Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p30200 Brassica napus HOM05D002165 ORTHO05D001531 1.5e-43 179.1 90 100.0
BcaC09g47857 Brassica carinata HOM05D002165 ORTHO05D001531 1.7e-39 165.6 90 92.2
BolC1t05659H Brassica oleracea HOM05D002165 ORTHO05D001531 1.7e-39 165.6 90 92.2
BraA01t04469Z Brassica rapa HOM05D002165 ORTHO05D001531 1.7e-39 165.6 90 92.2
BcaB04g19240 Brassica carinata HOM05D002165 ORTHO05D001531 2.8e-37 158.3 90 91.1
A03p34320 Brassica napus HOM05D002165 ORTHO05D001531 3.6e-37 157.9 89 91.0
BraA03t12608Z Brassica rapa HOM05D002165 ORTHO05D001531 3.6e-37 157.9 89 91.0
BcaC01g04301 Brassica carinata HOM05D002165 ORTHO05D001531 1.1e-36 156.4 89 89.9
C03p41790 Brassica napus HOM05D002165 ORTHO05D001531 1.1e-36 156.4 89 89.9
BolC3t16462H Brassica oleracea HOM05D002165 ORTHO05D001531 1.1e-36 156.4 89 89.9
Thhalv10021847m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 1.8e-36 155.6 90 88.9
Sp3g04720 Schrenkiella parvula HOM05D002165 ORTHO05D001531 4.0e-36 154.5 90 90.0
AT3G05858 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 1.2e-35 152.9 91 89.0
AL3G16610 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 7.5e-35 150.2 91 86.8
CARHR080310 Cardamine hirsuta HOM05D002165 ORTHO05D001531 9.8e-35 149.8 89 86.5
Carub.0003s0521 Capsella rubella HOM05D002165 ORTHO05D001531 6.4e-34 147.1 89 84.3
C05p61420 Brassica napus HOM05D002165 ORTHO05D001531 5.1e-31 137.5 90 82.2
BolC5t34800H Brassica oleracea HOM05D002165 ORTHO05D001531 5.1e-31 137.5 90 82.2
BcaC05g29776 Brassica carinata HOM05D002165 ORTHO05D001531 6.6e-31 137.1 90 81.1
BcaC05g30083 Brassica carinata HOM05D002165 ORTHO05D001531 8.6e-31 136.7 90 81.1
THA.LOC104818754 Tarenaya hassleriana HOM05D002165 ORTHO05D001531 1.1e-30 136.3 93 82.8
AL6G38560 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 6.2e-29 130.6 88 81.8
CARHR186860 Cardamine hirsuta HOM05D002165 ORTHO05D001531 8.9e-28 126.7 88 78.4
Carub.0006s2437 Capsella rubella HOM05D002165 ORTHO05D001531 2.0e-27 125.6 88 78.4
Aa31LG5G16230 Aethionema arabicum HOM05D002165 ORTHO05D001531 4.4e-27 124.4 90 73.3
A05p42200 Brassica napus HOM05D002165 ORTHO05D001531 9.9e-27 123.2 83 78.3
BraA05t22939Z Brassica rapa HOM05D002165 ORTHO05D001531 9.9e-27 123.2 83 78.3
BcaC04g23632 Brassica carinata HOM05D002165 ORTHO05D001531 3.7e-26 121.3 89 76.4
C09p06310 Brassica napus HOM05D002165 ORTHO05D001531 3.7e-26 121.3 89 76.4
BolC9t53551H Brassica oleracea HOM05D002165 ORTHO05D001531 3.7e-26 121.3 89 76.4
A09p05720 Brassica napus HOM05D002165 ORTHO05D001531 4.9e-26 120.9 87 78.2
BraA09t36213Z Brassica rapa HOM05D002165 ORTHO05D001531 4.9e-26 120.9 87 78.2
BcaNung03681 Brassica carinata HOM05D002165 ORTHO05D001531 6.4e-26 120.6 87 79.3
C07p41550 Brassica napus HOM05D002165 ORTHO05D001531 6.4e-26 120.6 87 79.3
BolC7t44687H Brassica oleracea HOM05D002165 ORTHO05D001531 6.4e-26 120.6 87 79.3
BcaNung03907 Brassica carinata HOM05D002165 ORTHO05D001531 8.3e-26 120.2 87 79.3
A06p36950 Brassica napus HOM05D002165 ORTHO05D001531 8.3e-26 120.2 87 79.3
BraA06t26620Z Brassica rapa HOM05D002165 ORTHO05D001531 8.3e-26 120.2 87 79.3
Thhalv10005460m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 2.4e-25 118.6 83 79.5
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 5.4e-25 117.5 87 77.0
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 5.4e-25 117.5 87 77.0
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 5.4e-25 117.5 87 77.0
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 5.4e-25 117.5 87 77.0
Aa31LG11G9930 Aethionema arabicum HOM05D002165 ORTHO05D001531 7.1e-25 117.1 82 76.8
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 1.6e-24 115.9 87 75.9
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 4.6e-24 114.4 82 79.3
BcaB07g29941 Brassica carinata HOM05D002165 ORTHO05D001531 1.7e-23 112.5 87 74.7
BcaB04g19717 Brassica carinata HOM05D002165 ORTHO05D001531 1.5e-22 109.4 82 75.6
AT5G26620 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 4.3e-22 107.8 68 83.8
Aqoxy5G02840 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 1.0e-15 86.7 84 57.1
Cpa.g.sc48.225 Carica papaya HOM05D002165 ORTHO05D001531 2.3e-15 85.5 88 61.4
Eucgr.H01327 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.0e-15 85.1 86 58.1
Eucgr.H01329 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.0e-15 85.1 86 58.1
Eucgr.H01330 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.3e-14 81.6 82 59.8
Eucgr.H01325 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.3e-14 81.3 85 56.5
Eucgr.H01326 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.3e-14 81.3 85 56.5
TAR362G0276 Trochodendron aralioides HOM05D002165 ORTHO05D001531 5.6e-14 80.9 85 54.1
Eucgr.H01328 Eucalyptus grandis HOM05D002165 ORTHO05D001531 7.3e-14 80.5 82 58.5
TAR633G1086 Trochodendron aralioides HOM05D002165 ORTHO05D001531 2.1e-13 79.0 85 52.9
PSO761G0534 Papaver somniferum HOM05D002165 ORTHO05D001531 3.6e-13 78.2 89 49.4
Eucgr.H01332 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.4e-12 76.3 91 52.7
Aqoxy2G02476 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 3.1e-12 75.1 79 51.9
Duzib128G1662 Durio zibethinus HOM05D002165 ORTHO05D001531 3.1e-12 75.1 90 50.0
Eucgr.H01321 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.1e-12 75.1 81 58.0
Eucgr.H01324 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.1e-12 75.1 84 54.8
Eucgr.H01334 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.1e-12 75.1 84 52.4
Ciclev10013220m.g Citrus clementina HOM05D002165 ORTHO05D001531 5.3e-12 74.3 92 55.4
Ciclev10013222m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.5e-11 72.8 92 54.3
Eucgr.H01331 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.0e-11 72.4 85 51.8
Thecc.09G084900 Theobroma cacao HOM05D002165 ORTHO05D001531 7.6e-11 70.5 84 52.4
COL.COLO4_05484 Corchorus olitorius HOM05D002165 ORTHO05D001531 2.2e-10 68.9 82 52.4
Manes.08G107400 Manihot esculenta HOM05D002165 ORTHO05D001531 2.2e-10 68.9 87 49.4
Ciclev10010714m.g Citrus clementina HOM05D002165 ORTHO05D001531 2.9e-10 68.6 92 54.3
Potri.010G003900 Populus trichocarpa HOM05D002165 ORTHO05D001531 2.9e-10 68.6 85 51.8
Atru.chr12.1534 Acer truncatum HOM05D002165 ORTHO05D001531 3.8e-10 68.2 87 48.3
Atru.chr12.1536 Acer truncatum HOM05D002165 ORTHO05D001531 3.8e-10 68.2 87 48.3
PGR083G0845 Punica granatum HOM05D002165 ORTHO05D001531 6.4e-10 67.4 84 50.0
Manes.03G213400 Manihot esculenta HOM05D002165 ORTHO05D001531 1.1e-09 66.6 83 48.2
Sc16g0009410 Simmondsia chinensis HOM05D002165 ORTHO05D001531 1.1e-09 66.6 83 48.2
Lj6g0008561 Lotus japonicus HOM05D002165 ORTHO05D001531 1.4e-09 66.2 82 50.0
Manes.15G075800 Manihot esculenta HOM05D002165 ORTHO05D001531 1.9e-09 65.9 90 45.6
GSVIVG01017704001 Vitis vinifera HOM05D002165 ORTHO05D001531 2.4e-09 65.5 77 53.2
Prupe.6G304300 Prunus persica HOM05D002165 ORTHO05D001531 3.2e-09 65.1 90 44.4
RcHm_v2.0_Chr1g0321401 Rosa chinensis HOM05D002165 ORTHO05D001531 3.2e-09 65.1 82 47.6
CsaV3_6G002670 Cucumis sativus L. HOM05D002165 ORTHO05D001531 5.4e-09 64.3 90 45.6
Eucgr.H01333 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.4e-09 64.3 83 49.4
Potri.013G001800 Populus trichocarpa HOM05D002165 ORTHO05D001531 5.4e-09 64.3 84 50.0
Potri.013G001900 Populus trichocarpa HOM05D002165 ORTHO05D001531 5.4e-09 64.3 84 50.0
Potri.013G002000 Populus trichocarpa HOM05D002165 ORTHO05D001531 5.4e-09 64.3 84 50.0
GSVIVG01017705001 Vitis vinifera HOM05D002165 ORTHO05D001531 5.4e-09 64.3 77 51.9
GSVIVG01017706001 Vitis vinifera HOM05D002165 ORTHO05D001531 5.4e-09 64.3 77 51.9
Sabra13G0001400 Salix brachista HOM05D002165 ORTHO05D001531 7.1e-09 63.9 82 51.2
Sabra13G0005300 Salix brachista HOM05D002165 ORTHO05D001531 7.1e-09 63.9 82 45.1
Ca_02322_v3 Cicer arietinum L. HOM05D002165 ORTHO05D001531 9.3e-09 63.5 82 48.8
Ca_30364_v3 Cicer arietinum L. HOM05D002165 ORTHO05D001531 9.3e-09 63.5 82 48.8
FvH4_6g08530 Fragaria vesca HOM05D002165 ORTHO05D001531 9.3e-09 63.5 82 45.1
FAN14G5435 Fragaria x ananassa HOM05D002165 ORTHO05D001531 9.3e-09 63.5 82 45.1
Glyma.13G117400 Glycine max HOM05D002165 ORTHO05D001531 9.3e-09 63.5 83 49.4
Nn4g25284 Nelumbo nucifera HOM05D002165 ORTHO05D001531 9.3e-09 63.5 83 47.0
FAN05G4164 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.2e-08 63.2 82 45.1
CSS0027376 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 1.6e-08 62.8 66 47.0
ClCG00G002170 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.6e-08 62.8 91 44.0
ClCG08G002310 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.6e-08 62.8 91 44.0
ClCG08G002360 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.6e-08 62.8 91 44.0
ECA240G0866 Erigeron canadensis HOM05D002165 ORTHO05D001531 1.6e-08 62.8 65 47.7
Prupe.6G304200 Prunus persica HOM05D002165 ORTHO05D001531 1.6e-08 62.8 90 44.4
Ciclev10013801m.g Citrus clementina HOM05D002165 ORTHO05D001531 2.1e-08 62.4 82 50.0
Glyma.17G042500 Glycine max HOM05D002165 ORTHO05D001531 2.1e-08 62.4 83 50.6
TWI12G1307 Tripterygium wilfordii HOM05D002165 ORTHO05D001531 2.1e-08 62.4 89 50.6
Actinidia17737 Actinidia chinensis HOM05D002165 ORTHO05D001531 2.7e-08 62.0 75 45.3
MELO3C025020.2 Cucumis melo HOM05D002165 ORTHO05D001531 2.7e-08 62.0 91 46.2
Eucgr.H01323 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.7e-08 62.0 62 59.7
FAN02G1676 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.7e-08 62.0 82 43.9
FAN09G0584 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.7e-08 62.0 82 43.9
Glyma.15G185600 Glycine max HOM05D002165 ORTHO05D001531 2.7e-08 62.0 51 58.8
MELO3C025017.2 Cucumis melo HOM05D002165 ORTHO05D001531 3.5e-08 61.6 90 44.4
Gohir.D13G184400 Gossypium hirsutum HOM05D002165 ORTHO05D001531 4.6e-08 61.2 80 50.0
Gorai.013G210100 Gossypium raimondii HOM05D002165 ORTHO05D001531 4.6e-08 61.2 80 50.0
Phvul.003G124200 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 4.6e-08 61.2 83 49.4
Glyma.15G185700 Glycine max HOM05D002165 ORTHO05D001531 6.0e-08 60.8 82 47.6
Gohir.A02G059800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 6.0e-08 60.8 78 53.8
Gohir.D02G065400 Gossypium hirsutum HOM05D002165 ORTHO05D001531 6.0e-08 60.8 78 53.8
Gorai.005G074100 Gossypium raimondii HOM05D002165 ORTHO05D001531 6.0e-08 60.8 78 53.8
Gohir.A13G177800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 1.0e-07 60.1 80 50.0
MD04G1186400 Malus domestica HOM05D002165 ORTHO05D001531 1.0e-07 60.1 92 47.8
Sabra13G0001300 Salix brachista HOM05D002165 ORTHO05D001531 1.0e-07 60.1 82 45.1
CsaV3_6G002640 Cucumis sativus L. HOM05D002165 ORTHO05D001531 1.3e-07 59.7 91 45.1
Lalb_Chr07g0181571 Lupinus albus HOM05D002165 ORTHO05D001531 1.3e-07 59.7 83 48.2
CiPaw.02G068700 Carya illinoinensis HOM05D002165 ORTHO05D001531 2.3e-07 58.9 83 43.4
Glyma.09G080700 Glycine max HOM05D002165 ORTHO05D001531 2.3e-07 58.9 82 46.3
Medtr2g044970 Medicago truncatula HOM05D002165 ORTHO05D001531 2.3e-07 58.9 82 48.8
Psat4g020920 Pisum sativum HOM05D002165 ORTHO05D001531 2.3e-07 58.9 82 46.3
HPP92_017956 Vanilla planifolia HOM05D025205 ORTHO05D001531 2.3e-07 58.9 85 41.2
AUR62000479 Chenopodium quinoa HOM05D002165 ORTHO05D001531 3.0e-07 58.5 61 47.5
AUR62006822 Chenopodium quinoa HOM05D002165 ORTHO05D001531 3.0e-07 58.5 61 47.5
Ciclev10006471m.g Citrus clementina HOM05D002165 ORTHO05D001531 3.9e-07 58.2 70 48.6
TPR.G29438 Trifolium pratense HOM05D002165 ORTHO05D001531 3.9e-07 58.2 76 51.3
GSVIVG01017707001 Vitis vinifera HOM05D002165 ORTHO05D001531 3.9e-07 58.2 77 49.4
MELO3C025018.2 Cucumis melo HOM05D002165 ORTHO05D001531 5.1e-07 57.8 90 45.6
Psat1g017000 Pisum sativum HOM05D002165 ORTHO05D001531 5.1e-07 57.8 82 47.6
Thecc.04G314700 Theobroma cacao HOM05D002165 ORTHO05D001531 5.1e-07 57.8 78 50.0
CiPaw.01G127300 Carya illinoinensis HOM05D002165 ORTHO05D001531 6.6e-07 57.4 71 49.3
Dinv30951 Davidia involucrata HOM05D002165 ORTHO05D001531 6.6e-07 57.4 82 45.1
Lsat_1_v5_gn_7_63540 Lactuca sativa HOM05D002165 ORTHO05D001531 6.6e-07 57.4 65 46.2
Potri.005G002500 Populus trichocarpa HOM05D002165 ORTHO05D001531 6.6e-07 57.4 85 44.7
Potri.005G002600 Populus trichocarpa HOM05D002165 ORTHO05D001531 6.6e-07 57.4 85 44.7
ClCG03G017890 Citrullus lanatus HOM05D002165 ORTHO05D001531 8.7e-07 57.0 96 42.7
CsaV3_6G002630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 8.7e-07 57.0 90 45.6
Gohir.A09G242300 Gossypium hirsutum HOM05D002165 ORTHO05D001531 8.7e-07 57.0 81 46.9
Gohir.D09G243000 Gossypium hirsutum HOM05D002165 ORTHO05D001531 8.7e-07 57.0 81 46.9
Gorai.006G266800 Gossypium raimondii HOM05D002165 ORTHO05D001531 8.7e-07 57.0 81 46.9
AUR62023661 Chenopodium quinoa HOM05D002165 ORTHO05D001531 1.1e-06 56.6 45 60.0
ECA240G3242 Erigeron canadensis HOM05D002165 ORTHO05D001531 1.1e-06 56.6 65 47.7
MD13G1137400 Malus domestica HOM05D002165 ORTHO05D001531 1.1e-06 56.6 79 48.1
Rhsim11G0104900 Rhododendron simsii HOM05D002165 ORTHO05D001531 1.1e-06 56.6 96 43.8
Sed0009609 Sechium edule HOM05D002165 ORTHO05D001531 1.1e-06 56.6 83 42.2
Ciclev10013684m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.5e-06 56.2 78 47.4
MELO3C015240.2 Cucumis melo HOM05D002165 ORTHO05D001531 1.5e-06 56.2 94 42.6
Migut.N00975 Erythranthe guttata HOM05D002165 ORTHO05D001531 1.5e-06 56.2 67 49.3
Psat1g016840 Pisum sativum HOM05D002165 ORTHO05D001531 1.5e-06 56.2 82 46.3
Sabra10G0003300 Salix brachista HOM05D002165 ORTHO05D001531 1.5e-06 56.2 59 49.2
Sed0018176 Sechium edule HOM05D002165 ORTHO05D001531 1.5e-06 56.2 85 44.7
Thecc.05G329700 Theobroma cacao HOM05D002165 ORTHO05D001531 1.5e-06 56.2 82 46.3
AUR62002532 Chenopodium quinoa HOM05D002165 ORTHO05D001531 2.5e-06 55.5 45 57.8
Sed0022046 Sechium edule HOM05D002165 ORTHO05D001531 2.5e-06 55.5 85 44.7
CSS0004014 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 3.3e-06 55.1 81 38.3
DCAR_001885 Daucus carota HOM05D002165 ORTHO05D001531 3.3e-06 55.1 66 50.0
Phvul.009G221200 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 3.3e-06 55.1 44 61.4
Phvul.009G221300 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 3.3e-06 55.1 44 61.4
Sabra05G0014100 Salix brachista HOM05D002165 ORTHO05D001531 3.3e-06 55.1 84 41.7
CsaV3_1G038050 Cucumis sativus L. HOM05D002165 ORTHO05D001531 4.3e-06 54.7 94 42.6
DCAR_001886 Daucus carota HOM05D002165 ORTHO05D001531 4.3e-06 54.7 67 47.8
Lalb_Chr11g0073691 Lupinus albus HOM05D002165 ORTHO05D001531 4.3e-06 54.7 74 45.9
Sed0011742 Sechium edule HOM05D002165 ORTHO05D001531 4.3e-06 54.7 93 41.9
DCAR_001884 Daucus carota HOM05D002165 ORTHO05D001531 5.6e-06 54.3 66 47.0
Glyma.09G080800 Glycine max HOM05D002165 ORTHO05D001531 5.6e-06 54.3 41 63.4
EL10Ac3g06229 Beta vulgaris HOM05D002165 ORTHO05D001531 7.3e-06 53.9 67 44.8
BcaB06g25836 Brassica carinata HOM05D002165 ORTHO05D001531 7.3e-06 53.9 83 38.6
DCAR_002291 Daucus carota HOM05D002165 ORTHO05D001531 7.3e-06 53.9 67 49.3
Medtr4g124220 Medicago truncatula HOM05D002165 ORTHO05D001531 7.3e-06 53.9 44 59.1
Phvul.009G221100 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 7.3e-06 53.9 84 38.1
Sed0026735 Sechium edule HOM05D002165 ORTHO05D001531 7.3e-06 53.9 76 46.1


User provided reference genes

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