Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 0.0e+00 1849.7 926 100.0
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 0.0e+00 1680.2 904 93.8
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 0.0e+00 1624.0 946 88.9
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 0.0e+00 1614.7 944 89.0
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 0.0e+00 1484.5 968 81.3
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 0.0e+00 1346.6 1026 71.8
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 0.0e+00 1327.4 997 72.5
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 0.0e+00 1303.5 1013 70.2
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 0.0e+00 1294.3 1022 69.9
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 0.0e+00 1286.2 1009 69.6
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 0.0e+00 1278.8 951 73.2
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 0.0e+00 1140.6 978 64.4
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 9.8e-271 937.2 960 55.8
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 7.0e-269 931.0 600 83.5
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 1.0e-219 767.7 1096 43.6
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 6.2e-217 758.4 982 46.6
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 2.6e-215 753.1 979 46.9
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 2.2e-214 750.0 980 45.7
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.4e-213 747.3 1000 46.4
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 1.4e-213 747.3 1001 46.1
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 1.4e-213 747.3 1066 44.5
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 1.8e-211 740.3 1063 43.9
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 1.3e-209 734.2 1055 44.3
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 5.3e-208 728.8 1120 41.2
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 1.2e-207 727.6 873 47.8
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 7.9e-204 714.9 1147 40.4
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 3.0e-203 713.0 1060 44.2
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 3.7e-201 706.1 835 48.6
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 1.4e-200 704.1 555 63.1
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 3.1e-200 703.0 592 60.3
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 4.0e-200 702.6 1001 44.5
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 2.0e-199 700.3 853 47.0
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 1.7e-198 697.2 563 62.2
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 2.2e-198 696.8 556 62.2
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 2.2e-198 696.8 837 48.5
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 2.9e-198 696.4 1088 40.9
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.4e-197 694.1 557 62.1
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 2.5e-197 693.3 935 44.6
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 3.2e-197 693.0 553 62.2
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 7.1e-197 691.8 555 62.7
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 2.7e-196 689.9 833 48.3
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 6.0e-196 688.7 836 48.4
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 7.9e-196 688.3 584 59.9
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 3.0e-195 686.4 880 46.2
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 6.7e-195 685.3 997 44.0
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 1.1e-194 684.5 850 46.0
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 1.1e-194 684.5 568 61.1
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 1.5e-194 684.1 873 45.7
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 2.5e-194 683.3 850 46.1
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 2.5e-194 683.3 590 60.0
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 3.3e-194 682.9 1071 41.7
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 6.3e-193 678.7 1060 42.4
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 1.1e-192 677.9 591 58.7
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 1.1e-192 677.9 574 59.2
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 1.4e-192 677.6 602 57.1
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 1.8e-192 677.2 569 59.4
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 3.1e-192 676.4 589 58.9
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 1.2e-191 674.5 832 45.0
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.0e-191 673.7 605 58.0
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 3.4e-191 672.9 815 47.2
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 5.9e-191 672.2 964 42.3
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 7.7e-191 671.8 619 55.7
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 2.2e-190 670.2 834 47.4
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 3.8e-190 669.5 554 60.1
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 8.5e-190 668.3 635 54.6
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 2.5e-189 666.8 624 56.6
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 5.5e-189 665.6 1001 41.7
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 4.6e-188 662.5 991 41.2
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 1.3e-185 654.4 1031 40.9
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.2e-185 653.7 632 54.7
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 4.8e-185 652.5 558 59.1
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 1.8e-184 650.6 1075 39.3
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 3.1e-184 649.8 833 44.7
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 4.1e-184 649.4 553 59.3
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 9.1e-184 648.3 797 48.1
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 5.9e-183 645.6 603 55.6
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 2.9e-182 643.3 829 45.0
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 1.9e-181 640.6 808 45.3
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 5.5e-181 639.0 1057 40.3
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 5.5e-181 639.0 856 44.3
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 1.6e-180 637.5 930 44.2
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 5.7e-178 629.0 760 47.5
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 2.8e-177 626.7 575 56.7
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 2.8e-177 626.7 551 57.2
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 4.8e-177 625.9 596 55.5
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 3.1e-176 623.2 607 54.5
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 5.3e-176 622.5 561 56.5
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 2.5e-173 613.6 558 56.5
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 1.7e-169 600.9 568 55.1
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 6.3e-169 599.0 971 40.8
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 1.3e-166 591.3 991 40.3
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 1.6e-164 584.3 560 53.9
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 4.0e-163 579.7 460 61.7
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 6.8e-163 578.9 544 54.0
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.2e-162 578.2 840 43.3
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 5.0e-158 562.8 839 41.4
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 8.0e-156 555.4 501 56.1
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 2.6e-154 550.4 569 51.8
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 3.1e-152 543.5 758 42.6
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 1.3e-145 521.5 649 45.9
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 2.0e-130 471.1 829 39.7
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 4.3e-125 453.4 414 56.3
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 2.7e-119 434.1 743 35.5
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.0e-118 432.2 384 58.1
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 3.0e-118 430.6 605 44.3
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 9.6e-117 425.6 550 44.0
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 1.2e-114 418.7 313 66.1
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 4.6e-111 406.8 506 42.3
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 6.0e-111 406.4 757 37.4
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 5.6e-109 399.8 371 57.7
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 1.6e-108 398.3 533 43.7
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 8.4e-105 386.0 435 48.0
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 1.2e-103 382.1 516 42.8
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 4.2e-88 330.5 830 32.7
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 2.5e-77 294.7 668 35.2
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 1.8e-62 245.4 222 55.9
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 2.3e-62 245.0 230 56.5
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 3.5e-58 231.1 615 30.9
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 1.3e-28 132.9 272 32.4
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 6.4e-20 104.0 209 34.0
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 5.6e-16 90.9 80 56.2
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 4.7e-15 87.8 105 46.7
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 6.2e-15 87.4 58 62.1
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 8.1e-15 87.0 163 39.3
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 8.1e-15 87.0 49 75.5
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 1.1e-14 86.7 69 60.9
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 1.5e-13 82.8 57 66.7
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 1.5e-13 82.8 49 71.4
C03p37040 Brassica napus HOM05D000922 ORTHO05D007418 2.4e-11 75.5 66 59.1
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 1.0e-09 70.1 50 70.0
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 6.2e-07 60.8 34 70.6
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 5.2e-06 57.8 57 54.4
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 5.2e-06 57.8 45 66.7


User provided reference genes

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