Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.1e-63 246.5 127 100.0
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.1e-63 246.5 127 100.0
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 4.2e-47 191.4 136 77.9
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 4.2e-47 191.4 136 77.9
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 2.1e-46 189.1 136 77.2
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 9.0e-42 173.7 98 91.8
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 9.0e-42 173.7 136 73.5
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 9.0e-42 173.7 98 91.8
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 9.0e-42 173.7 98 91.8
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 9.0e-42 173.7 136 73.5
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.2e-41 173.3 98 90.8
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 1.5e-41 172.9 98 89.8
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 1.5e-41 172.9 136 72.1
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.5e-41 172.9 136 72.1
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 3.4e-41 171.8 98 89.8
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 4.5e-41 171.4 98 90.8
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 4.5e-41 171.4 98 89.8
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 1.1e-39 166.8 98 86.7
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 9.3e-39 163.7 98 85.7
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 6.0e-38 161.0 98 81.6
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 7.9e-38 160.6 105 75.2
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 1.0e-37 160.2 98 81.6
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 1.3e-37 159.8 98 81.6
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 1.8e-37 159.5 98 80.6
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 1.8e-37 159.5 98 79.6
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.8e-37 159.5 98 79.6
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 1.8e-37 159.5 98 80.6
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 2.3e-37 159.1 98 80.6
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 2.3e-37 159.1 98 79.6
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 3.0e-37 158.7 98 80.6
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 3.9e-37 158.3 98 78.6
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 5.1e-37 157.9 98 78.6
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 5.1e-37 157.9 98 79.6
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 5.1e-37 157.9 98 79.6
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 6.7e-37 157.5 98 79.6
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 6.7e-37 157.5 98 79.6
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 6.7e-37 157.5 98 79.6
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 6.7e-37 157.5 98 79.6
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 8.7e-37 157.1 100 77.0
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 1.1e-36 156.8 98 77.6
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.1e-36 156.8 113 69.9
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.1e-36 156.8 101 75.2
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.5e-36 156.4 98 77.6
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.9e-36 156.0 100 78.0
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.5e-36 155.6 98 78.6
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 3.3e-36 155.2 98 77.6
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 4.3e-36 154.8 98 76.5
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 5.6e-36 154.5 100 76.0
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 5.6e-36 154.5 98 78.6
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 7.4e-36 154.1 112 70.5
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 7.4e-36 154.1 98 78.6
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 9.6e-36 153.7 98 76.5
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 9.6e-36 153.7 98 78.6
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 9.6e-36 153.7 98 78.6
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 9.6e-36 153.7 98 77.6
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.6e-35 152.9 98 76.5
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 1.6e-35 152.9 98 76.5
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 2.1e-35 152.5 98 74.5
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 2.1e-35 152.5 98 76.5
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 2.8e-35 152.1 98 78.6
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 3.7e-35 151.8 98 76.5
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 4.8e-35 151.4 98 76.5
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 4.8e-35 151.4 98 76.5
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 4.8e-35 151.4 98 75.5
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.8e-35 151.4 98 77.6
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 6.2e-35 151.0 98 76.5
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 6.2e-35 151.0 98 77.6
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 8.1e-35 150.6 98 74.5
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 8.1e-35 150.6 98 77.6
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.1e-34 150.2 98 74.5
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 1.1e-34 150.2 98 75.5
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.4e-34 149.8 98 74.5
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 1.4e-34 149.8 98 73.5
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.4e-34 149.8 113 66.4
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.4e-34 149.8 98 77.6
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 1.8e-34 149.4 98 73.5
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.8e-34 149.4 98 73.5
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 1.8e-34 149.4 98 74.5
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 2.4e-34 149.1 98 76.5
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 3.1e-34 148.7 98 74.5
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.1e-34 148.7 98 76.5
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 4.0e-34 148.3 98 73.5
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.0e-34 148.3 98 73.5
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 4.0e-34 148.3 98 75.5
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 6.9e-34 147.5 98 74.5
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 9.0e-34 147.1 98 73.5
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 9.0e-34 147.1 96 75.0
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 1.5e-33 146.4 98 73.5
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 1.5e-33 146.4 98 72.4
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.6e-33 145.6 98 72.4
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 3.4e-33 145.2 96 74.0
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 5.8e-33 144.4 98 72.4
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 5.8e-33 144.4 106 67.0
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 9.9e-33 143.7 98 74.5
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.2e-32 142.5 98 71.4
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 2.9e-32 142.1 105 70.5
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 2.9e-32 142.1 98 71.4
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 4.9e-32 141.4 90 75.6
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 6.4e-32 141.0 98 71.4
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 8.4e-32 140.6 98 73.5
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 1.1e-31 140.2 94 73.4
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 1.4e-31 139.8 98 68.4
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 1.4e-31 139.8 98 70.4
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 2.4e-31 139.0 98 67.3
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 7.1e-31 137.5 98 67.3
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 9.3e-31 137.1 134 64.2
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 9.3e-31 137.1 86 77.9
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 1.2e-30 136.7 98 68.4
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 2.1e-30 136.0 102 70.6
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 1.3e-29 133.3 102 69.6
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.8e-29 132.9 83 74.7
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 2.3e-29 132.5 101 70.3
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 2.3e-29 132.5 98 66.3
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 8.7e-29 130.6 100 67.0
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.1e-28 130.2 86 72.1
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.1e-28 130.2 98 66.3
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 1.1e-28 130.2 98 69.4
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 5.6e-28 127.9 82 73.2
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 5.3e-26 121.3 98 61.2
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 9.0e-26 120.6 98 64.3
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 1.5e-25 119.8 96 65.6
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.0e-25 119.4 78 74.4
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 2.0e-25 119.4 98 65.3
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 4.9e-24 114.8 88 64.8
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 8.4e-24 114.0 84 66.7
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 1.1e-23 113.6 98 60.2
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 5.5e-23 111.3 99 59.6
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 2.1e-22 109.4 99 58.6
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 2.7e-22 109.0 88 62.5
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 1.9e-20 102.8 93 57.0
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 2.5e-20 102.4 76 65.8
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 3.3e-20 102.1 81 60.5
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 7.4e-20 100.9 98 56.1
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.2e-19 99.4 61 77.0
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 6.3e-19 97.8 93 54.8
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 1.4e-18 96.7 87 56.3
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 4.1e-18 95.1 88 56.8
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 5.3e-18 94.7 61 73.8
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 6.9e-18 94.4 76 65.8
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 6.9e-18 94.4 90 53.3
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 9.0e-18 94.0 87 55.2
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 7.6e-17 90.9 89 56.2
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 1.0e-16 90.5 87 52.9
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 1.0e-16 90.5 98 53.1
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.7e-16 89.7 58 74.1
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.7e-16 89.7 98 49.0
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 2.9e-16 89.0 95 54.7
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.8e-16 88.6 95 49.5
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.4e-15 86.7 78 59.0
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 2.5e-15 85.9 58 67.2
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 3.2e-15 85.5 69 58.0
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 6.1e-14 81.3 92 46.7
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 3.9e-13 78.6 90 48.9
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 2.6e-09 65.9 69 49.3
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 5.5e-07 58.2 34 82.4
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 2.7e-06 55.8 34 76.5


User provided reference genes

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