Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p25750 Brassica napus HOM05D001961 ORTHO05D020074 1.4e-54 216.1 111 100.0
BcaB02g10685 Brassica carinata HOM05D001961 ORTHO05D002286 6.7e-25 117.5 128 59.4
AT3G47910 Arabidopsis thaliana HOM05D001961 ORTHO05D002286 1.1e-24 116.7 128 56.2
Thhalv10010060m.g Eutrema salsugineum HOM05D001961 ORTHO05D002286 1.5e-24 116.3 128 57.0
Thhalv10010059m.g Eutrema salsugineum HOM05D001961 ORTHO05D002286 1.9e-24 115.9 128 57.8
Sp5g14050 Schrenkiella parvula HOM05D001961 ORTHO05D002286 2.5e-24 115.5 128 57.8
AT3G47890 Arabidopsis thaliana HOM05D001961 ORTHO05D002286 3.3e-24 115.2 128 55.5
A06p19750 Brassica napus HOM05D001961 ORTHO05D002286 1.6e-23 112.8 130 55.4
BraA06t25054Z Brassica rapa HOM05D001961 ORTHO05D002286 1.6e-23 112.8 130 55.4
BcaC01g01766 Brassica carinata HOM05D001961 ORTHO05D002286 2.1e-23 112.5 130 55.4
BcaC01g01759 Brassica carinata HOM05D001961 ORTHO05D002286 3.7e-23 111.7 130 55.4
C03p72190 Brassica napus HOM05D001961 ORTHO05D002286 3.7e-23 111.7 130 55.4
BolC3t19515H Brassica oleracea HOM05D001961 ORTHO05D002286 3.7e-23 111.7 130 55.4
Carub.0005s1403 Capsella rubella HOM05D001961 ORTHO05D002286 4.8e-23 111.3 128 54.7
Sp5g14040 Schrenkiella parvula HOM05D001961 ORTHO05D002286 2.4e-22 109.0 128 57.0
Carub.0005s1404 Capsella rubella HOM05D001961 ORTHO05D002286 4.0e-22 108.2 128 53.9
AL5G27220 Arabidopsis lyrata HOM05D001961 ORTHO05D002286 6.9e-22 107.5 128 53.9
BcaB05g23091 Brassica carinata HOM05D001961 ORTHO05D002286 9.0e-22 107.1 116 60.3
A06p19710 Brassica napus HOM05D001961 ORTHO05D002286 9.0e-22 107.1 133 52.6
BraA06t25050Z Brassica rapa HOM05D001961 ORTHO05D002286 9.0e-22 107.1 133 52.6
AL5G27230 Arabidopsis lyrata HOM05D001961 ORTHO05D002286 1.6e-18 96.3 128 50.0
BraA01t02491Z Brassica rapa HOM05D001961 ORTHO05D020074 6.0e-18 94.4 49 100.0
CARHR156630 Cardamine hirsuta HOM05D001961 ORTHO05D002286 1.0e-17 93.6 110 56.4
CARHR156620 Cardamine hirsuta HOM05D001961 ORTHO05D002286 1.5e-16 89.7 111 53.2
Aa31LG11G1000 Aethionema arabicum HOM05D001961 ORTHO05D002286 1.3e-15 86.7 132 44.7
Aa31LG4G16560 Aethionema arabicum HOM05D001961 ORTHO05D002286 1.3e-15 86.7 123 49.6
BolC1t03189H Brassica oleracea HOM05D001961 ORTHO05D020074 1.3e-15 86.7 49 91.8
C01p32530 Brassica napus HOM05D001961 ORTHO05D020074 2.8e-15 85.5 49 89.8
THA.LOC104821450 Tarenaya hassleriana HOM05D001961 ORTHO05D002286 6.3e-15 84.3 128 48.4
Haze_07394 Corylus avellana HOM05D001961 ORTHO05D002286 2.6e-13 79.0 129 45.7
Cfa019014 Carpinus fangiana HOM05D001961 ORTHO05D002286 1.3e-12 76.6 129 45.7
COL.COLO4_35465 Corchorus olitorius HOM05D001961 ORTHO05D002286 2.9e-12 75.5 129 43.4
Actinidia34975 Actinidia chinensis HOM05D001961 ORTHO05D002286 1.1e-11 73.6 105 44.8
Ciclev10018472m.g Citrus clementina HOM05D001961 ORTHO05D002286 1.4e-11 73.2 121 42.1
Gohir.D03G090700 Gossypium hirsutum HOM05D001961 ORTHO05D002286 1.4e-11 73.2 112 42.0
Gorai.003G070500 Gossypium raimondii HOM05D001961 ORTHO05D002286 1.4e-11 73.2 112 42.0
Duzib205G1945 Durio zibethinus HOM05D001961 ORTHO05D002286 1.9e-11 72.8 120 40.8
Gohir.A03G064400 Gossypium hirsutum HOM05D001961 ORTHO05D002286 1.9e-11 72.8 112 42.0
Gohir.A11G028810 Gossypium hirsutum HOM05D001961 ORTHO05D002286 2.5e-11 72.4 126 39.7
Ca_21858_v3 Cicer arietinum L. HOM05D001961 ORTHO05D002286 5.5e-11 71.2 92 51.1
Dinv38651 Davidia involucrata HOM05D001961 ORTHO05D002286 5.5e-11 71.2 128 38.3
Duzib068G1318 Durio zibethinus HOM05D001961 ORTHO05D002286 5.5e-11 71.2 134 39.6
FAN13G0464 Fragaria x ananassa HOM05D001961 ORTHO05D002286 5.5e-11 71.2 121 39.7
Gohir.D11G032100 Gossypium hirsutum HOM05D001961 ORTHO05D002286 5.5e-11 71.2 126 39.7
Gorai.007G034900 Gossypium raimondii HOM05D001961 ORTHO05D002286 7.2e-11 70.9 126 39.7
MD06G1185800 Malus domestica HOM05D001961 ORTHO05D002286 9.4e-11 70.5 115 40.9
Thecc.03G077100 Theobroma cacao HOM05D001961 ORTHO05D002286 9.4e-11 70.5 117 43.6
FAN08G2604 Fragaria x ananassa HOM05D001961 ORTHO05D002286 1.2e-10 70.1 121 38.8
FAN18G4418 Fragaria x ananassa HOM05D001961 ORTHO05D002286 1.6e-10 69.7 121 38.8
CiPaw.11G036500 Carya illinoinensis HOM05D001961 ORTHO05D002286 2.1e-10 69.3 129 44.2
Lalb_Chr13g0298141 Lupinus albus HOM05D001961 ORTHO05D002286 2.1e-10 69.3 94 46.8
Nitab4.5_0007282g0070 Nicotiana tabacum HOM05D001961 ORTHO05D002286 2.1e-10 69.3 118 43.2
CSS0045618 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 2.7e-10 68.9 125 39.2
Prupe.5G184600 Prunus persica HOM05D001961 ORTHO05D002286 2.7e-10 68.9 129 38.8
vmacro19421 Vaccinium macrocarpon HOM05D001961 ORTHO05D002286 2.7e-10 68.9 125 37.6
TWI81G0197 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 3.6e-10 68.6 105 43.8
arahy.Tifrunner.gnm1.ann1.DV6TYS Arachis hypogaea HOM05D001961 ORTHO05D002286 4.6e-10 68.2 94 43.6
arahy.Tifrunner.gnm1.ann1.LMB17M Arachis hypogaea HOM05D001961 ORTHO05D002286 4.6e-10 68.2 94 43.6
FAN04G1134 Fragaria x ananassa HOM05D001961 ORTHO05D002286 4.6e-10 68.2 121 38.0
TWI60G1556 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 4.6e-10 68.2 105 42.9
CSS0014551 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 6.1e-10 67.8 125 38.4
Peaxi162Scf00009g00524 Petunia axillaris HOM05D001961 ORTHO05D002286 6.1e-10 67.8 129 38.0
GSVIVG01008079001 Vitis vinifera HOM05D001961 ORTHO05D002286 6.1e-10 67.8 108 43.5
FvH4_5g15740 Fragaria vesca HOM05D001961 ORTHO05D002286 7.9e-10 67.4 121 38.0
Nitab4.5_0000909g0070 Nicotiana tabacum HOM05D001961 ORTHO05D002286 7.9e-10 67.4 122 42.6
Peaxi162Scf00689g00564 Petunia axillaris HOM05D001961 ORTHO05D002286 7.9e-10 67.4 104 45.2
Glyma.05G031000 Glycine max HOM05D001961 ORTHO05D002286 1.0e-09 67.0 109 43.1
Nitab4.5_0004478g0040 Nicotiana tabacum HOM05D001961 ORTHO05D002286 1.0e-09 67.0 118 42.4
Glyma.17G095800 Glycine max HOM05D001961 ORTHO05D002286 1.8e-09 66.2 109 42.2
Lj5C117T8 Lonicera japonica HOM05D001961 ORTHO05D002286 1.8e-09 66.2 104 43.3
Nitab4.5_0000003g0050 Nicotiana tabacum HOM05D001961 ORTHO05D002286 1.8e-09 66.2 120 42.5
Cc04_g15870 Coffea canephora HOM05D001961 ORTHO05D002286 2.3e-09 65.9 105 42.9
Lj1g0021908 Lotus japonicus HOM05D001961 ORTHO05D002286 2.3e-09 65.9 109 42.2
Sopen06g027420 Solanum pennellii HOM05D001961 ORTHO05D002286 2.3e-09 65.9 104 43.3
TWI15G0443 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 2.3e-09 65.9 129 36.4
MSTRG.11404 Avicennia marina HOM05D001961 ORTHO05D002286 3.0e-09 65.5 118 39.0
Phvul.003G194200 Phaseolus vulgaris HOM05D001961 ORTHO05D002286 3.0e-09 65.5 129 40.3
Sabra15G0091600 Salix brachista HOM05D001961 ORTHO05D002286 3.0e-09 65.5 112 40.2
CsaV3_1G002070 Cucumis sativus L. HOM05D001961 ORTHO05D002286 3.9e-09 65.1 118 38.1
Lalb_Chr12g0201211 Lupinus albus HOM05D001961 ORTHO05D002286 3.9e-09 65.1 94 45.7
Rhsim08G0161300 Rhododendron simsii HOM05D001961 ORTHO05D002286 3.9e-09 65.1 126 37.3
TPR.G38388 Trifolium pratense HOM05D001961 ORTHO05D002286 3.9e-09 65.1 92 44.6
VMungo1215G0372 Vigna mungo HOM05D001961 ORTHO05D002286 3.9e-09 65.1 129 38.8
PGSC0003DMG400033067 Solanum tuberosum HOM05D001961 ORTHO05D002286 5.1e-09 64.7 104 43.3
HanXRQChr08g0236941 Helianthus annuus HOM05D001961 ORTHO05D002286 6.7e-09 64.3 104 36.5
MD14G1192000 Malus domestica HOM05D001961 ORTHO05D002286 6.7e-09 64.3 110 39.1
Atru.chr9.2337 Acer truncatum HOM05D001961 ORTHO05D002286 8.8e-09 63.9 130 38.5
RcHm_v2.0_Chr7g0180371 Rosa chinensis HOM05D001961 ORTHO05D002286 8.8e-09 63.9 116 37.1
Sabra12G0051100 Salix brachista HOM05D001961 ORTHO05D002286 1.1e-08 63.5 113 38.9
Sc04g0002330 Simmondsia chinensis HOM05D001961 ORTHO05D002286 1.1e-08 63.5 125 36.0
MELO3C017148.2 Cucumis melo HOM05D001961 ORTHO05D002286 1.5e-08 63.2 131 38.9
Dinv19903 Davidia involucrata HOM05D001961 ORTHO05D002286 1.5e-08 63.2 131 37.4
HanXRQChr05g0155261 Helianthus annuus HOM05D001961 ORTHO05D002286 1.5e-08 63.2 101 40.6
Lj9C457G12 Lonicera japonica HOM05D001961 ORTHO05D002286 1.5e-08 63.2 107 40.2
Solyc06g071120.3 Solanum lycopersicum HOM05D001961 ORTHO05D002286 1.5e-08 63.2 104 41.3
Migut.I00114 Erythranthe guttata HOM05D001961 ORTHO05D002286 2.5e-08 62.4 126 38.1
QL10p014886 Quercus lobata HOM05D001961 ORTHO05D002286 2.5e-08 62.4 129 41.1
CAN.G628.49 Capsicum annuum HOM05D001961 ORTHO05D002286 3.3e-08 62.0 124 40.3
ClCG06G016460 Citrullus lanatus HOM05D001961 ORTHO05D002286 3.3e-08 62.0 109 39.4
Lj4g0028007 Lotus japonicus HOM05D001961 ORTHO05D002286 3.3e-08 62.0 94 42.6
Oeu020375.1 Olea europaea HOM05D001961 ORTHO05D002286 3.3e-08 62.0 104 39.4
Nn4g23006 Nelumbo nucifera HOM05D001961 ORTHO05D002286 4.3e-08 61.6 113 40.7
Psat4g054160 Pisum sativum HOM05D001961 ORTHO05D002286 4.3e-08 61.6 93 41.9
Potri.012G071900 Populus trichocarpa HOM05D001961 ORTHO05D002286 4.3e-08 61.6 113 38.9
DCAR_021541 Daucus carota HOM05D001961 ORTHO05D002286 5.7e-08 61.2 116 38.8
Potri.015G066500 Populus trichocarpa HOM05D001961 ORTHO05D002286 5.7e-08 61.2 123 37.4
DCAR_026083 Daucus carota HOM05D001961 ORTHO05D002286 7.4e-08 60.8 130 34.6
Actinidia37665 Actinidia chinensis HOM05D001961 ORTHO05D002286 9.7e-08 60.5 126 34.9
SalBow7G0691 Salvia bowleyana HOM05D001961 ORTHO05D002286 9.7e-08 60.5 105 41.0
CAN.G999.31 Capsicum annuum HOM05D001961 ORTHO05D002286 1.3e-07 60.1 104 41.3
AUR62008343 Chenopodium quinoa HOM05D001961 ORTHO05D002286 1.3e-07 60.1 111 36.9
Medtr4g107470 Medicago truncatula HOM05D001961 ORTHO05D002286 1.3e-07 60.1 63 57.1
QL10p014874 Quercus lobata HOM05D001961 ORTHO05D002286 1.3e-07 60.1 127 40.2
Cpa.g.sc17.186 Carica papaya HOM05D001961 ORTHO05D002286 2.2e-07 59.3 63 54.0
SalBow5G1786 Salvia bowleyana HOM05D001961 ORTHO05D002286 2.2e-07 59.3 116 36.2
TAR374G1240 Trochodendron aralioides HOM05D001961 ORTHO05D002286 2.2e-07 59.3 129 35.7
Lsat_1_v5_gn_1_11560 Lactuca sativa HOM05D001961 ORTHO05D002286 2.8e-07 58.9 99 40.4
Sed0025522 Sechium edule HOM05D001961 ORTHO05D002286 2.8e-07 58.9 63 52.4
SGA_v2.0_scaffold114G31883 Striga asiatica HOM05D001961 ORTHO05D002286 3.7e-07 58.5 105 40.0
SGA_v2.0_scaffold7G04090 Striga asiatica HOM05D001961 ORTHO05D002286 3.7e-07 58.5 127 37.0
AUR62021754 Chenopodium quinoa HOM05D001961 ORTHO05D002286 6.3e-07 57.8 111 36.0
Hund02679 Selenicereus undatus HOM05D001961 ORTHO05D002286 1.4e-06 56.6 118 33.1
Migut.I00115 Erythranthe guttata HOM05D001961 ORTHO05D002286 2.4e-06 55.8 58 53.4
Nn3g17102 Nelumbo nucifera HOM05D001961 ORTHO05D002286 2.4e-06 55.8 128 35.9
PSO591G0439 Papaver somniferum HOM05D001961 ORTHO05D002286 3.1e-06 55.5 127 34.6
EL10Ac5g10921 Beta vulgaris HOM05D001961 ORTHO05D002286 4.1e-06 55.1 101 35.6
Oeu039544.2 Olea europaea HOM05D001961 ORTHO05D002286 4.1e-06 55.1 102 40.2
PSO832G1192 Papaver somniferum HOM05D001961 ORTHO05D002286 4.1e-06 55.1 127 34.6
Lsat_1_v5_gn_5_18460 Lactuca sativa HOM05D001961 ORTHO05D002286 5.3e-06 54.7 101 38.6
Eucgr.B00398 Eucalyptus grandis HOM05D001961 ORTHO05D002286 9.1e-06 53.9 109 35.8
Sopen03g032420 Solanum pennellii HOM05D001961 ORTHO05D002286 9.1e-06 53.9 105 34.3


User provided reference genes

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