Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 0.0e+00 1429.5 718 100.0
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 0.0e+00 1429.5 718 100.0
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 0.0e+00 1100.1 830 75.3
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 5.2e-304 1047.3 829 72.9
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 1.9e-285 985.7 788 72.8
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 7.1e-277 957.2 887 65.5
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 1.4e-216 756.9 916 53.2
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 4.2e-205 718.8 923 52.1
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 4.2e-205 718.8 923 52.1
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 4.1e-200 702.2 941 50.6
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 9.1e-200 701.0 958 49.7
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 8.0e-196 688.0 893 52.7
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 2.3e-195 686.4 949 50.1
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 8.3e-193 677.9 951 49.3
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 2.3e-190 669.8 965 48.2
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 5.9e-183 645.2 908 49.3
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 1.1e-181 641.0 908 49.1
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 1.0e-179 634.4 914 48.7
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 4.0e-163 579.3 838 49.4
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 5.2e-163 578.9 838 49.3
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 4.4e-154 549.3 826 48.5
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 1.1e-149 534.6 862 45.1
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 1.1e-149 534.6 860 44.9
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 2.0e-85 321.2 820 35.1
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 2.9e-73 280.8 604 37.9
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 7.9e-26 123.2 367 28.1
THA.LOC104803312 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 2.5e-24 118.2 188 42.0
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 1.3e-23 115.9 192 35.4
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 6.2e-23 113.6 444 25.5
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 5.3e-22 110.5 443 25.3
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 9.0e-22 109.8 241 30.3
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 1.5e-21 109.0 475 24.6
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 2.6e-21 108.2 458 24.7
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 8.4e-20 103.2 410 25.9
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 1.1e-19 102.8 588 25.3
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 4.2e-19 100.9 203 32.0
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 4.2e-19 100.9 429 28.0
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 7.1e-19 100.1 213 32.9
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 7.1e-19 100.1 323 30.3
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.2e-18 99.4 317 26.5
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 2.7e-18 98.2 352 29.0
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 2.7e-18 98.2 444 26.4
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.5e-18 97.8 501 25.0
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 6.0e-18 97.1 347 28.2
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.1e-16 92.8 349 26.4
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 1.5e-16 92.4 216 32.4
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.5e-16 92.4 216 31.9
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 1.5e-16 92.4 458 26.0
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 4.3e-16 90.9 195 31.8
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 4.3e-16 90.9 216 31.9
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 5.6e-16 90.5 193 31.6
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 9.6e-16 89.7 370 25.7
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 2.1e-15 88.6 206 29.6
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 3.7e-15 87.8 265 26.8
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 4.8e-15 87.4 221 28.1
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 4.8e-15 87.4 195 34.9
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 6.2e-15 87.0 421 25.9
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 8.2e-15 86.7 407 26.8
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 8.2e-15 86.7 476 23.7
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 1.8e-14 85.5 244 29.1
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 2.4e-14 85.1 189 31.2
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 3.1e-14 84.7 207 31.4
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 3.1e-14 84.7 462 24.5
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 4.0e-14 84.3 355 24.5
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 5.3e-14 84.0 187 29.9
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 5.3e-14 84.0 196 29.6
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 6.9e-14 83.6 209 31.6
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 9.0e-14 83.2 200 28.0
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 9.0e-14 83.2 471 24.8
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.0e-13 82.0 466 24.7
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 2.6e-13 81.6 270 28.9
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 3.4e-13 81.3 453 24.3
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 4.5e-13 80.9 195 33.3
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 4.5e-13 80.9 217 28.6
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 4.5e-13 80.9 217 28.6
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 1.0e-12 79.7 285 28.4
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 1.3e-12 79.3 210 28.6
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 1.3e-12 79.3 269 27.9
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 2.2e-12 78.6 199 31.7
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 2.2e-12 78.6 199 31.2
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 2.2e-12 78.6 141 35.5
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 3.8e-12 77.8 183 29.5
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 4.9e-12 77.4 441 24.9
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 4.9e-12 77.4 202 28.2
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 4.9e-12 77.4 284 27.5
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.5e-12 77.0 69 55.1
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 8.4e-12 76.6 264 29.2
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 1.4e-11 75.9 190 28.9
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 1.4e-11 75.9 183 29.0
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 1.9e-11 75.5 252 27.0
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 2.5e-11 75.1 60 56.7
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 2.5e-11 75.1 195 28.2
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 7.1e-11 73.6 252 27.4
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 9.3e-11 73.2 170 30.6
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 1.2e-10 72.8 292 26.7
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 1.6e-10 72.4 435 25.3
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 1.6e-10 72.4 361 24.7
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 1.6e-10 72.4 206 28.6
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 2.1e-10 72.0 187 29.9
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 2.1e-10 72.0 190 28.9
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.7e-10 71.6 197 29.4
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 2.7e-10 71.6 209 32.1
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 2.7e-10 71.6 169 32.5
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 2.7e-10 71.6 234 31.2
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 3.5e-10 71.2 533 23.3
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 3.5e-10 71.2 310 22.6
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 4.6e-10 70.9 288 27.1
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 1.0e-09 69.7 205 28.8
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 1.8e-09 68.9 164 29.3
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.8e-09 68.9 351 23.9
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.8e-09 68.9 444 21.6
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.8e-09 68.9 444 21.6
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 2.3e-09 68.6 192 26.6
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 3.0e-09 68.2 163 28.8
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 3.0e-09 68.2 195 28.2
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 6.7e-09 67.0 161 31.1
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 6.7e-09 67.0 327 22.3
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 8.7e-09 66.6 167 25.7
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 8.7e-09 66.6 474 23.8
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 1.1e-08 66.2 279 23.3
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 2.5e-08 65.1 343 23.9
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 2.5e-08 65.1 203 27.1
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 9.7e-08 63.2 210 27.1
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 1.6e-07 62.4 68 44.1
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 1.6e-07 62.4 72 45.8
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 2.2e-07 62.0 221 26.2
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 2.8e-07 61.6 139 29.5
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 8.2e-07 60.1 214 23.8
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 1.4e-06 59.3 229 24.5
Eucgr.L00346 Eucalyptus grandis HOM05D013249 ORTHO05D011012 1.8e-06 58.9 166 27.7
FvH4_5g10390 Fragaria vesca HOM05D013249 ORTHO05D011012 1.8e-06 58.9 169 28.4
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 2.4e-06 58.5 165 27.9
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 4.1e-06 57.8 174 29.3


User provided reference genes

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