Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 7.0e-142 507.3 258 100.0
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 1.0e-140 503.4 258 98.8
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 1.2e-138 496.5 258 97.7
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 1.0e-137 493.4 258 97.3
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 2.9e-132 475.3 258 93.4
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 1.7e-111 406.4 258 81.8
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 2.4e-110 402.5 259 79.9
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 9.2e-110 400.6 258 81.0
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 2.7e-109 399.1 258 80.2
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 1.7e-108 396.4 208 96.6
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 2.3e-108 396.0 259 79.9
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 2.9e-108 395.6 258 77.9
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 1.9e-107 392.9 258 78.3
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 6.2e-98 361.3 208 90.9
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 4.3e-91 338.6 258 72.5
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 1.9e-86 323.2 208 78.4
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 6.2e-82 308.1 260 65.0
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 8.1e-82 307.8 260 65.4
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 4.0e-81 305.4 260 63.5
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 8.9e-81 304.3 260 65.8
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 9.9e-80 300.8 265 62.6
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 9.9e-80 300.8 262 62.6
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 1.7e-79 300.1 265 64.2
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 1.4e-78 297.0 262 63.4
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 2.4e-78 296.2 262 62.2
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 9.3e-78 294.3 262 63.7
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 1.2e-77 293.9 262 63.0
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 1.2e-77 293.9 262 63.0
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 4.6e-77 292.0 262 63.0
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 6.0e-77 291.6 262 61.5
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 6.0e-77 291.6 262 61.5
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 2.5e-75 286.2 249 63.5
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 1.2e-72 277.3 260 58.5
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 2.6e-72 276.2 250 61.6
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 1.3e-71 273.9 250 60.8
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 1.7e-71 273.5 195 69.2
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 8.4e-71 271.2 222 62.6
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 1.6e-69 266.9 196 68.4
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 2.7e-69 266.2 253 60.9
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 3.5e-69 265.8 193 67.4
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 3.5e-69 265.8 193 67.4
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 6.0e-69 265.0 178 70.8
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 6.0e-69 265.0 193 67.4
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 6.0e-69 265.0 178 71.3
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 7.9e-69 264.6 240 55.8
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 7.9e-69 264.6 201 64.2
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 7.9e-69 264.6 193 67.4
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 1.0e-68 264.2 179 70.9
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 1.0e-68 264.2 246 55.7
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 2.3e-68 263.1 199 66.3
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 3.0e-68 262.7 201 65.2
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 3.0e-68 262.7 178 69.7
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 3.9e-68 262.3 168 71.4
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 6.6e-68 261.5 178 69.7
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 1.1e-67 260.8 258 52.7
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 1.5e-67 260.4 238 58.4
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 4.3e-67 258.8 203 63.1
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 4.3e-67 258.8 209 62.2
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 5.6e-67 258.5 178 69.1
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 9.6e-67 257.7 196 65.8
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 1.3e-66 257.3 170 71.8
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 2.8e-66 256.1 178 67.4
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 4.8e-66 255.4 203 63.5
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 6.2e-66 255.0 178 67.4
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 6.2e-66 255.0 191 65.4
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 8.1e-66 254.6 209 70.3
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 8.1e-66 254.6 266 52.3
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 1.1e-65 254.2 210 64.3
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 1.4e-65 253.8 197 64.5
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 1.4e-65 253.8 188 67.0
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 1.4e-65 253.8 170 70.6
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 1.8e-65 253.4 186 64.0
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 2.4e-65 253.1 178 66.3
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 3.1e-65 252.7 192 63.5
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 9.0e-65 251.1 199 64.3
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 1.2e-64 250.8 193 65.3
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 1.5e-64 250.4 199 63.8
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 1.5e-64 250.4 212 61.3
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 3.4e-64 249.2 260 51.5
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 5.8e-64 248.4 233 55.8
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 7.6e-64 248.1 265 53.6
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 7.6e-64 248.1 170 69.4
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 2.2e-63 246.5 206 61.2
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 4.9e-63 245.4 194 61.3
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 4.9e-63 245.4 193 64.8
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 6.4e-63 245.0 204 62.3
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.1e-62 244.2 266 50.4
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 1.1e-62 244.2 164 72.6
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 1.4e-62 243.8 184 64.7
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 9.3e-62 241.1 166 68.7
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 9.3e-62 241.1 156 73.7
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 1.2e-61 240.7 193 63.2
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 1.6e-61 240.4 184 62.5
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 2.1e-61 240.0 166 71.7
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 2.7e-61 239.6 225 63.1
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 4.6e-61 238.8 177 62.7
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 1.0e-60 237.7 178 62.4
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 1.1e-59 234.2 212 55.2
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 2.5e-59 233.0 178 61.8
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 7.4e-59 231.5 170 64.7
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 2.8e-58 229.6 177 60.5
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 3.7e-58 229.2 192 59.4
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 4.8e-58 228.8 188 60.6
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 8.1e-58 228.0 197 59.9
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 1.8e-57 226.9 192 55.2
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 2.4e-57 226.5 177 60.5
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 4.0e-57 225.7 199 60.3
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 2.2e-55 219.9 154 68.8
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 9.3e-54 214.5 218 52.3
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 1.2e-53 214.2 160 67.5
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 7.9e-53 211.5 144 70.1
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 7.9e-53 211.5 206 51.9
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 3.3e-51 206.1 147 68.7
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 5.7e-51 205.3 227 50.7
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 3.8e-47 192.6 130 70.8
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 1.8e-44 183.7 129 69.8
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 2.3e-44 183.3 128 64.8
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 4.8e-42 175.6 139 58.3
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 1.1e-41 174.5 128 64.1
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 1.5e-40 170.6 155 50.3
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 8.5e-39 164.9 197 44.2
BcaC01g01754 Brassica carinata HOM05D005796 ORTHO05D007054 8.8e-36 154.8 114 71.1
C03p72260 Brassica napus HOM05D005796 ORTHO05D007054 8.8e-36 154.8 114 71.1
BolC3t19521H Brassica oleracea HOM05D005796 ORTHO05D007054 8.8e-36 154.8 114 71.1
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 5.3e-33 145.6 95 74.7
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 9.1e-33 144.8 161 53.4
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 1.2e-32 144.4 166 50.0
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 2.2e-26 123.6 82 70.7
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 1.5e-22 110.9 79 62.0
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 7.2e-22 108.6 78 64.1
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 1.3e-18 97.8 182 38.5
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 2.9e-15 86.7 102 46.1
MCO14G168 Micromonas commoda HOM05D005796 ORTHO05D007054 2.1e-13 80.5 152 29.6
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 5.2e-12 75.9 50 66.0
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 6.3e-10 68.9 91 41.8
Cre06.g295826 Chlamydomonas reinhardtii HOM05D005796 ORTHO05D007054 1.2e-08 64.7 130 29.2
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 7.2e-06 55.5 34 70.6


User provided reference genes

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