Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p29050 Brassica napus HOM05D000929 ORTHO05D028144 5.9e-26 120.2 64 100.0
BraA01t02991Z Brassica rapa HOM05D000929 ORTHO05D028144 5.9e-26 120.2 64 100.0
BolC1t03636H Brassica oleracea HOM05D000929 ORTHO05D003255 3.8e-25 117.5 64 96.9
BcaB04g20249 Brassica carinata HOM05D000929 ORTHO05D003255 4.3e-24 114.0 62 96.8
Sp2g04530 Schrenkiella parvula HOM05D000929 ORTHO05D003255 8.0e-23 109.8 62 93.5
C01p36770 Brassica napus HOM05D000929 ORTHO05D028144 1.0e-22 109.4 58 98.3
Thhalv10023264m.g Eutrema salsugineum HOM05D000929 ORTHO05D003255 1.5e-21 105.5 62 88.7
AT1G60070 Arabidopsis thaliana HOM05D000929 ORTHO05D003255 1.3e-20 102.4 62 85.5
AL2G16620 Arabidopsis lyrata HOM05D000929 ORTHO05D003255 4.9e-20 100.5 63 87.3
CARHR052880 Cardamine hirsuta HOM05D000929 ORTHO05D003255 6.4e-20 100.1 63 85.7
Aa31LG2G10170 Aethionema arabicum HOM05D000929 ORTHO05D003255 1.1e-19 99.4 63 85.7
Carub.0002s0518 Capsella rubella HOM05D000929 ORTHO05D003255 1.1e-19 99.4 62 87.1
THA.LOC104819479 Tarenaya hassleriana HOM05D000929 ORTHO05D003255 1.6e-18 95.5 61 82.0
Ciclev10030683m.g Citrus clementina HOM05D000929 ORTHO05D003255 8.6e-17 89.7 60 80.0
Medtr5g034780 Medicago truncatula HOM05D000929 ORTHO05D003255 1.1e-16 89.4 62 74.2
Cpa.g.sc69.3 Carica papaya HOM05D000929 ORTHO05D003255 1.9e-16 88.6 63 74.6
Dinv31017 Davidia involucrata HOM05D000929 ORTHO05D003255 1.9e-16 88.6 63 74.6
Nn4g22838 Nelumbo nucifera HOM05D000929 ORTHO05D003255 2.5e-16 88.2 63 74.6
Eucgr.B03952 Eucalyptus grandis HOM05D000929 ORTHO05D003255 4.3e-16 87.4 63 73.0
Nn3g16925 Nelumbo nucifera HOM05D000929 ORTHO05D003255 4.3e-16 87.4 63 74.6
Atru.chr11.1995 Acer truncatum HOM05D000929 ORTHO05D003255 5.6e-16 87.0 63 74.6
Ca_04610_v3 Cicer arietinum L. HOM05D000929 ORTHO05D003255 5.6e-16 87.0 62 72.6
Lalb_Chr09g0326431 Lupinus albus HOM05D000929 ORTHO05D003255 5.6e-16 87.0 62 74.2
CiPaw.05G147600 Carya illinoinensis HOM05D000929 ORTHO05D003255 9.5e-16 86.3 63 74.6
ECA246G2227 Erigeron canadensis HOM05D000929 ORTHO05D003255 9.5e-16 86.3 63 73.0
TWI36G1374 Tripterygium wilfordii HOM05D000929 ORTHO05D003255 9.5e-16 86.3 60 75.0
CSS0044632 Camellia sinensis var. sinensis HOM05D000929 ORTHO05D003255 1.2e-15 85.9 63 69.8
Dinv24884 Davidia involucrata HOM05D000929 ORTHO05D003255 1.2e-15 85.9 63 73.0
Haze_12151 Corylus avellana HOM05D000929 ORTHO05D003255 1.6e-15 85.5 63 73.0
Lj2g0010189 Lotus japonicus HOM05D000929 ORTHO05D003255 2.1e-15 85.1 62 72.6
QL03p061898 Quercus lobata HOM05D000929 ORTHO05D003255 2.1e-15 85.1 63 71.4
TWI18G0795 Tripterygium wilfordii HOM05D000929 ORTHO05D003255 2.1e-15 85.1 60 73.3
arahy.Tifrunner.gnm1.ann1.0K9FD0 Arachis hypogaea HOM05D000929 ORTHO05D003255 2.8e-15 84.7 62 72.6
arahy.Tifrunner.gnm1.ann1.3RZB0U Arachis hypogaea HOM05D000929 ORTHO05D003255 2.8e-15 84.7 62 72.6
ClCG05G025180 Citrullus lanatus HOM05D000929 ORTHO05D003255 2.8e-15 84.7 62 64.5
Gohir.A01G141400 Gossypium hirsutum HOM05D000929 ORTHO05D003255 2.8e-15 84.7 63 71.4
Phvul.002G072600 Phaseolus vulgaris HOM05D000929 ORTHO05D003255 2.8e-15 84.7 62 71.0
EL10Ac6g13647 Beta vulgaris HOM05D000929 ORTHO05D003255 3.6e-15 84.3 59 72.9
Gohir.D01G132800 Gossypium hirsutum HOM05D000929 ORTHO05D003255 3.6e-15 84.3 63 71.4
Cfa009113 Carpinus fangiana HOM05D000929 ORTHO05D003255 4.7e-15 84.0 63 71.4
Lalb_Chr05g0217021 Lupinus albus HOM05D000929 ORTHO05D003255 4.7e-15 84.0 62 69.4
Lalb_Chr16g0382371 Lupinus albus HOM05D000929 ORTHO05D003255 4.7e-15 84.0 62 69.4
THA.LOC104822131 Tarenaya hassleriana HOM05D000929 ORTHO05D003255 4.7e-15 84.0 61 72.1
vmacro01188 Vaccinium macrocarpon HOM05D000929 ORTHO05D003255 4.7e-15 84.0 63 66.7
vmacro12520 Vaccinium macrocarpon HOM05D000929 ORTHO05D003255 4.7e-15 84.0 63 66.7
CiPaw.06G073700 Carya illinoinensis HOM05D000929 ORTHO05D003255 6.2e-15 83.6 60 75.0
AUR62014001 Chenopodium quinoa HOM05D000929 ORTHO05D003255 6.2e-15 83.6 59 74.6
MELO3C012011.2 Cucumis melo HOM05D000929 ORTHO05D003255 6.2e-15 83.6 62 62.9
Duzib268G0481 Durio zibethinus HOM05D000929 ORTHO05D003255 6.2e-15 83.6 63 71.4
COL.COLO4_19524 Corchorus olitorius HOM05D000929 ORTHO05D003255 8.0e-15 83.2 63 71.4
CsaV3_5G031710 Cucumis sativus L. HOM05D000929 ORTHO05D003255 8.0e-15 83.2 62 62.9
Glyma.02G033300 Glycine max HOM05D000929 ORTHO05D003255 8.0e-15 83.2 59 72.9
Manes.01G198500 Manihot esculenta HOM05D000929 ORTHO05D003255 8.0e-15 83.2 63 73.0
PGR119G1498 Punica granatum HOM05D000929 ORTHO05D003255 8.0e-15 83.2 63 69.8
TPR.G31964 Trifolium pratense HOM05D000929 ORTHO05D003255 8.0e-15 83.2 62 67.7
Lj3C1051G4 Lonicera japonica HOM05D000929 ORTHO05D003255 1.0e-14 82.8 60 75.0
Psat2g105480 Pisum sativum HOM05D000929 ORTHO05D003255 1.0e-14 82.8 62 69.4
GSVIVG01020209001 Vitis vinifera HOM05D000929 ORTHO05D003255 1.0e-14 82.8 63 68.3
Gorai.002G164400 Gossypium raimondii HOM05D000929 ORTHO05D003255 1.4e-14 82.4 63 69.8
Nitab4.5_0000052g0340 Nicotiana tabacum HOM05D000929 ORTHO05D003255 1.4e-14 82.4 63 69.8
Nitab4.5_0008887g0020 Nicotiana tabacum HOM05D000929 ORTHO05D003255 1.4e-14 82.4 63 69.8
Peaxi162Scf00421g00122 Petunia axillaris HOM05D000929 ORTHO05D003255 1.4e-14 82.4 63 69.8
Hund05973 Selenicereus undatus HOM05D000929 ORTHO05D003255 1.4e-14 82.4 63 68.3
Solyc05g005780.3 Solanum lycopersicum HOM05D000929 ORTHO05D003255 1.4e-14 82.4 63 69.8
Sopen05g001780 Solanum pennellii HOM05D000929 ORTHO05D003255 1.4e-14 82.4 63 69.8
PGSC0003DMG400004116 Solanum tuberosum HOM05D000929 ORTHO05D003255 1.4e-14 82.4 63 69.8
Gohir.D02G163900 Gossypium hirsutum HOM05D000929 ORTHO05D003255 1.8e-14 82.0 63 68.3
Gorai.005G183900 Gossypium raimondii HOM05D000929 ORTHO05D003255 1.8e-14 82.0 63 68.3
Potri.016G104700 Populus trichocarpa HOM05D000929 ORTHO05D003255 1.8e-14 82.0 63 71.4
TPR.G29172 Trifolium pratense HOM05D000929 ORTHO05D003255 1.8e-14 82.0 62 69.4
CANSAT01G0657 Cannabis sativa HOM05D000929 ORTHO05D003255 2.3e-14 81.6 58 74.1
vmacro12522 Vaccinium macrocarpon HOM05D000929 ORTHO05D003255 2.3e-14 81.6 63 65.1
Glyma.01G032100 Glycine max HOM05D000929 ORTHO05D003255 3.1e-14 81.3 60 71.7
Sed0009259 Sechium edule HOM05D000929 ORTHO05D003255 3.1e-14 81.3 62 62.9
Sc04g0009010 Simmondsia chinensis HOM05D000929 ORTHO05D003255 3.1e-14 81.3 63 66.7
Rhsim12G0047900 Rhododendron simsii HOM05D000929 ORTHO05D003255 4.0e-14 80.9 63 65.1
TAR371G0396 Trochodendron aralioides HOM05D000929 ORTHO05D003255 4.0e-14 80.9 63 66.7
Sed0022852 Sechium edule HOM05D000929 ORTHO05D003255 5.2e-14 80.5 61 62.3
Thecc.02G246200 Theobroma cacao HOM05D000929 ORTHO05D003255 5.2e-14 80.5 64 70.3
Cc11_g14450 Coffea canephora HOM05D000929 ORTHO05D003255 6.8e-14 80.1 63 65.1
TAR629G2238 Trochodendron aralioides HOM05D000929 ORTHO05D003255 6.8e-14 80.1 59 72.9
Gohir.A03G141000 Gossypium hirsutum HOM05D000929 ORTHO05D003255 8.9e-14 79.7 63 66.7
CSS0042322 Camellia sinensis var. sinensis HOM05D000929 ORTHO05D003255 1.2e-13 79.3 63 68.3
arahy.Tifrunner.gnm1.ann1.095X5J Arachis hypogaea HOM05D000929 ORTHO05D003255 1.5e-13 79.0 62 67.7
arahy.Tifrunner.gnm1.ann1.MKS3V3 Arachis hypogaea HOM05D000929 ORTHO05D003255 1.5e-13 79.0 62 67.7
Nitab4.5_0000925g0040 Nicotiana tabacum HOM05D000929 ORTHO05D003255 1.5e-13 79.0 60 71.7
Oeu001748.1 Olea europaea HOM05D000929 ORTHO05D003255 1.5e-13 79.0 63 66.7
Sc11g0001280 Simmondsia chinensis HOM05D000929 ORTHO05D003255 1.5e-13 79.0 63 65.1
HanXRQChr17g0570221 Helianthus annuus HOM05D000929 ORTHO05D003255 2.0e-13 78.6 63 68.3
Potri.006G092800 Populus trichocarpa HOM05D000929 ORTHO05D003255 2.0e-13 78.6 63 68.3
CSS0022003 Camellia sinensis var. sinensis HOM05D000929 ORTHO05D003255 2.6e-13 78.2 63 66.7
Nitab4.5_0000031g0020 Nicotiana tabacum HOM05D000929 ORTHO05D003255 3.4e-13 77.8 60 70.0
Oeu039476.1 Olea europaea HOM05D000929 ORTHO05D003255 5.8e-13 77.0 63 65.1
Actinidia01711 Actinidia chinensis HOM05D000929 ORTHO05D003255 7.5e-13 76.6 63 63.5
Prupe.1G256500 Prunus persica HOM05D000929 ORTHO05D003255 7.5e-13 76.6 63 63.5
Hund25335 Selenicereus undatus HOM05D000929 ORTHO05D003255 7.5e-13 76.6 63 66.7
BcaB03g14129 Brassica carinata HOM05D000929 ORTHO05D003255 9.8e-13 76.3 61 72.1
BcaB07g32366 Brassica carinata HOM05D000929 ORTHO05D003255 9.8e-13 76.3 63 71.4
A09p40930 Brassica napus HOM05D000929 ORTHO05D003255 9.8e-13 76.3 60 73.3
C05p23090 Brassica napus HOM05D000929 ORTHO05D003255 9.8e-13 76.3 60 73.3
BolC5t31007H Brassica oleracea HOM05D000929 ORTHO05D003255 9.8e-13 76.3 60 73.3
BraA07t29122Z Brassica rapa HOM05D000929 ORTHO05D003255 9.8e-13 76.3 61 72.1
BraA09t39583Z Brassica rapa HOM05D000929 ORTHO05D003255 9.8e-13 76.3 60 73.3
Thhalv10006767m.g Eutrema salsugineum HOM05D000929 ORTHO05D003255 9.8e-13 76.3 63 71.4
Sp1g21250 Schrenkiella parvula HOM05D000929 ORTHO05D003255 9.8e-13 76.3 63 71.4
MSTRG.606 Avicennia marina HOM05D000929 ORTHO05D003255 1.3e-12 75.9 63 65.1
Lalb_Chr05g0227871 Lupinus albus HOM05D000929 ORTHO05D003255 1.3e-12 75.9 62 64.5
PSO063G4361 Papaver somniferum HOM05D000929 ORTHO05D003255 1.3e-12 75.9 63 63.5
PSO832G0605 Papaver somniferum HOM05D000929 ORTHO05D003255 1.3e-12 75.9 63 63.5
Psat4g127600 Pisum sativum HOM05D000929 ORTHO05D003255 1.7e-12 75.5 66 60.6
BcaC06g35060 Brassica carinata HOM05D000929 ORTHO05D003255 2.2e-12 75.1 61 70.5
A07p13710 Brassica napus HOM05D000929 ORTHO05D003255 2.2e-12 75.1 61 70.5
C07p20170 Brassica napus HOM05D000929 ORTHO05D003255 2.2e-12 75.1 61 70.5
BolC7t42538H Brassica oleracea HOM05D000929 ORTHO05D003255 2.2e-12 75.1 61 70.5
Duzib251G0010 Durio zibethinus HOM05D000929 ORTHO05D003255 2.2e-12 75.1 63 66.7
Solyc04g025870.4 Solanum lycopersicum HOM05D000929 ORTHO05D003255 2.2e-12 75.1 60 70.0
Sopen04g013480 Solanum pennellii HOM05D000929 ORTHO05D003255 2.2e-12 75.1 60 70.0
Migut.E00152 Erythranthe guttata HOM05D000929 ORTHO05D003255 2.9e-12 74.7 63 65.1
unitig_22.g6932 Utricularia gibba HOM05D000929 ORTHO05D003255 2.9e-12 74.7 63 65.1
Gohir.A12G052100 Gossypium hirsutum HOM05D000929 ORTHO05D003255 3.7e-12 74.3 64 67.2
Gohir.D12G050500 Gossypium hirsutum HOM05D000929 ORTHO05D003255 3.7e-12 74.3 64 65.6
Gorai.008G053700 Gossypium raimondii HOM05D000929 ORTHO05D003255 3.7e-12 74.3 64 65.6
MD16G1089500 Malus domestica HOM05D000929 ORTHO05D003255 3.7e-12 74.3 63 60.3
SGA_v2.0_scaffold165G38266 Striga asiatica HOM05D000929 ORTHO05D003255 4.9e-12 73.9 63 65.1
Actinidia00021 Actinidia chinensis HOM05D003203 ORTHO05D003526 6.4e-12 73.6 63 60.3
Glyma.08G289100 Glycine max HOM05D000929 ORTHO05D003255 6.4e-12 73.6 62 61.3
CAN.G1082.6 Capsicum annuum HOM05D000929 ORTHO05D003255 8.3e-12 73.2 60 66.7
DCAR_031089 Daucus carota HOM05D000929 ORTHO05D003255 8.3e-12 73.2 63 63.5
MD13G1089300 Malus domestica HOM05D000929 ORTHO05D003255 8.3e-12 73.2 63 60.3
Sabra06G0070500 Salix brachista HOM05D000929 ORTHO05D003255 8.3e-12 73.2 63 63.5
Ca_22750_v3 Cicer arietinum L. HOM05D000929 ORTHO05D003255 1.1e-11 72.8 60 66.7
Ca_22755_v3 Cicer arietinum L. HOM05D000929 ORTHO05D028144 1.1e-11 72.8 60 66.7
Manes.05G088300 Manihot esculenta HOM05D000929 ORTHO05D003255 1.1e-11 72.8 63 66.7
SalBow8G4564 Salvia bowleyana HOM05D000929 ORTHO05D003255 1.1e-11 72.8 55 72.7
DCAR_024137 Daucus carota HOM05D000929 ORTHO05D003255 1.4e-11 72.4 63 63.5
HanXRQChr12g0383371 Helianthus annuus HOM05D000929 ORTHO05D003255 1.4e-11 72.4 61 68.9
Lj6C803G6 Lonicera japonica HOM05D000929 ORTHO05D003255 1.9e-11 72.0 64 64.1
CAN.G205.10 Capsicum annuum HOM05D000929 ORTHO05D003255 2.4e-11 71.6 63 61.9
Migut.L01430 Erythranthe guttata HOM05D000929 ORTHO05D003255 2.4e-11 71.6 63 60.3
Medtr8g063690 Medicago truncatula HOM05D000929 ORTHO05D003255 3.2e-11 71.2 60 65.0
SalBow2G0004 Salvia bowleyana HOM05D000929 ORTHO05D003255 3.2e-11 71.2 63 63.5
SalBow2G3165 Salvia bowleyana HOM05D000929 ORTHO05D003255 3.2e-11 71.2 63 63.5
Carub.0001s2339 Capsella rubella HOM05D000929 ORTHO05D003255 4.1e-11 70.9 64 64.1
AL1G37650 Arabidopsis lyrata HOM05D000929 ORTHO05D003255 5.4e-11 70.5 61 65.6
ECA234G1358 Erigeron canadensis HOM05D000929 ORTHO05D003255 1.2e-10 69.3 63 60.3
Oeu027459.1 Olea europaea HOM05D000929 ORTHO05D003255 2.0e-10 68.6 63 60.3
CDE02G0944 Ceratophyllum demersum HOM05D000929 ORTHO05D003255 3.5e-10 67.8 60 60.0
VMungo0251G0590 Vigna mungo HOM05D000929 ORTHO05D003255 3.5e-10 67.8 59 62.7
AT1G23900 Arabidopsis thaliana HOM05D000929 ORTHO05D003255 4.6e-10 67.4 63 61.9
FAN17G2555 Fragaria x ananassa HOM05D000929 ORTHO05D003255 4.6e-10 67.4 63 54.0
Phvul.003G053300 Phaseolus vulgaris HOM05D000929 ORTHO05D003255 4.6e-10 67.4 62 58.1
TAR622G1265 Trochodendron aralioides HOM05D000929 ORTHO05D003255 4.6e-10 67.4 63 60.3
CDE01G0215 Ceratophyllum demersum HOM05D000929 ORTHO05D003255 6.0e-10 67.0 60 58.3
FvH4_4g34830 Fragaria vesca HOM05D000929 ORTHO05D003255 2.3e-09 65.1 63 52.4
SGA_v2.0_scaffold87G27014 Striga asiatica HOM05D000929 ORTHO05D003255 2.3e-09 65.1 65 58.5
Aqoxy3G00960 Aquilegia oxysepala HOM05D000929 ORTHO05D003255 5.0e-09 63.9 64 57.8
ATR1149G054 Amborella trichopoda HOM05D000929 ORTHO05D003255 5.6e-08 60.5 70 55.7
RcHm_v2.0_Chr4g0444171 Rosa chinensis HOM05D000929 ORTHO05D003255 2.8e-07 58.2 64 50.0
Zm00001eb375520 Zea mays HOM05D000929 ORTHO05D003255 4.7e-07 57.4 67 55.2
Os06g0167100 Oryza sativa ssp. japonica HOM05D000929 ORTHO05D003255 8.1e-07 56.6 67 52.2
Lsat_1_v5_gn_4_7040 Lactuca sativa HOM05D000929 ORTHO05D003255 2.3e-06 55.1 57 61.4
HanXRQChr12g0371361 Helianthus annuus HOM05D000929 ORTHO05D003255 8.9e-06 53.1 65 52.3


User provided reference genes

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