fragaria x ananassa HOM05D002220 ORTHO05D006521 1.0e-07 59.3 50 66.0
FAN22G2163 Fragaria x ananassa HOM05D002220 ORTHO05D006521 1.0e-07 59.3 50 66.0
Oeu026867.1 Olea europaea HOM05D002220 ORTHO05D006521 1.0e-07 59.3 49 63.3
SEGI_33820 Sequoiadendron giganteum HOM05D002220 ORTHO05D006521 1.0e-07 59.3 51 62.7
TWI09G1374 Tripterygium wilfordii HOM05D002220 ORTHO05D006521 1.0e-07 59.3 49 63.3
Actinidia39960 Actinidia chinensis HOM05D002220 ORTHO05D006521 1.4e-07 58.9 49 65.3
Ah.13g074650 Amaranthus hybridus HOM05D002220 ORTHO05D006521 1.4e-07 58.9 49 65.3
Duzib212G0807 Durio zibethinus HOM05D002220 ORTHO05D006521 1.4e-07 58.9 49 61.2
Gohir.A03G093500 Gossypium hirsutum HOM05D002220 ORTHO05D006521 1.4e-07 58.9 44 70.5
MBI07_g00290_MAGBIO Magnolia biondii HOM05D002220 ORTHO05D006521 1.4e-07 58.9 49 69.4
Medtr6g033515 Medicago truncatula HOM05D002220 ORTHO05D006521 1.4e-07 58.9 44 70.5
SalBow8G5124 Salvia bowleyana HOM05D002220 ORTHO05D006521 1.4e-07 58.9 51 60.8
Ciclev10004819m.g Citrus clementina HOM05D002220 ORTHO05D006521 1.8e-07 58.5 49 61.2
Cc03_g07600 Coffea canephora HOM05D002220 ORTHO05D006521 1.8e-07 58.5 49 63.3
Haze_11593 Corylus avellana HOM05D002220 ORTHO05D006521 1.8e-07 58.5 49 69.4
Peaxi162Scf00047g00721 Petunia axillaris HOM05D002220 ORTHO05D006521 1.8e-07 58.5 51 62.7
SGA_v2.0_scaffold57G20133 Striga asiatica HOM05D002220 ORTHO05D006521 1.8e-07 58.5 49 63.3
CDE02G2855 Ceratophyllum demersum HOM05D002220 ORTHO05D006521 2.3e-07 58.2 49 67.3
Ca_14001_v3 Cicer arietinum L. HOM05D002220 ORTHO05D006521 2.3e-07 58.2 44 70.5
Psat1g098440 Pisum sativum HOM05D002220 ORTHO05D006521 2.3e-07 58.2 50 66.0
QL06p024003 Quercus lobata HOM05D002220 ORTHO05D006521 2.3e-07 58.2 49 65.3
Rhsim02G0056200 Rhododendron simsii HOM05D002220 ORTHO05D006521 2.3e-07 58.2 44 70.5
AUR62035370 Chenopodium quinoa HOM05D002220 ORTHO05D006521 3.1e-07 57.8 44 72.7
AUR62035879 Chenopodium quinoa HOM05D002220 ORTHO05D006521 3.1e-07 57.8 44 72.7
Lalb_Chr06g0169721 Lupinus albus HOM05D002220 ORTHO05D006521 3.1e-07 57.8 49 63.3
VMungo0464G1488 Vigna mungo HOM05D002220 ORTHO05D006521 3.1e-07 57.8 49 65.3
EL10Ac3g06706 Beta vulgaris HOM05D002220 ORTHO05D006521 4.0e-07 57.4 49 63.3
Cfa014928 Carpinus fangiana HOM05D002220 ORTHO05D006521 4.0e-07 57.4 49 67.3
Dinv38252 Davidia involucrata HOM05D002220 ORTHO05D006521 4.0e-07 57.4 49 61.2
Gohir.D10G143400 Gossypium hirsutum HOM05D002220 ORTHO05D006521 4.0e-07 57.4 49 61.2
Gorai.011G160200 Gossypium raimondii HOM05D002220 ORTHO05D006521 4.0e-07 57.4 49 61.2
HanXRQChr01g0022211 Helianthus annuus HOM05D002220 ORTHO05D006521 4.0e-07 57.4 49 65.3
Lsat_1_v5_gn_1_72861 Lactuca sativa HOM05D002220 ORTHO05D006521 4.0e-07 57.4 49 63.3
TAR365G1175 Trochodendron aralioides HOM05D002220 ORTHO05D006521 4.0e-07 57.4 49 63.3
Atru.chr4.1738 Acer truncatum HOM05D002220 ORTHO05D006521 5.2e-07 57.0 49 59.2
CSS0026408 Camellia sinensis var. sinensis HOM05D002220 ORTHO05D006521 6.8e-07 56.6 49 61.2
CSS0044678 Camellia sinensis var. sinensis HOM05D002220 ORTHO05D006521 6.8e-07 56.6 49 61.2
CAN.G500.16 Capsicum annuum HOM05D002220 ORTHO05D006521 6.8e-07 56.6 51 64.7
MELO3C006322.2 Cucumis melo HOM05D002220 ORTHO05D006521 6.8e-07 56.6 49 61.2
CsaV3_3G011090 Cucumis sativus L. HOM05D002220 ORTHO05D006521 6.8e-07 56.6 49 61.2
FvH4_4g00450 Fragaria vesca HOM05D002220 ORTHO05D006521 6.8e-07 56.6 50 62.0
FAN12G0835 Fragaria x ananassa HOM05D002220 ORTHO05D006521 6.8e-07 56.6 50 62.0
Nn3g19941 Nelumbo nucifera HOM05D002220 ORTHO05D006521 6.8e-07 56.6 52 59.6
Nitab4.5_0004974g0090 Nicotiana tabacum HOM05D002220 ORTHO05D006521 6.8e-07 56.6 51 60.8
Solyc09g091840.4 Solanum lycopersicum HOM05D002220 ORTHO05D006521 6.8e-07 56.6 51 60.8
Sopen09g034730 Solanum pennellii HOM05D002220 ORTHO05D006521 6.8e-07 56.6 51 60.8
PGSC0003DMG400029663 Solanum tuberosum HOM05D002220 ORTHO05D006521 6.8e-07 56.6 51 60.8
ECA248G3956 Erigeron canadensis HOM05D002220 ORTHO05D006521 8.9e-07 56.2 49 63.3
Oeu022361.1 Olea europaea HOM05D002220 ORTHO05D006521 8.9e-07 56.2 49 61.2
PSO017G2638 Papaver somniferum HOM05D002220 ORTHO05D006521 8.9e-07 56.2 49 61.2
unitig_26.g9778 Utricularia gibba HOM05D002220 ORTHO05D006521 8.9e-07 56.2 49 65.3
CANSAT78G0556 Cannabis sativa HOM05D002220 ORTHO05D006521 1.2e-06 55.8 49 65.3
HanXRQChr11g0342801 Helianthus annuus HOM05D002220 ORTHO05D006521 1.2e-06 55.8 49 63.3
MSTRG.24624 Avicennia marina HOM05D002220 ORTHO05D006521 1.5e-06 55.5 49 61.2
ClCG05G003420 Citrullus lanatus HOM05D002220 ORTHO05D006521 1.5e-06 55.5 49 61.2
MBI10_g33980_MAGBIO Magnolia biondii HOM05D002220 ORTHO05D006521 1.5e-06 55.5 49 59.2
PSO675G4374 Papaver somniferum HOM05D002220 ORTHO05D006521 2.0e-06 55.1 49 59.2
Zm00001eb258600 Zea mays HOM05D002220 ORTHO05D006521 2.6e-06 54.7 51 56.9
Nn1g07802 Nelumbo nucifera HOM05D002220 ORTHO05D006521 3.4e-06 54.3 49 57.1
Nitab4.5_0003750g0040 Nicotiana tabacum HOM05D002220 ORTHO05D006521 3.4e-06 54.3 51 58.8
TPR.G36668 Trifolium pratense HOM05D002220 ORTHO05D006521 3.4e-06 54.3 44 63.6
Dinv29582 Davidia involucrata HOM05D001653 ORTHO05D001751 4.4e-06 53.9 49 57.1
Os02g0813500 Oryza sativa ssp. japonica HOM05D002220 ORTHO05D006521 4.4e-06 53.9 46 60.9
Phvul.004G084094 Phaseolus vulgaris HOM05D002220 ORTHO05D006521 5.8e-06 53.5 49 61.2
unitig_749.g13816 Utricularia gibba HOM05D002220 ORTHO05D006521 5.8e-06 53.5 49 57.1
DCAR_001395 Daucus carota HOM05D002220 ORTHO05D006521 7.5e-06 53.1 49 59.2
SalBow3G2557 Salvia bowleyana HOM05D002220 ORTHO05D006521 9.8e-06 52.8 49 63.3
HPP92_010731 Vanilla planifolia HOM05D002220 ORTHO05D006521 9.8e-06 52.8 51 56.9


User provided reference genes

Program Settings