Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 2.5e-84 315.5 165 100.0
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 2.5e-84 315.5 165 100.0
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 5.7e-81 304.3 165 96.4
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 2.8e-80 302.0 165 97.0
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 2.9e-69 265.4 165 88.5
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 2.9e-69 265.4 165 88.5
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 1.0e-66 256.9 165 86.1
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 1.0e-66 256.9 165 86.1
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 1.0e-66 256.9 165 86.1
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 5.4e-63 244.6 165 84.2
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 1.1e-60 236.9 168 82.7
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 1.5e-60 236.5 153 85.0
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 2.8e-59 232.3 175 78.9
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 6.2e-59 231.1 169 81.1
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 2.3e-58 229.2 165 76.4
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 6.0e-54 214.5 121 94.2
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 6.8e-50 201.1 165 69.1
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 3.6e-43 178.7 117 85.5
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 6.0e-38 161.4 109 83.5
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 2.8e-35 152.5 178 53.9
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 9.9e-33 144.1 162 55.6
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 2.4e-31 139.4 167 52.7
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.2e-31 139.0 167 52.7
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 7.1e-31 137.9 115 64.3
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 7.1e-31 137.9 177 52.0
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 6.0e-30 134.8 167 50.3
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 6.0e-30 134.8 167 50.9
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 7.8e-30 134.4 166 50.6
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 7.8e-30 134.4 166 50.6
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 1.1e-28 130.6 158 50.0
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 3.3e-28 129.0 181 50.3
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 9.6e-28 127.5 192 47.9
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 6.2e-27 124.8 126 61.1
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 6.2e-27 124.8 168 48.2
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 1.1e-26 124.0 116 62.1
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 1.4e-26 123.6 169 48.5
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 2.4e-26 122.9 168 50.0
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.1e-26 122.5 167 49.1
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 9.0e-26 120.9 161 49.1
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 1.5e-25 120.2 114 63.2
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 2.0e-25 119.8 162 49.4
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 2.6e-25 119.4 170 48.2
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 3.4e-25 119.0 160 47.5
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.8e-25 118.2 138 50.7
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 9.9e-25 117.5 159 50.9
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 4.9e-24 115.2 177 45.2
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 6.4e-24 114.8 166 48.2
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 6.4e-24 114.8 185 45.9
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 1.1e-23 114.0 160 50.6
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 1.1e-23 114.0 177 44.6
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 1.9e-23 113.2 160 45.6
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 9.3e-23 110.9 174 45.4
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 2.1e-22 109.8 158 46.8
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 2.7e-22 109.4 182 46.7
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 2.7e-22 109.4 155 47.7
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 3.5e-22 109.0 178 47.8
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 1.8e-21 106.7 154 46.1
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 3.9e-21 105.5 187 43.9
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 3.9e-21 105.5 178 42.7
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 5.1e-21 105.1 169 43.2
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 8.7e-21 104.4 164 47.6
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 8.7e-21 104.4 116 55.2
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 1.9e-20 103.2 172 44.2
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 1.9e-20 103.2 158 50.0
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 2.5e-20 102.8 167 44.3
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 2.8e-19 99.4 173 42.2
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 3.6e-19 99.0 178 43.3
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 4.8e-19 98.6 159 44.0
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 6.2e-19 98.2 174 42.0
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 6.2e-19 98.2 175 43.4
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 6.2e-19 98.2 161 45.3
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.8e-18 96.7 170 44.1
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.8e-18 96.7 170 44.1
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 1.8e-18 96.7 154 44.8
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 2.4e-18 96.3 158 43.0
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 3.1e-18 95.9 169 43.8
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 4.0e-18 95.5 170 44.1
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 5.3e-18 95.1 178 42.1
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 6.9e-18 94.7 158 43.0
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 1.5e-17 93.6 160 43.8
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 2.0e-17 93.2 178 41.0
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 2.6e-17 92.8 163 45.4
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 4.5e-17 92.0 162 43.8
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 4.5e-17 92.0 178 43.8
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 7.6e-17 91.3 173 43.4
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 9.9e-17 90.9 116 54.3
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 9.9e-17 90.9 172 41.9
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 9.9e-17 90.9 175 41.7
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 9.9e-17 90.9 199 37.7
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 1.7e-16 90.1 174 40.8
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 2.2e-16 89.7 170 41.8
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 2.9e-16 89.4 174 39.1
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 3.8e-16 89.0 178 39.3
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 3.8e-16 89.0 170 41.2
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 8.4e-16 87.8 158 42.4
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 8.4e-16 87.8 203 37.4
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 8.4e-16 87.8 166 39.2
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 1.1e-15 87.4 173 39.9
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 1.1e-15 87.4 159 42.1
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 1.1e-15 87.4 171 39.8
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 1.1e-15 87.4 187 40.1
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.4e-15 87.0 119 48.7
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 1.9e-15 86.7 173 39.9
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 3.2e-15 85.9 129 49.6
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 4.2e-15 85.5 188 38.8
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 5.5e-15 85.1 167 39.5
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 5.5e-15 85.1 174 39.7
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 5.5e-15 85.1 174 39.7
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 7.1e-15 84.7 176 36.9
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 9.3e-15 84.3 170 38.8
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 9.3e-15 84.3 171 39.8
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 9.3e-15 84.3 174 39.7
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 9.3e-15 84.3 176 38.1
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 9.3e-15 84.3 175 39.4
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 9.3e-15 84.3 157 42.0
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 1.2e-14 84.0 166 36.7
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 1.6e-14 83.6 175 37.1
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 2.1e-14 83.2 160 42.5
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 2.7e-14 82.8 163 37.4
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 3.5e-14 82.4 87 55.2
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 4.6e-14 82.0 175 37.7
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 6.0e-14 81.6 176 36.4
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 5.1e-13 78.6 110 51.8
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 5.1e-13 78.6 172 37.8
Oeu007933.1 Olea europaea HOM05D000179 ORTHO05D000107 1.1e-12 77.4 123 40.7
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 1.1e-12 77.4 160 36.9
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 1.5e-12 77.0 124 42.7
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 2.5e-12 76.3 175 38.9
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 1.3e-11 73.9 174 36.8
EL10Ac8g19493 Beta vulgaris HOM05D000179 ORTHO05D000107 2.8e-11 72.8 81 46.9
DCAR_030310 Daucus carota HOM05D000179 ORTHO05D000107 2.8e-11 72.8 151 35.1
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 3.7e-11 72.4 160 36.9
MSTRG.9361 Avicennia marina HOM05D000179 ORTHO05D000107 1.4e-10 70.5 82 45.1
HPP92_019339 Vanilla planifolia HOM05D000179 ORTHO05D000107 1.4e-10 70.5 153 35.9
Peaxi162Scf00033g02311 Petunia axillaris HOM05D000179 ORTHO05D000107 4.0e-10 68.9 76 44.7
Oeu047494.1 Olea europaea HOM05D005335 ORTHO05D006472 6.9e-10 68.2 73 46.6
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 6.9e-10 68.2 163 33.1
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 9.0e-10 67.8 190 35.8
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 9.0e-10 67.8 175 36.6
CAN.G65.84 Capsicum annuum HOM05D000179 ORTHO05D000107 4.5e-09 65.5 113 37.2
Lsat_1_v5_gn_1_28901 Lactuca sativa HOM05D005335 ORTHO05D006472 5.8e-09 65.1 124 40.3
Lalb_Chr14g0370451 Lupinus albus HOM05D000179 ORTHO05D028851 7.6e-09 64.7 79 40.5
PGSC0003DMG400026959 Solanum tuberosum HOM05D000179 ORTHO05D000107 1.0e-08 64.3 76 44.7
Oeu045270.1 Olea europaea HOM05D005335 ORTHO05D006472 1.7e-08 63.5 52 59.6
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 2.2e-08 63.2 155 36.1
Duzib068G0009 Durio zibethinus HOM05D000179 ORTHO05D000107 2.9e-08 62.8 159 30.2
Nitab4.5_0000521g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 2.9e-08 62.8 162 32.1
Nitab4.5_0002202g0020 Nicotiana tabacum HOM05D000179 ORTHO05D000107 6.5e-08 61.6 162 32.1
Zm00001eb085520 Zea mays HOM05D005335 ORTHO05D006472 6.5e-08 61.6 120 35.0
ClCG01G006810 Citrullus lanatus HOM05D000179 ORTHO05D000107 1.4e-07 60.5 116 36.2
Thecc.02G302800 Theobroma cacao HOM05D000179 ORTHO05D000107 2.5e-07 59.7 169 32.0
Lsat_1_v5_gn_5_34921 Lactuca sativa HOM05D000179 ORTHO05D000107 3.2e-07 59.3 151 28.5
Glyma.05G248300 Glycine max HOM05D000179 ORTHO05D000107 5.5e-07 58.5 76 39.5
Gohir.A11G002000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 5.5e-07 58.5 86 41.9
QL03p039252 Quercus lobata HOM05D000179 ORTHO05D000107 5.5e-07 58.5 84 39.3
Glyma.08G056800 Glycine max HOM05D000179 ORTHO05D000107 7.1e-07 58.2 147 28.6
SGA_v2.0_scaffold72G24100 Striga asiatica HOM05D000179 ORTHO05D000107 9.3e-07 57.8 109 33.0
Gorai.006G190500 Gossypium raimondii HOM05D000179 ORTHO05D000107 1.2e-06 57.4 158 32.3
DCAR_002642 Daucus carota HOM05D000179 ORTHO05D000107 1.6e-06 57.0 166 30.1
CiPaw.05G159500 Carya illinoinensis HOM05D000179 ORTHO05D000107 2.1e-06 56.6 84 39.3
FAN17G2176 Fragaria x ananassa HOM05D000179 ORTHO05D000107 2.1e-06 56.6 172 29.1
CDE05G3493 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 4.6e-06 55.5 175 26.9
Glyma.07G107500 Glycine max HOM05D000179 ORTHO05D000107 4.6e-06 55.5 79 38.0
Os04g0386300 Oryza sativa ssp. japonica HOM05D005335 ORTHO05D006472 4.6e-06 55.5 93 37.6
MD06G1234600 Malus domestica HOM05D000179 ORTHO05D000107 6.0e-06 55.1 85 37.6
Sc10g0008970 Simmondsia chinensis HOM05D000179 ORTHO05D000107 7.9e-06 54.7 89 36.0


User provided reference genes

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