Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p26240 Brassica napus HOM05D000349 ORTHO05D012642 4.4e-33 144.1 73 100.0
BraA01t02551Z Brassica rapa HOM05D000349 ORTHO05D012642 1.1e-31 139.4 73 97.3
A09p18450 Brassica napus HOM05D000349 ORTHO05D012642 1.8e-31 138.7 72 95.8
BraA02t07256Z Brassica rapa HOM05D000349 ORTHO05D012642 3.1e-31 137.9 72 94.4
C02p17560 Brassica napus HOM05D000349 ORTHO05D012642 1.2e-30 136.0 72 94.4
C04p29580 Brassica napus HOM05D000349 ORTHO05D001782 1.2e-30 136.0 72 94.4
A02p22530 Brassica napus HOM05D000349 ORTHO05D012642 1.6e-30 135.6 72 93.1
BolC2t07882H Brassica oleracea HOM05D000349 ORTHO05D012642 3.5e-30 134.4 72 93.1
A05p17290 Brassica napus HOM05D000349 ORTHO05D001782 4.5e-30 134.0 72 94.4
A08p07600 Brassica napus HOM05D000349 ORTHO05D012642 5.9e-30 133.7 72 91.7
A06p22580 Brassica napus HOM05D000349 ORTHO05D012642 2.9e-29 131.3 72 90.3
BolC5t33507H Brassica oleracea HOM05D000349 ORTHO05D012642 6.5e-29 130.2 72 88.9
BraA09t39039Z Brassica rapa HOM05D000349 ORTHO05D001782 6.1e-27 123.6 68 88.2
BraA10t42900Z Brassica rapa HOM05D000349 ORTHO05D001782 1.4e-26 122.5 73 86.3
BraA07t28047Z Brassica rapa HOM05D000349 ORTHO05D012642 6.8e-26 120.2 63 96.8
BcaC03g14329 Brassica carinata HOM05D000349 ORTHO05D012642 8.8e-26 119.8 64 92.2
BolC2t07888H Brassica oleracea HOM05D000349 ORTHO05D012642 1.5e-25 119.0 63 95.2
BolC3t16231H Brassica oleracea HOM05D000349 ORTHO05D001782 4.4e-25 117.5 60 95.0
BolC7t41972H Brassica oleracea HOM05D000349 ORTHO05D001782 1.3e-24 115.9 60 93.3
BcaC09g50608 Brassica carinata HOM05D000349 ORTHO05D001782 2.8e-24 114.8 63 92.1
C02p35050 Brassica napus HOM05D000349 ORTHO05D001782 9.1e-23 109.8 72 80.6
A02p15700 Brassica napus HOM05D000349 ORTHO05D040077 5.0e-21 104.0 62 90.3
BraA02t06631Z Brassica rapa HOM05D000349 ORTHO05D040077 5.0e-21 104.0 62 90.3
A06p15300 Brassica napus HOM05D000349 ORTHO05D012642 3.3e-20 101.3 55 94.5
BolC4t22750H Brassica oleracea HOM05D000349 ORTHO05D001782 3.3e-20 101.3 50 94.0
BolC4t22752H Brassica oleracea HOM05D000349 ORTHO05D001782 3.3e-20 101.3 50 94.0
A02p33540 Brassica napus HOM05D000349 ORTHO05D012642 1.0e-18 96.3 46 97.8
A06p31810 Brassica napus HOM05D000349 ORTHO05D012642 2.3e-18 95.1 46 97.8
A09p34180 Brassica napus HOM05D000349 ORTHO05D012642 2.3e-18 95.1 46 97.8
A10p07780 Brassica napus HOM05D000349 ORTHO05D012642 5.2e-18 94.0 46 95.7
A02p43460 Brassica napus HOM05D000349 ORTHO05D012642 6.8e-18 93.6 46 95.7
A05p10670 Brassica napus HOM05D000349 ORTHO05D012642 2.0e-17 92.0 46 95.7
A03p61300 Brassica napus HOM05D000349 ORTHO05D012642 7.5e-17 90.1 46 93.5
A06p27000 Brassica napus HOM05D000349 ORTHO05D101595 2.8e-16 88.2 46 91.3
A05p18440 Brassica napus HOM05D000349 ORTHO05D100331 1.2e-14 82.8 46 87.0
A09p21450 Brassica napus HOM05D000349 ORTHO05D100329 1.0e-13 79.7 41 90.2
A10p02230 Brassica napus HOM05D000349 ORTHO05D102676 1.9e-12 75.5 46 82.6
BcaC01g03450 Brassica carinata HOM05D000349 ORTHO05D001782 1.6e-11 72.4 54 66.7
BraA04t16698Z Brassica rapa HOM05D000349 ORTHO05D001782 1.8e-10 68.9 31 96.8
BraA06t25151Z Brassica rapa HOM05D000349 ORTHO05D001782 3.1e-10 68.2 30 100.0
A09p31860 Brassica napus HOM05D000349 ORTHO05D001782 5.2e-10 67.4 31 93.5
A04p09040 Brassica napus HOM05D000349 ORTHO05D001782 1.5e-09 65.9 31 93.5
BraA04t16599Z Brassica rapa HOM05D000349 ORTHO05D001782 1.5e-09 65.9 31 93.5
A09p21760 Brassica napus HOM05D000349 ORTHO05D001782 3.4e-09 64.7 31 90.3
BraA03t12427Z Brassica rapa HOM05D000349 ORTHO05D001782 3.4e-09 64.7 31 87.1
A03p32580 Brassica napus HOM05D000349 ORTHO05D001782 4.4e-09 64.3 31 83.9
BraA05t21604Z Brassica rapa HOM05D000349 ORTHO05D001782 7.5e-09 63.5 28 96.4
A07p03890 Brassica napus HOM05D000349 ORTHO05D001782 9.8e-09 63.2 31 90.3
BraA07t28181Z Brassica rapa HOM05D000349 ORTHO05D001782 9.8e-09 63.2 31 90.3
BcaC01g04519 Brassica carinata HOM05D000349 ORTHO05D001782 1.7e-08 62.4 31 80.6
BcaC02g10371 Brassica carinata HOM05D000349 ORTHO05D001782 1.7e-08 62.4 31 83.9
C03p39660 Brassica napus HOM05D000349 ORTHO05D001782 1.7e-08 62.4 31 80.6
C02p26770 Brassica napus HOM05D007754 ORTHO05D100605 2.9e-08 61.6 69 53.6
C07p14700 Brassica napus HOM05D000349 ORTHO05D001782 2.9e-08 61.6 31 87.1
BraA09t37779Z Brassica rapa HOM05D000349 ORTHO05D001782 4.9e-08 60.8 31 87.1
Atru.chr8.2478 Acer truncatum HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
Aa31LG11G14480 Aethionema arabicum HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
Aa31LG5G12310 Aethionema arabicum HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
AL3G10930 Arabidopsis lyrata HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
AL6G25890 Arabidopsis lyrata HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
AT5G15070 Arabidopsis thaliana HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
BcaB01g05086 Brassica carinata HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
BcaB08g36931 Brassica carinata HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
A03p06920 Brassica napus HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
C03p07910 Brassica napus HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
BolC3t13288H Brassica oleracea HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
BraA03t10013Z Brassica rapa HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
Carub.0003s0084 Capsella rubella HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
Carub.0006s1324 Capsella rubella HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
CAN.G206.106 Capsicum annuum HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
CARHR198250 Cardamine hirsuta HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
Thhalv10012536m.g Eutrema salsugineum HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
Thhalv10019952m.g Eutrema salsugineum HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
RcHm_v2.0_Chr2g0169241 Rosa chinensis HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
Sp3g00780 Schrenkiella parvula HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
Sp6g29000 Schrenkiella parvula HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
THA.LOC104822374 Tarenaya hassleriana HOM05D000349 ORTHO05D001782 1.2e-06 56.2 37 70.3
SGA_v2.0_scaffold205G41756 Striga asiatica HOM05D000349 ORTHO05D001782 2.0e-06 55.5 37 70.3
AT3G01310 Arabidopsis thaliana HOM05D000349 ORTHO05D001782 2.7e-06 55.1 37 67.6
BcaC04g18992 Brassica carinata HOM05D000349 ORTHO05D001782 2.7e-06 55.1 37 67.6
A10p23790 Brassica napus HOM05D000349 ORTHO05D001782 2.7e-06 55.1 37 67.6
BNapus_Darmor_BZH_scaffold_133p00160 Brassica napus HOM05D000349 ORTHO05D001782 2.7e-06 55.1 35 74.3
C09p62100 Brassica napus HOM05D000349 ORTHO05D001782 2.7e-06 55.1 37 67.6
BolC9t59048H Brassica oleracea HOM05D000349 ORTHO05D001782 2.7e-06 55.1 37 67.6
BraA10t44442Z Brassica rapa HOM05D000349 ORTHO05D001782 2.7e-06 55.1 37 67.6
Eucgr.I01909 Eucalyptus grandis HOM05D000349 ORTHO05D001782 2.7e-06 55.1 37 67.6
THA.LOC104821051 Tarenaya hassleriana HOM05D000349 ORTHO05D001782 3.5e-06 54.7 37 67.6
arahy.Tifrunner.gnm1.ann1.EK04TZ Arachis hypogaea HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
arahy.Tifrunner.gnm1.ann1.F3F8HA Arachis hypogaea HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
EL10Ac2g02930 Beta vulgaris HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
BcaB04g21424 Brassica carinata HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
BcaC09g47646 Brassica carinata HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
BNapus_Darmor_BZH_scaffold_119p00140 Brassica napus HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
BNapus_Darmor_BZH_scaffold_97p00290 Brassica napus HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
BolC1t05950H Brassica oleracea HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
BraA01t04654Z Brassica rapa HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
CSS0003275 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
CSS0004801 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
CSS0006610 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
CSS0031648 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
CARHR075720 Cardamine hirsuta HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Cpa.g.sc14.46 Carica papaya HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
CiPaw.03G030700 Carya illinoinensis HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
CDE06G1135 Ceratophyllum demersum HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Ca_04097_v3 Cicer arietinum L. HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Dinv34993 Davidia involucrata HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Migut.H00886 Erythranthe guttata HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Eucgr.J02137 Eucalyptus grandis HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
FvH4_6g49380 Fragaria vesca HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
FAN02G2291 Fragaria x ananassa HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
FAN14G3781 Fragaria x ananassa HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Glyma.18G255000 Glycine max HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Gohir.A05G364500 Gossypium hirsutum HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Gohir.A09G020400 Gossypium hirsutum HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Gohir.D09G020000 Gossypium hirsutum HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Gorai.006G023400 Gossypium raimondii HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Gorai.012G055700 Gossypium raimondii HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Lj1g0013791 Lotus japonicus HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
MD17G1046500 Malus domestica HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Manes.15G175400 Manihot esculenta HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Medtr7g009060 Medicago truncatula HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Nn4g23012 Nelumbo nucifera HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Nitab4.5_0003226g0010 Nicotiana tabacum HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
PSO478G0063 Papaver somniferum HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Peaxi162Scf00129g00546 Petunia axillaris HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Phvul.008G044100 Phaseolus vulgaris HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Psat3g194960 Pisum sativum HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Potri.004G129900 Populus trichocarpa HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Potri.017G076400 Populus trichocarpa HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Prupe.3G272600 Prunus persica HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
PGR142G4016 Punica granatum HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Sabra17G0068200 Salix brachista HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Hund13247 Selenicereus undatus HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Solyc02g087620.3 Solanum lycopersicum HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
Sopen02g032370 Solanum pennellii HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
PGSC0003DMG403001309 Solanum tuberosum HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
TPR.G4268 Trifolium pratense HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
TAR629G2859 Trochodendron aralioides HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
vmacro05747 Vaccinium macrocarpon HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
GSVIVG01032598001 Vitis vinifera HOM05D000349 ORTHO05D001782 4.6e-06 54.3 37 67.6
CiPaw.04G020400 Carya illinoinensis HOM05D000349 ORTHO05D001782 6.0e-06 53.9 37 67.6
Dinv33714 Davidia involucrata HOM05D000349 ORTHO05D001782 6.0e-06 53.9 37 64.9
Duzib147G1141 Durio zibethinus HOM05D000349 ORTHO05D001782 6.0e-06 53.9 37 64.9
PGR142G2597 Punica granatum HOM05D000349 ORTHO05D001782 6.0e-06 53.9 37 67.6
RhsimUnG0054600 Rhododendron simsii HOM05D000349 ORTHO05D001782 6.0e-06 53.9 50 56.0
TAR622G1370 Trochodendron aralioides HOM05D000349 ORTHO05D001782 6.0e-06 53.9 37 64.9
HPP92_012222 Vanilla planifolia HOM05D000349 ORTHO05D001782 6.0e-06 53.9 37 64.9
VMungo1383G3294 Vigna mungo HOM05D000349 ORTHO05D001782 6.0e-06 53.9 37 67.6
BolC3t15938H Brassica oleracea HOM05D007754 ORTHO05D010129 7.8e-06 53.5 69 47.8
AUR62018295 Chenopodium quinoa HOM05D000349 ORTHO05D001782 7.8e-06 53.5 37 64.9
AUR62031653 Chenopodium quinoa HOM05D000349 ORTHO05D001782 7.8e-06 53.5 37 64.9
Sc10g0003860 Simmondsia chinensis HOM05D000349 ORTHO05D001782 7.8e-06 53.5 37 67.6


User provided reference genes

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