Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p25940 Brassica napus HOM05D008117 ORTHO05D010265 2.7e-39 164.9 81 100.0
C01p32870 Brassica napus HOM05D008117 ORTHO05D010265 8.6e-38 159.8 81 97.5
BolC1t03228H Brassica oleracea HOM05D008117 ORTHO05D010265 1.9e-37 158.7 81 96.3
Thhalv10009847m.g Eutrema salsugineum HOM05D008117 ORTHO05D010265 8.3e-33 143.3 82 89.0
CARHR035030 Cardamine hirsuta HOM05D008117 ORTHO05D010265 7.8e-31 136.7 82 84.1
Carub.0001s3375 Capsella rubella HOM05D008117 ORTHO05D010265 1.9e-29 132.1 82 81.7
AT1G36380 Arabidopsis thaliana HOM05D008117 ORTHO05D010265 3.3e-29 131.3 81 85.2
A05p19980 Brassica napus HOM05D008117 ORTHO05D010265 3.6e-28 127.9 73 89.0
BraA05t20905Z Brassica rapa HOM05D008117 ORTHO05D010265 3.6e-28 127.9 73 89.0
Aa31LG6G9030 Aethionema arabicum HOM05D008117 ORTHO05D010265 1.3e-22 109.4 79 73.4
FAN08G2903 Fragaria x ananassa HOM05D008117 ORTHO05D010265 8.9e-19 96.7 82 62.2
Oeu002001.1 Olea europaea HOM05D008117 ORTHO05D010265 8.9e-19 96.7 71 63.4
PGR042G1408 Punica granatum HOM05D008117 ORTHO05D010265 8.9e-19 96.7 73 68.5
FAN13G1450 Fragaria x ananassa HOM05D008117 ORTHO05D010265 2.0e-18 95.5 82 63.4
FvH4_5g38460 Fragaria vesca HOM05D008117 ORTHO05D010265 5.8e-18 94.0 71 67.6
Eucgr.F03736 Eucalyptus grandis HOM05D008117 ORTHO05D010265 7.5e-18 93.6 75 66.7
PGSC0003DMG400006546 Solanum tuberosum HOM05D008117 ORTHO05D010265 9.8e-18 93.2 82 62.2
CSS0024149 Camellia sinensis var. sinensis HOM05D008117 ORTHO05D010265 1.3e-17 92.8 69 69.6
Rhsim13G0192300 Rhododendron simsii HOM05D008117 ORTHO05D010265 6.4e-17 90.5 81 60.5
CANSAT35G0099 Cannabis sativa HOM05D008117 ORTHO05D010265 1.1e-16 89.7 67 68.7
DCAR_028229 Daucus carota HOM05D008117 ORTHO05D010265 1.1e-16 89.7 73 64.4
RcHm_v2.0_Chr7g0240501 Rosa chinensis HOM05D008117 ORTHO05D010265 1.1e-16 89.7 81 59.3
QL12p035434 Quercus lobata HOM05D008117 ORTHO05D010265 2.4e-16 88.6 68 66.2
Thecc.08G115700 Theobroma cacao HOM05D008117 ORTHO05D010265 2.4e-16 88.6 71 64.8
CiPaw.05G230200 Carya illinoinensis HOM05D008117 ORTHO05D010265 3.2e-16 88.2 73 64.4
FAN04G0767 Fragaria x ananassa HOM05D008117 ORTHO05D010265 3.2e-16 88.2 89 58.4
Gohir.A05G231100 Gossypium hirsutum HOM05D008117 ORTHO05D010265 3.2e-16 88.2 84 58.3
ClCG08G010860 Citrullus lanatus HOM05D008117 ORTHO05D010265 4.1e-16 87.8 68 69.1
vmacro12526 Vaccinium macrocarpon HOM05D008117 ORTHO05D010265 7.0e-16 87.0 79 60.8
Ciclev10002965m.g Citrus clementina HOM05D008117 ORTHO05D010265 1.2e-15 86.3 70 62.9
Manes.18G072200 Manihot esculenta HOM05D008117 ORTHO05D010265 1.6e-15 85.9 76 64.5
Sabra02G0071000 Salix brachista HOM05D008117 ORTHO05D010265 2.7e-15 85.1 75 66.7
Prupe.1G507400 Prunus persica HOM05D008117 ORTHO05D010265 3.5e-15 84.7 82 57.3
Sopen11g008360 Solanum pennellii HOM05D008117 ORTHO05D010265 3.5e-15 84.7 82 58.5
CsaV3_6G035660 Cucumis sativus L. HOM05D008117 ORTHO05D010265 6.0e-15 84.0 73 65.8
Sed0012248 Sechium edule HOM05D008117 ORTHO05D010265 6.0e-15 84.0 73 61.6
Gohir.D05G233600 Gossypium hirsutum HOM05D008117 ORTHO05D010265 1.3e-14 82.8 60 68.3
Gorai.009G241700 Gossypium raimondii HOM05D008117 ORTHO05D010265 1.3e-14 82.8 60 68.3
arahy.Tifrunner.gnm1.ann1.V815ZK Arachis hypogaea HOM05D008117 ORTHO05D010265 3.0e-14 81.6 73 61.6
CAN.G61.2 Capsicum annuum HOM05D008117 ORTHO05D010265 3.0e-14 81.6 77 55.8
HPP92_011399 Vanilla planifolia HOM05D008117 ORTHO05D010265 3.0e-14 81.6 70 58.6
arahy.Tifrunner.gnm1.ann1.J5UY3S Arachis hypogaea HOM05D008117 ORTHO05D010265 3.9e-14 81.3 73 60.3
Duzib041G0298 Durio zibethinus HOM05D008117 ORTHO05D010265 3.9e-14 81.3 70 62.9
Hund16816 Selenicereus undatus HOM05D008117 ORTHO05D010265 5.0e-14 80.9 71 63.4
SGA_v2.0_scaffold25G11087 Striga asiatica HOM05D008117 ORTHO05D010265 5.0e-14 80.9 73 53.4
Lj1g0006954 Lotus japonicus HOM05D008117 ORTHO05D010265 1.1e-13 79.7 73 58.9
MD15G1359700 Malus domestica HOM05D008117 ORTHO05D010265 1.5e-13 79.3 81 55.6
MSTRG.24141 Avicennia marina HOM05D008117 ORTHO05D010265 2.5e-13 78.6 71 56.3
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 2.5e-13 78.6 71 53.5
Nn5g27934 Nelumbo nucifera HOM05D008117 ORTHO05D010265 3.3e-13 78.2 72 55.6
Sc23g0000960 Simmondsia chinensis HOM05D008117 ORTHO05D010265 7.3e-13 77.0 82 54.9
EL10Ac5g11972 Beta vulgaris HOM05D008117 ORTHO05D010265 9.5e-13 76.6 75 60.0
AUR62002978 Chenopodium quinoa HOM05D008117 ORTHO05D010265 9.5e-13 76.6 73 57.5
MELO3C030294.2 Cucumis melo HOM05D008117 ORTHO05D010265 9.5e-13 76.6 67 65.7
Os02g0552400 Oryza sativa ssp. japonica HOM05D008117 ORTHO05D010265 9.5e-13 76.6 62 61.3
Psat5g111920 Pisum sativum HOM05D008117 ORTHO05D010265 9.5e-13 76.6 73 56.2
Medtr5g062750 Medicago truncatula HOM05D008117 ORTHO05D010265 1.2e-12 76.3 78 55.1
Zm00001eb227210 Zea mays HOM05D008117 ORTHO05D010265 2.1e-12 75.5 63 60.3
Zm00001eb243570 Zea mays HOM05D008117 ORTHO05D010265 2.1e-12 75.5 63 60.3
Glyma.13G084800 Glycine max HOM05D008117 ORTHO05D010265 4.7e-12 74.3 71 53.5
Glyma.14G166600 Glycine max HOM05D008117 ORTHO05D010265 6.2e-12 73.9 69 55.1
Phvul.008G168800 Phaseolus vulgaris HOM05D008117 ORTHO05D010265 6.2e-12 73.9 71 57.7
Potri.005G171000 Populus trichocarpa HOM05D008117 ORTHO05D010265 8.1e-12 73.6 71 62.0
Lalb_Chr04g0253261 Lupinus albus HOM05D008117 ORTHO05D010265 1.4e-11 72.8 76 55.3
Potri.002G090100 Populus trichocarpa HOM05D008117 ORTHO05D010265 1.4e-11 72.8 74 60.8
SalBow6G0993 Salvia bowleyana HOM05D008117 ORTHO05D010265 2.3e-11 72.0 44 75.0
CDE08G1486 Ceratophyllum demersum HOM05D008117 ORTHO05D010265 9.9e-10 66.6 55 69.1
EL10Ac1g00048 Beta vulgaris HOM05D008117 ORTHO05D010265 2.2e-09 65.5 71 54.9
AagrBONN_evm.TU.Sc2ySwM_117.1449 Anthoceros agrestis HOM05D008117 ORTHO05D010265 9.2e-08 60.1 61 49.2
CDE06G1754 Ceratophyllum demersum HOM05D000001 ORTHO05D011242 2.1e-07 58.9 45 68.9
VMungo0647G2241 Vigna mungo HOM05D008117 ORTHO05D010265 3.5e-07 58.2 42 64.3


User provided reference genes

Program Settings