Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20373 Brassica carinata HOM05D006758 ORTHO05D008326 2.1e-19 97.8 43 100.0
A01p30660 Brassica napus HOM05D006758 ORTHO05D008326 2.1e-19 97.8 43 100.0
Sp2g02770 Schrenkiella parvula HOM05D006758 ORTHO05D008326 2.1e-19 97.8 43 100.0
Aa31LG1G3210 Aethionema arabicum HOM05D006758 ORTHO05D008326 4.7e-19 96.7 43 97.7
AL2G14330 Arabidopsis lyrata HOM05D006758 ORTHO05D008326 4.7e-19 96.7 43 97.7
AT1G61780 Arabidopsis thaliana HOM05D006758 ORTHO05D008326 4.7e-19 96.7 43 97.7
BcaC04g22349 Brassica carinata HOM05D006758 ORTHO05D008326 4.7e-19 96.7 43 97.7
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 4.7e-19 96.7 43 97.7
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 4.7e-19 96.7 43 97.7
Carub.0002s0329 Capsella rubella HOM05D006758 ORTHO05D008326 4.7e-19 96.7 43 97.7
A01p30680 Brassica napus HOM05D006758 ORTHO05D008326 8.1e-19 95.9 43 97.7
BraA01t03197Z Brassica rapa HOM05D006758 ORTHO05D008326 8.1e-19 95.9 43 97.7
COL.COLO4_31733 Corchorus olitorius HOM05D006758 ORTHO05D008326 1.1e-18 95.5 43 95.3
Nitab4.5_0002347g0160 Nicotiana tabacum HOM05D006758 ORTHO05D008326 1.1e-18 95.5 43 95.3
Nitab4.5_0008530g0010 Nicotiana tabacum HOM05D006758 ORTHO05D008326 1.1e-18 95.5 43 95.3
Prupe.4G025700 Prunus persica HOM05D006758 ORTHO05D008326 1.1e-18 95.5 43 95.3
Thhalv10023778m.g Eutrema salsugineum HOM05D006758 ORTHO05D008326 1.4e-18 95.1 43 95.3
BcaB07g31284 Brassica carinata HOM05D006758 ORTHO05D008326 1.8e-18 94.7 42 97.6
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 1.8e-18 94.7 42 97.6
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 1.8e-18 94.7 42 97.6
CARHR050560 Cardamine hirsuta HOM05D006758 ORTHO05D008326 1.8e-18 94.7 42 97.6
Peaxi162Scf00082g10217 Petunia axillaris HOM05D006758 ORTHO05D008326 1.8e-18 94.7 43 95.3
TWI38G0518 Tripterygium wilfordii HOM05D006758 ORTHO05D008326 1.8e-18 94.7 43 95.3
unitig_61.g26114 Utricularia gibba HOM05D006758 ORTHO05D008326 1.8e-18 94.7 43 95.3
Gohir.A09G069700 Gossypium hirsutum HOM05D006758 ORTHO05D008326 3.1e-18 94.0 43 93.0
Gohir.D09G069600 Gossypium hirsutum HOM05D006758 ORTHO05D008326 3.1e-18 94.0 43 93.0
Gorai.006G083800 Gossypium raimondii HOM05D006758 ORTHO05D008326 3.1e-18 94.0 43 93.0
MD05G1341600 Malus domestica HOM05D006758 ORTHO05D008326 3.1e-18 94.0 43 93.0
MD10G1315000 Malus domestica HOM05D006758 ORTHO05D008326 3.1e-18 94.0 43 93.0
Potri.004G021200 Populus trichocarpa HOM05D006758 ORTHO05D008326 3.1e-18 94.0 43 93.0
Sed0024295 Sechium edule HOM05D006758 ORTHO05D008326 3.1e-18 94.0 43 93.0
Actinidia11840 Actinidia chinensis HOM05D006758 ORTHO05D008326 4.0e-18 93.6 43 93.0
CAN.G569.41 Capsicum annuum HOM05D006758 ORTHO05D008326 4.0e-18 93.6 42 95.2
Solyc02g080140.4 Solanum lycopersicum HOM05D006758 ORTHO05D008326 4.0e-18 93.6 42 95.2
Sopen02g024850 Solanum pennellii HOM05D006758 ORTHO05D008326 4.0e-18 93.6 42 95.2
Ca_10997_v3 Cicer arietinum L. HOM05D006758 ORTHO05D008326 5.2e-18 93.2 43 93.0
MELO3C007373.2 Cucumis melo HOM05D006758 ORTHO05D008326 5.2e-18 93.2 43 93.0
CsaV3_6G049220 Cucumis sativus L. HOM05D006758 ORTHO05D008326 5.2e-18 93.2 43 93.0
Oeu037351.1 Olea europaea HOM05D006758 ORTHO05D008326 5.2e-18 93.2 43 93.0
Rhsim02G0111700 Rhododendron simsii HOM05D006758 ORTHO05D008326 5.2e-18 93.2 43 93.0
SGA_v2.0_scaffold7G03879 Striga asiatica HOM05D006758 ORTHO05D008326 5.2e-18 93.2 43 93.0
TPR.G5478 Trifolium pratense HOM05D006758 ORTHO05D008326 5.2e-18 93.2 43 93.0
EL10Ac8g19995 Beta vulgaris HOM05D006758 ORTHO05D008326 6.8e-18 92.8 43 93.0
THA.LOC104809516 Tarenaya hassleriana HOM05D006758 ORTHO05D008326 6.8e-18 92.8 43 93.0
CANSAT56G2354 Cannabis sativa HOM05D006758 ORTHO05D008326 8.9e-18 92.4 43 90.7
Lj5g0020351 Lotus japonicus HOM05D006758 ORTHO05D008326 8.9e-18 92.4 43 90.7
Sabra04G0011700 Salix brachista HOM05D006758 ORTHO05D008326 8.9e-18 92.4 43 90.7
Thecc.06G214600 Theobroma cacao HOM05D006758 ORTHO05D008326 8.9e-18 92.4 43 93.0
Duzib235G1228 Durio zibethinus HOM05D006758 ORTHO05D008326 1.2e-17 92.0 43 90.7
FvH4_3g02640 Fragaria vesca HOM05D006758 ORTHO05D008326 1.2e-17 92.0 43 90.7
Hma1.2p1_2726F.1_g327620 Hydrangea macrophylla HOM05D006758 ORTHO05D008326 1.2e-17 92.0 43 88.4
Psat0s2691g0120 Pisum sativum HOM05D006758 ORTHO05D008326 1.2e-17 92.0 43 90.7
RcHm_v2.0_Chr5g0003931 Rosa chinensis HOM05D006758 ORTHO05D008326 1.2e-17 92.0 43 90.7
CiPaw.09G087600 Carya illinoinensis HOM05D006758 ORTHO05D008326 1.5e-17 91.7 43 90.7
Migut.M01286 Erythranthe guttata HOM05D006758 ORTHO05D008326 1.5e-17 91.7 43 90.7
Gohir.A06G207900 Gossypium hirsutum HOM05D006758 ORTHO05D008326 1.5e-17 91.7 43 90.7
Gorai.010G252900 Gossypium raimondii HOM05D006758 ORTHO05D008326 1.5e-17 91.7 43 90.7
Os08g0190800 Oryza sativa ssp. japonica HOM05D006758 ORTHO05D008326 1.5e-17 91.7 43 90.7
Zm00001eb413280 Zea mays HOM05D006758 ORTHO05D008326 1.5e-17 91.7 43 90.7
DCAR_004197 Daucus carota HOM05D006758 ORTHO05D008326 2.0e-17 91.3 43 88.4
Lalb_Chr06g0164881 Lupinus albus HOM05D006758 ORTHO05D008326 2.0e-17 91.3 43 90.7
PGR004G2441 Punica granatum HOM05D006758 ORTHO05D008326 2.0e-17 91.3 43 90.7
arahy.Tifrunner.gnm1.ann1.GJ8XD1 Arachis hypogaea HOM05D006758 ORTHO05D008326 2.6e-17 90.9 43 90.7
arahy.Tifrunner.gnm1.ann1.ND4ZK6 Arachis hypogaea HOM05D006758 ORTHO05D008326 2.6e-17 90.9 43 90.7
ClCG01G022160 Citrullus lanatus HOM05D006758 ORTHO05D008326 2.6e-17 90.9 43 90.7
Ciclev10017296m.g Citrus clementina HOM05D006758 ORTHO05D008326 2.6e-17 90.9 43 90.7
Cc02_g11670 Coffea canephora HOM05D006758 ORTHO05D008326 2.6e-17 90.9 43 90.7
ECA234G0861 Erigeron canadensis HOM05D006758 ORTHO05D008326 2.6e-17 90.9 43 90.7
HanXRQChr16g0515881 Helianthus annuus HOM05D006758 ORTHO05D008326 2.6e-17 90.9 43 90.7
Phvul.007G052700 Phaseolus vulgaris HOM05D006758 ORTHO05D008326 2.6e-17 90.9 43 90.7
TAR624G0544 Trochodendron aralioides HOM05D006758 ORTHO05D008326 2.6e-17 90.9 43 90.7
TAR626G1807 Trochodendron aralioides HOM05D006758 ORTHO05D008326 2.6e-17 90.9 41 92.7
AUR62022003 Chenopodium quinoa HOM05D006758 ORTHO05D008326 3.4e-17 90.5 43 90.7
Duzib192G0534 Durio zibethinus HOM05D006758 ORTHO05D008326 3.4e-17 90.5 43 88.4
Hma1.2p1_2714F.1_g327410 Hydrangea macrophylla HOM05D006758 ORTHO05D008326 3.4e-17 90.5 43 88.4
GSVIVG01012634001 Vitis vinifera HOM05D006758 ORTHO05D008326 3.4e-17 90.5 43 88.4
Dinv20021 Davidia involucrata HOM05D006758 ORTHO05D008326 4.4e-17 90.1 43 88.4
Eucgr.D01293 Eucalyptus grandis HOM05D006758 ORTHO05D008326 4.4e-17 90.1 43 88.4
PSO210G7269 Papaver somniferum HOM05D006758 ORTHO05D008326 4.4e-17 90.1 43 88.4
PSO832G0089 Papaver somniferum HOM05D006758 ORTHO05D008326 4.4e-17 90.1 43 88.4
Lsat_1_v5_gn_4_59120 Lactuca sativa HOM05D006758 ORTHO05D008326 5.8e-17 89.7 42 88.1
Manes.17G035700 Manihot esculenta HOM05D006758 ORTHO05D008326 5.8e-17 89.7 43 88.4
DCAR_008127 Daucus carota HOM05D006758 ORTHO05D008326 7.5e-17 89.4 43 86.0
Nn1g03624 Nelumbo nucifera HOM05D006758 ORTHO05D008326 7.5e-17 89.4 43 88.4
Oeu051222.1 Olea europaea HOM05D006758 ORTHO05D008326 7.5e-17 89.4 43 88.4
Dinv17829 Davidia involucrata HOM05D006758 ORTHO05D008326 1.3e-16 88.6 42 90.5
Glyma.10G251800 Glycine max HOM05D006758 ORTHO05D008326 1.3e-16 88.6 42 90.5
Glyma.20G141700 Glycine max HOM05D006758 ORTHO05D008326 1.3e-16 88.6 42 90.5
SHI02162 Sapria himalayana HOM05D006758 ORTHO05D008326 1.7e-16 88.2 43 86.0
CDE05G3555 Ceratophyllum demersum HOM05D006758 ORTHO05D008326 2.9e-16 87.4 43 86.0
Pp3c2_14210 Physcomitrium patens HOM05D006758 ORTHO05D008326 6.4e-16 86.3 43 83.7
ATR0661G232 Amborella trichopoda HOM05D006758 ORTHO05D008326 1.1e-15 85.5 43 79.1
Sabra11G0016800 Salix brachista HOM05D006758 ORTHO05D008326 5.4e-15 83.2 43 83.7
SMO351G0293 Selaginella moellendorffii HOM05D006758 ORTHO05D008326 3.5e-14 80.5 43 74.4
CBR_g45280 Chara braunii HOM05D006758 ORTHO05D008326 6.0e-14 79.7 42 81.0
Mapoly0102s0010 Marchantia polymorpha HOM05D006758 ORTHO05D008326 7.8e-14 79.3 43 76.7
AagrBONN_evm.TU.Sc2ySwM_344.4905 Anthoceros agrestis HOM05D006758 ORTHO05D008326 1.0e-13 79.0 42 78.6
Cre16.g670200 Chlamydomonas reinhardtii HOM05D006758 ORTHO05D008326 1.4e-10 68.6 38 71.1
Sc17g0007080 Simmondsia chinensis HOM05D006758 ORTHO05D008326 1.3e-08 62.0 27 88.9
CSS0030244 Camellia sinensis var. sinensis HOM05D006758 ORTHO05D008326 4.9e-08 60.1 26 88.5
MBI16_g27830_MAGBIO Magnolia biondii HOM05D004176 ORTHO05D008326 1.9e-07 58.2 42 64.3
MCO09G771 Micromonas commoda HOM05D006758 ORTHO05D008326 5.4e-07 56.6 36 58.3
Ah.09g235270 Amaranthus hybridus HOM05D006758 ORTHO05D008326 2.1e-06 54.7 27 77.8
MBI15_g03894_MAGBIO Magnolia biondii HOM05D006758 ORTHO05D008326 2.7e-06 54.3 42 59.5


User provided reference genes

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